Identifying host pathogenic pathways in bovine digital dermatitis by RNA-Seq analysis

Veterinary Journal

Volumn 197, Issue 3, 2013, Pages 699-706

  Scholey, R A ^a   Evans, N J ^a   Blowey, R W ^b   Massey, J P ^c   Murray, R D ^a   Smith, R F ^a   Ollier, W E ^c   Carter, S D ^a  

^a UNIVERSITY OF LIVERPOOL   (United Kingdom)

^b WOOD VETERINARY GROUP   (United Kingdom)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

2 Macroglobulin like 1; Bovine digital dermatitis; Keratin; Pathway analysis; RNA Seq

Indexed keywords

CYTOKERATIN 6; INTERLEUKIN 1BETA; MESSENGER RNA;

ALPHA2ML1 GENE; ANIMAL TISSUE; ARTICLE; BACTERIAL SURVIVAL; CONTROLLED STUDY; DIGITAL DERMATITIS; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE MAPPING; GENE REGULATORY NETWORK; GENETIC ASSOCIATION; HOST PATHOGEN INTERACTION; IL1BETA GENE; IMMUNE EVASION; INTERMETHOD COMPARISON; KERATIN 6A GENE; NONHUMAN; RNA SEQUENCE; SKIN BIOPSY; TRANSCRIPTION REGULATION;

BACTERIA (MICROORGANISMS); BOS; BOVINAE;

BOVINE DIGITAL DERMATITIS; KERATIN; PATHWAY ANALYSIS; RNA-SEQ; Α2-MACROGLOBULIN-LIKE 1;

ANIMALS; CATTLE; CATTLE DISEASES; DERMATITIS; FOOT DISEASES; GENE EXPRESSION REGULATION; GENETIC PREDISPOSITION TO DISEASE; NUCLEIC ACID AMPLIFICATION TECHNIQUES; RNA;

EID: 84884982492     PISSN: 10900233     EISSN: 15322971     Source Type: Journal    
DOI: 10.1016/j.tvjl.2013.03.008     Document Type: Article

References (49)

1. Alderete J.F., Baseman J.B. Surface-associated host proteins on virulent Treponema pallidum. Infection and Immunity 1979, 26:1048-1056.
2. Argaez-Rodriguez F.J., Hird D.W., Hernandez de Anda J., Read D.H., Rodriguez-Lainz A. Papillomatous digital dermatitis on a commercial dairy farm in Mexicali, Mexico: Incidence and effect on reproduction and milk production. Preventive Veterinary Medicine 1997, 32:275-286.
3. Blowey R.W., Sharp M.W. Digital dermatitis in dairy cattle. Veterinary Record 1988, 122:505-508.
4. Blowey R.W., Done S.H., Cooley W. Observations on the pathogenesis of digital dermatitis in cattle. Veterinary Record 1994, 135:115-117.
5. 2-Macroglobulin, a multifunctional binding protein with targeting characteristics. FASEB Journal 1992, 6:3345-3353.
6. -/- retinal transcriptomes. Molecular Vision 2011, 17:3034-3054.
7. Cha E., Hertl J.A., Bar D., Grohn Y.T. The cost of different types of lameness in dairy cows calculated by dynamic programming. Preventive Veterinary Medicine 2010, 97:1-8.
8. Cheli, R., Mortellaro, C.M., 1974. La dermatite digitale del bovine. In: Proceedings of the 8th International Meeting on Diseases of Cattle, Milan, Italy, pp. 208-213.
9. Dasu M.R., Spies M., Barrow R.E., Herndon D.N. Matrix metalloproteinases and their tissue inhibitors in severely burned children. Wound Repair and Regeneration 2003, 11:177-180.
10. Demirkan I., Walker R.L., Murray R.D., Blowey R.W., Carter S.D. Serological evidence of spirochaetal infections associated with digital dermatitis in dairy cattle. The Veterinary Journal 1999, 157:69-77.
11. Dhawi A., Hart C.A., Demirkan I., Davies I.H., Carter S.D. Bovine digital dermatitis and severe virulent ovine foot rot: A common spirochaetal pathogenesis. The Veterinary Journal 2005, 169:232-241.
12. Döpfer D., Koopmans A., Meijer F.A., Szakáll I., Schukken Y.H., Klee W., Bosma R.B., Cornelisse J.L., van Asten A.J.A.M., ter Huurne A.A.H.M. Histological and bacteriological evaluation of digital dermatitis in cattle, with special reference to spirochaetes and Campylobacter faecalis. Veterinary Record 1997, 140:620-623.
13. Duchossoy Y., Horvat J.C., Stettler O. MMP-related gelatinase activity is strongly induced in scar tissue of injured adult spinal cord and forms pathways for ingrowing neurites. Molecular and Cellular Neurosciences 2001, 17:945-956.
14. Edgar R., Domrachev M., Lash A.E. Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Research 2002, 30:207-210.
15. Evans N.J., Brown J.M., Demirkan I., Murray R.D., Vink W.D., Blowey R.W., Hart C.A., Carter S.D. Three unique groups of spirochetes isolated from digital dermatitis lesions in UK cattle. Veterinary Microbiology 2008, 130:141-150.
16. Evans N.J., Brown J.M., Demirkan I., Singh P., Getty B., Timofte D., Vink W.D., Murray R.D., Blowey R.W., Birtles R.J., Hart C.A., Carter S.D. Association of unique, isolated treponemes with bovine digital dermatitis lesions. Journal of Clinical Microbiology 2009, 47:689-696.
17. Freedberg I.M., Tomic-Canic M., Komine M., Blumenberg M. Keratins and the keratinocyte activation cycle. Journal of Investigative Dermatology 2001, 116:633-640.
18. 2-macroglobulin family expressed in the human epidermis. Journal of Biological Chemistry 2006, 281:5780-5789.
19. Gomez A., Cook N.B., Bernardoni N.D., Rieman J., Dusick A.F., Hartshorn R., Socha M.T., Read D.H., Döpfer D. An experimental infection model to induce digital dermatitis infection in cattle. Journal of Dairy Science 2012, 95:1821-1830.
20. Hernandez J., Shearer J.K., Webb D.W. Effect of lameness on the calving-to-conception interval in dairy cows. Journal of the American Veterinary Medical Association 2001, 218:1611-1614.
21. Holley S.L., Fryer A.A., Haycock J.W., Grubb S.E., Strange R.C., Hoban P.R. Differential effects of glutathione S-transferase π (GSTP1) haplotypes on cell proliferation and apoptosis. Carcinogenesis 2007, 28:2268-2273.
22. Korkmaz B., Horwitz M.S., Jenne D.E., Gauthier F. Neutrophil elastase, proteinase 3, and cathepsin G as therapeutic targets in human diseases. Pharmacological Reviews 2010, 62:726-759.
23. Koskinen A., Vuolteenaho K., Nieminen R., Moilanen T., Moilanen E. Leptin enhances MMP-1, MMP-3 and MMP-13 production in human osteoarthritic cartilage and correlates with MMP-1 and MMP-3 in synovial fluid from OA patients. Clinical and Experimental Rheumatology 2011, 29:57-64.
24. Kou X., Chen N., Feng Z., Luo L., Yin Z. GSTP1 negatively regulates Stat3 activation in epidermal growth factor signalling. Oncology Letters 2013, 5:1053-1057.
25. Kushlinskii N.E., Solovykh E.A., Karaoglanova T.B., Boyar U., Gershtein E.S., Troshin A.A., Maksimovskaya L.N., Yanushevich O.O. Matrix metalloproteinases and inflammatory cytokines in oral fluid of patients with chronic generalized periodontitis and various construction materials. Bulletin of Experimental Biology and Medicine 2012, 153:72-76.
26. Laven R.A., Logue D.N. Treatment strategies for digital dermatitis for the UK. The Veterinary Journal 2006, 171:79-88.
27. Masson V., de la Ballina L.R., Munaut C., Wielockx B., Joust M., Maillard C., Blacher S., Bajou K., Itoh T., Itohara S., et al. Contribution of host MMP-2 and MMP-9 to promote tumor vascularization and invasion of malignant keratinocytes. FASEB Journal 2005, 19:234-236.
28. Matkovich S.J., Zhang Y., Van Booven D.J., Dorn G.W. Deep mRNA sequencing for in vivo functional analysis of cardiac transcriptional regulators. Circulation Research 2010, 106:1459-1467.
29. Matzner Y., Abedat S., Shapiro E., Eisenberg S., Bar-Gil-Shitrit A., Stepensky P., Calco S., Azar Y., Urieli-Shoval S. Expression of the familial Mediterranean fever gene and activity of the C5a inhibitor in human primary fibroblast cultures. Blood 2000, 96:727-731.
30. Mortazavi A., Williams B.A., McCue K., Schaeffer L., Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods 2008, 5:621-628.
31. Murray R.D., Downham D.Y., Demirkan I., Carter S.D. Some relationships between spirochaete infections and digital dermatitis in four UK dairy herds. Research in Veterinary Science 2002, 73:223-230.
32. Nagalakshmi U., Wang Z., Waern K., Shou C., Raha D., Gerstein M., Snyder M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 2008, 320:1344-1349.
33. Nordhoff M., Moter A., Schrank K., Wieler L.H. High prevalence of treponemes in bovine digital dermatitis - A molecular epidemiology. Veterinary Microbiology 2008, 131:293-300.
34. Rasmussen M., Capion N., Klitgaard K., Rogdo T., Fjeldaas T., Boye M., Jensen T.K. Bovine digital dermatitis: Possible pathogenic consortium consisting of Dichelobacter nodosus and multiple Treponema species. Veterinary Microbiology 2012, 160:151-161.
35. Robinson M.D., McCarthy D.J., Smyth G.K. EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26:139-140.
36. Sauvageau R., Higgins R., Jacques M., Bouchard E. Bovine digital dermatitis. Canadian Veterinary Journal 1994, 35:522-523.
37. Schlafer S., Nordhoff M., Wyss C., Strub S., Hübner J., Gescher D.M., Petrich A., Göbel U.B., Moter A. Involvement of Guggenheimella bovis in digital dermatitis lesions of dairy cows. Veterinary Microbiology 2008, 128:118-125.
38. Seshadri S., Duncan M.D., Hart J.M., Gavrilin M.A., Wewers M.D. Pyrin levels in human monocytes and monocyte-derived macrophages regulate IL-1β processing and release. Journal of Immunology 2007, 179:1274-1281.
39. Smith C.E., Johnson D.A. Human bronchial leucocyte proteinase inhibitor. Rapid isolation and kinetic analysis with human leucocyte proteinases. Biochemistry Journal 1985, 225:463-472.
40. Socransky S.S., Hubersak C. Replacement of ascitic fluid or rabbit serum requirement of Treponema dentium by α-globulin. Journal of Bacteriology 1967, 94:1795-1796.
41. Suzuki M., Loesche W.J. Ceruloplasmin can substitute for rabbit serum in stimulating the growth of Treponema denticola. Infection and Immunity 1989, 57:643-644.
42. Vermunt J.J., Hill F.I. Papillomatous digital dermatitis in a Holstein-Friesian bull. New Zealand Veterinary Journal 2004, 52:99-101.
43. Vink W.D., Jones G., Johnson W.O., Brown J., Demirkan I., Carter S.D., French N.P. Diagnostic assessment without cut-offs: Application of serology for the modelling of bovine digital dermatitis infection. Preventive Veterinary Medicine 2009, 92:235-248.
44. Walker R.L., Read D.H., Loretz K.J., Hird D.W., Berry S.L. Humoral response of dairy cattle to spirochetes isolated from papillomatous digital dermatitis lesions. American Journal of Veterinary research 1997, 58:744-748.
45. Wall S.J., Bevan D., Thomas D.W., Harding K.G., Edwards D.R., Murphy G. Differential expression of matrix metalloproteinases during impaired wound healing of the diabetes mouse. Journal of Investigative Dermatology 2002, 119:91-98.
46. Wang Z., Gerstein M., Snyder M. RNA-Seq: A revolutionary tool for transcriptomics. Nature Reviews Genetics 2009, 10:57-63.
47. Wu Z., Hansmann B., Meyer-Hoffert U., Glaser R., Schroder J.M. Molecular identification and expression analysis of filaggrin-2, a member of the S100 fused-type protein family. PLoS ONE 2009, 4:e5227.
48. Xue B., Wu Y., Yin Z., Zhang H., Sun S., Yi T., Luo L. Regulation of lipopolysaccharide-induced inflammatory response by glutathione S-transferase P1 in RAW264.7 cells. FEBS Letters 2005, 579:4081-4087.
49. Zuerner R.L., Heidari M., Elliott M.K., Alt D.P., Neill J.D. Papillomatous digital dermatitis spirochetes suppress the bovine macrophage innate immune response. Veterinary Microbiology 2007, 125:256-264.