Analysis of RNAseq datasets from a comparative infectious disease zebrafish model using GeneTiles bioinformatics

Immunogenetics

Volumn 67, Issue 3, 2015, Pages 135-147

  Veneman, Wouter J ^a   de Sonneville, Jan ^b   van der Kolk, Kees Jan ^b,c   Ordas, Anita ^a   Al Ars, Zaid ^c   Meijer, Annemarie H ^a   Spaink, Herman P ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

^b Life Science Methods BV   (Netherlands)

^c DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

Author keywords

Differential splicing; Host pathogen interaction; Mycobacterium marinum; RNA deep sequencing; Staphylococcus epidermidis; Zebrafish

Indexed keywords

GLUCAGON; TRANSCRIPTOME; FISH PROTEIN;

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BACTERIAL INFECTION; BIOINFORMATICS; COMPUTER PROGRAM; CONTROLLED STUDY; EMBRYO; HIGH THROUGHPUT SCREENING; LARVA; MYCOBACTERIUM MARINUM; NONHUMAN; PRIORITY JOURNAL; RNA SEQUENCE; RNA SPLICING; SEQUENCE ANALYSIS; STAPHYLOCOCCUS EPIDERMIDIS; ZEBRA FISH; ALTERNATIVE RNA SPLICING; ANIMAL; ATYPICAL MYCOBACTERIOSIS; COMPARATIVE STUDY; DISEASE MODEL; FISH DISEASE; GENE EXPRESSION PROFILING; GENETICS; GROWTH, DEVELOPMENT AND AGING; HIGH THROUGHPUT SEQUENCING; HOST PATHOGEN INTERACTION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; SOFTWARE; STAPHYLOCOCCUS INFECTION; VETERINARY;

ALTERNATIVE SPLICING; ANIMALS; DISEASE MODELS, ANIMAL; FISH DISEASES; FISH PROTEINS; GENE EXPRESSION PROFILING; GLUCAGON; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HOST-PATHOGEN INTERACTIONS; LARVA; METABOLIC NETWORKS AND PATHWAYS; MOLECULAR SEQUENCE ANNOTATION; MYCOBACTERIUM INFECTIONS, NONTUBERCULOUS; MYCOBACTERIUM MARINUM; SOFTWARE; STAPHYLOCOCCAL INFECTIONS; STAPHYLOCOCCUS EPIDERMIDIS; TRANSCRIPTOME; ZEBRAFISH;

EID: 84925482979     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-014-0820-3     Document Type: Article

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