Genetic characterization of porcine epidemic diarrhea virus in Korea from 1998 to 2013

Archives of Virology

Volumn 160, Issue 4, 2015, Pages 1055-1064

  Kim, Seong Hee ^a   Lee, Jung Min ^a   Jung, Jongsun ^b   Kim, In Joong ^a   Hyun, Bang Hun ^a   Kim, Hyun Il ^c   Park, Choi Kyu ^d   Oem, Jae Ku ^a   Kim, Yeon Hee ^a   Lee, Myoung Heon ^a   Lee, Kyoung Ki ^a  

^a Animal Plant and Fisheries Quarantine and Inspection Agency   (South Korea)

^b Syntekabio Inc   (South Korea)

^c Optifarm Solution   (South Korea)

^d Kyungpook National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

ANIMAL; CLASSIFICATION; CORONAVIRUS INFECTION; DIARRHEA; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PIG; PORCINE EPIDEMIC DIARRHEA VIRUS; SOUTH KOREA; SWINE DISEASE; VETERINARY; VIROLOGY;

ANIMALS; BASE SEQUENCE; CORONAVIRUS INFECTIONS; DIARRHEA; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; PORCINE EPIDEMIC DIARRHEA VIRUS; REPUBLIC OF KOREA; SWINE; SWINE DISEASES; VIRAL PROTEINS;

EID: 84925519368     PISSN: 03048608     EISSN: 14328798     Source Type: Journal    
DOI: 10.1007/s00705-015-2353-y     Document Type: Article

References (28)

1. Chang SH, Bae JL, Kang TJ, Kim J, Chung GH, Lim CW, Laude H, Yang MS, Jang YS (2002) Identification of the epitope region capable of inducing neutralizing antibodies against the porcine epidemic diarrhea virus. Mol Cells 14:295–299
2. Chen J, Liu X, Shi D, Shi H, Zhang X, Li C, Chi Y, Feng L (2013) Detection and molecular diversity of spike gene of porcine epidemic diarrhea virus in China. Viruses 5:2601–2613
3. Chen Q, Li G, Stasko J, Thomas JT, Stensland WR, Pillatzki AE, Gauger PC, Schwartz KJ, Madson D, Yoon KJ, Stevenson GW, Burrough ER, Harmon KM, Main RG, Zhang J (2014) Isolation and characterization of porcine epidemic diarrhea viruses associated with the 2013 disease outbreak among swine in the United States. J Clin Microbiol 52:234–243
4. Cruz DJ, Kim CJ, Shin HJ (2006) Phage-displayed peptides having antigenic similarities with porcine epidemic diarrhea virus (PEDV) neutralizing epitopes. Virology 354:28–34
5. Ding L, Huang Y, Du Q, Dong F, Zhao X, Zhang W, Xu X, Tong D (2014) TGEV nucleocapsid protein induces cell cycle arrest and apoptosis through activation of p53 signaling. Biochem Biophys Res Commun 445:497–503
6. Duarte M, Laude H (1994) Sequence of the spike protein of the porcine epidemic diarrhoea virus. J Gen Virol 75:1195–1200
7. Gao Y, Kou Q, Ge X, Zhou L, Guo X, Yang H (2012) Phylogenetic analysis of porcine epidemic diarrhea virus field strains prevailing recently in China. Arch Virol 158:711–715
8. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 14:95–98
9. Huang YW, Dickerman AW, Piñeyro P, Li L, Fang L, Kiehne R, Opriessnig T, Meng XJ (2013) Origin, evolution, and genotyping of emergent porcine epidemic diarrhea virus strains in the United States. MBio 4(5):e00737-13
10. Kim SH, Kim IJ, Pyo HM, Tark DS, Song JY, Hyun BH (2007) Multiplex real-time RT-PCR for the simultaneous detection and quantification of transmissible gastroenteritis virus and porcine epidemic diarrhea virus. J Virol Methods 146:172–177
11. Kocherhans R, Bridgen A, Ackermann M, Tobler K (2001) Completion of the porcine epidemic diarrhoea coronavirus (PEDV) genome sequence. Virus Genes 23:137–144
12. Kweon CH, Kwon BJ, Jung TS, Kee YJ, Hur DH, Hwang EK, Rhee JC, An SH (1993) Isolation of porcine epidemic diarrhea virus (PEDV) in Korea. Kor J Vet Res 33:249–254
13. Lai MMC, Holmes KV (2001) Coronaviridae: the viruses and their replication. In: Knipe DM, Howley PM (eds) Fields’ virology, 4th edn. Lippincott Williams & Wilkins, Philadelphia, pp 1163–1189
14. Laude H, Gelfi J, Lavenant L, Charley B (1992) Single amino acid changes in the viral glycoprotein M affect induction of alpha interferon by the coronavirus transmissible gastroenteritis virus. J Virol 66:743–749
15. Lee DK, Park CK, Kim SH, Lee C (2010) Heterogeneity in spike protein genes of porcine epidemic diarrhea viruses isolated in Korea. Virus Res 149:175–182
16. Ortego J, Ceriani JE, Patino C, Plana J, Enjuanes L (2007) Absence of E protein arrests transmissible gastroenteritis coronavirus maturation in the secretory pathway. Virology 368:296–308
17. Park SJ, Moon HJ, Yang JS, Lee CS, Song DS, Kang BK, Park BK (2007) Sequence analysis of the partial spike glycoprotein gene of porcine epidemic diarrhea viruses isolated in Korea. Virus Genes 35:321–332
18. Reed LJ, Muench H (1938) A simple method of estimating fifty percent endpoints. Am J Hyg (Lond) 27:493–497
19. Saif LJ, Pensaert MB, Sestak K, Yeo S-G, Jung K (2012) Coronaviruses. In: Straw BE, Zimmerman JJ, Karriker LA, Ramirez A, Schwartz KJ, Stevenson GW (eds) Disease of swine, 10th edn. Wiley-Blackwell, Ames, pp 501–524
20. Spaan W, Cavanagh D, Horzinek MC (1988) Coronaviruses: structure and genome expression. J Gen Virol 69(Pt 12):2939–2952
21. Sun D, Feng L, Shi H, Chen J, Cui X, Chen H, Liu S, Tong Y, Wang Y, Tong G (2008) Identification of two novel B cell epitopes on porcine epidemic diarrhea virus spike protein. Vet Microbiol 131:73–81
22. Suzuki Y, Gojobori T, Nei M (2001) ADAPTSITE: detecting natural selection at single amino acid sites. Bioinformatics 17:660–661
23. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony method. Mol Biol Evol 28:2731–2739
24. Temeeyasen G, Srijangwad A, Tripipat T, Tipsombatboon P, Piriyapongsa J, Phoolcharoen W, Chuanasa T, Tantituvanont A, Nilubol D (2014) Genetic diversity of ORF3 and spike genes of porcine epidemic diarrhea virus in Thailand. Infect Genet Evol 21:205–213
25. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucl Acids Res 22:4673–4680
26. Wang XM, Niu BB, Yan H, Gao DS, Yang X, Chen L, Chang HT, Zhao J, Wang CQ (2013) Genetic properties of endemic Chinese porcine epidemic diarrhea virus strains isolated since 2010. Arch Virol 158:2487–2494
27. Zhang Z, Chen J, Shi H, Chen X, Shi D, Feng L, Yang B (2012) Identification of a conserved linear B-cell epitope in the M protein of porcine epidemic diarrhea virus. Virol J 9:225
28. Xu X, Zhang H, Zhang Q, Dong J, Liang Y, Huang Y, Liu HJ, Tong D (2013) Porcine epidemic diarrhea virus E protein causes endoplasmic reticulum stress and up-regulates interleukin-8 expression. Virol J 10:26