Detection and molecular diversity of spike gene of porcine epidemic diarrhea virus in China

Viruses

Volumn 5, Issue 10, 2013, Pages 2601-2613

  Chen, Jianfei ^a   Liu, Xiaozhen ^a   Shi, Da ^a   Shi, Hongyan ^a   Zhang, Xin ^a   Li, Changlong ^a   Chi, Yanbin ^a   Feng, Li ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Genetic variation; Heterogeneity; PEDV; S gene; Variants

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CHINA; GENETIC HETEROGENEITY; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PORCINE EPIDEMIC DIARRHEA VIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SPIKE GENE; SWINE; VIRUS DETECTION; VIRUS GENE; VIRUS STRAIN;

AMINO ACID SEQUENCE; ANIMALS; CHINA; CLUSTER ANALYSIS; CORONAVIRUS INFECTIONS; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; MUTATION; PHYLOGENY; PORCINE EPIDEMIC DIARRHEA VIRUS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SPIKE GLYCOPROTEIN, CORONAVIRUS; SWINE; SWINE DISEASES;

EID: 84885969768     PISSN: 19994915     EISSN: None     Source Type: Journal    
DOI: 10.3390/v5102601     Document Type: Article

References (25)

1. Pensaert, M.B.; DeBouck, P. A new coronavirus-like particles associated with diarrhea in swine. Arch. Virol. 1978, 58, 243-247.
2. Oldham, J. Letter to the editor. Pig Farming 1972, 10, 72-73.
3. Pensaert, M.B.; Callebaut, P.; DeBouck, P. Porcine epidemic diarrhea (PED) caused by a coronavirus: Present knowledge. Proc. Congr. Int. Pig. Vet. Soc. 1982, 7, 52.
4. Xuan, H.; Xing, D.; Wang, D.; Zhu, W.; Zhao, F.; Gong, H. Study on the culture of porcine epidemic diarrhea virus adapted to fetal porcine intestine primary cell monolayer. Chin. J. Vet. Sci.1984, 4, 202-208.
5. Sun, R.Q.; Cai, R.J.; Chen, Y.Q.; Liang, P.S.; Chen, D.K.; Song, C.X. Outbreak of porcine epidemic diarrhea in suckling piglets, China. Emerg. Infect. Dis. 2011, 18, 161-163.
6. Li, W.; Li, H.; Liu, Y.; Pan, Y.; Deng, F.; Song, Y.; Tang, X.; He, Q. New variants of porcine epidemic diarrhea virus, China, 2011. Emerg. Infect. Dis. 2012, 18, 1350-1353.
7. Sánchez, C.M.; Gebauer, F.; Suñé, C.; Mendez, A.; Dopazo, J.; Enjuanes, L. Genetic evolution and tropism of transmissible gastroenteritis coronaviruses. Virology 1992, 190, 92-105.
8. Paton, D.; Lowings, P. Discrimination between transmissible gastroenteritis virus isolates. Arch. Virol. 1997, 142, 1703-1711.
9. Kim, S.J.; Han, J.H.; Kwon, H.M. Partial sequence of the spike glycoprotein gene of transmissible gastroenteritis viruses isolated in Korea. Vet. Microbiol. 2003, 94, 195-206.
10. Park, S.J.; Moon, H.J.; Yang, J.S.; Lee, C.S.; Song, D.S.; Kang, B.K.; Park, B.K. Cloning and further sequence analysis of the spike gene of attenuated porcine epidemic diarrhea virus DR13. Virus Genes 2007, 35, 55-64.
11. Puranaveja, S.; Poolperm, P.; Lertwatcharasarakul, P.; Kesdaengsakonwut, S.; Boonsoongnern, A.; Urairong, K.; Kitikoon, P.; Choojai, P.; Kedkovid, R.; Teankum, K.; et al. Chinese-like strain of porcine epidemic diarrhea virus, Thailand. Emerg. Infect. Dis. 2009, 15, 1112-1115.
12. Lee, D.K.; Park, C.K.; Kim, S.H.; Lee, C. Heterogeneity in spike protein genes of porcine epidemic diarrhea viruses isolated in Korea. Virus Res. 2010, 149, 175-182.
13. Cruz, D.J.; Kim, C.J.; Shin, H.J. Phage-displayed peptides having antigenic similarities with porcine epidemic diarrhea virus (PEDV) neutralizing epitopes. Virology 2006, 354, 28-34.
14. Chang, S.H.; Bae, J.L.; Kang, T.J.; Kim, J.; Chung, G.H.; Lim, C.W.; Laude, H.; Yang, M.S.; Jang, Y.S. Identification of the epitope region capable of inducing neutralizing antibodies against the porcine epidemic diarrhea virus. Mol. Cells 2002, 14, 295-299.
15. Sun, D.; Feng, L.; Shi, H.; Chen, J.; Cui, X.; Chen, H.; Liu, S.; Tong, Y.; Wang, Y.; Tong, G. Identification of two novel B cell epitopes on porcine epidemic diarrhea virus spike protein. Vet. Microbiol. 2008, 131, 73-81.
16. Wang, C.; Chen, J.; Shi, H.; Qiu, H.J.; Xue, F.; Liu, S.; Liu, C.; Zhu, Y.; Almazán, F.; Enjuanes, L. et al. Rapid differentiation of vaccine strain and Chinese field strains of transmissible gastroenteritis virus by restriction fragment length polymorphism of the N gene. Virus Genes 2010, 41, 47-58.
17. Chen, J.; Liu, X.; Shi, D.; Shi, H.; Zhang, X.; Feng, L. Complete genome sequence of a porcine epidemic diarrhea virus variant. J. Virol. 2012, 86, doi: 10.1128/JVI.07150-11.
18. Park, S.J.; Song, D.S.; Ha, G.W.; Park, B.K. Sequence analysis of the partial spike glycoprotein gene of porcine epidemic diarrhea viruses isolated in Korea. Virus Genes, 2007, 35, 321-332.
19. Sato, T.; Takeyama, N.; Katsumata, A.; Tuchiya, K.; Kodama, T.; Kusanagi, K. Mutations in the spike gene of porcine epidemic diarrhea virus associated with growth adaptation in vitro and attenuation of virulence in vivo. Virus Genes 2011, 43, 72-78.
20. Kocherhans, R.; Bridgen, A.; Ackermann, M.; Tobler, K. Completion of the porcine epidemic diarrhoea coronavirus (PEDV) genome sequence. Virus Genes 2001, 23, 137-144.
21. Duarte, M.; Laude, H. Sequence of the spike protein of porcine epidemic diarrhea virus. J. Gen. Virol. 1994, 75, 1195-1200.
22. Chen, J.; Wang, C.; Shi, H.; Qiu, H.J.; Liu, S.; Shi, D.; Zhang, X.; Feng, L. Complete genome sequence of a Chinese virulent porcine epidemic diarrhea virus strain. J. Virol. 2011, 85, 11538-11539.
23. Chen, J.; Wang, C.; Shi, H.; Qiu, H.J.; Liu, S.; Chen, X.; Zhang, Z.; Feng, L. Molecular epidemiology of porcine epidemic diarrhea virus in China. Arch. Virol. 2010, 155, 1471-1476.
24. DNAStar package; version 7.1.0. Lasergene; DNAStar, Inc.: Madison, WI, USA, 2006.
25. Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Med. Biol. Evol. 2011, 28, 2731-2739.