Analysis and Elucidation of Phosphoenolpyruvate Carboxylase in Cyanobacteria

Protein Journal

Volumn 34, Issue 1, 2015, Pages 73-81

  Shylajanaciyar, Mohandass ^a   Dineshbabu, Gnanasekaran ^a   Rajalakshmi, Ramamoorthy ^a   Subramanian, Gopalakrishnan ^a   Prabaharan, Dharmar ^a   Uma, Lakshmanan ^a  

^a BHARATHIDASAN UNIVERSITY   (India)

Author keywords

C3 and C4 enzymes; Cyanobacteria; Phosphoenolpyruvate; Phosphoenolpyruvate carboxylase; Photorespiration

Indexed keywords

ASPARTIC ACID; ISOENZYME; PHOSPHOENOLPYRUVATE; PHOSPHOENOLPYRUVATE CARBOXYLASE; BACTERIAL PROTEIN; PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP);

ALLOSTERISM; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; COMPUTER MODEL; CONVERGENT EVOLUTION; CYANOBACTERIUM; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME PHOSPHORYLATION; ENZYME SUBSTRATE COMPLEX; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; SEQUENCE ALIGNMENT; ANABAENA VARIABILIS; CHEMISTRY; ENZYMOLOGY; GENETICS; KINETICS; METABOLISM; PROCHLOROCOCCUS;

ANABAENA VARIABILIS; BACTERIAL PROTEINS; KINETICS; PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP); PROCHLOROCOCCUS;

EID: 84925463538     PISSN: 15723887     EISSN: 18758355     Source Type: Journal    
DOI: 10.1007/s10930-015-9598-x     Document Type: Article

References (45)

1. Gupta RS, Pereira M, Chandrasekar C (2003) Molecular signature in protein sequences that are characteristic of cyanobacteria and plastid homologues. Int J Syst Evol Microbiol 53:1833–1842
2. 4 from maize and quaternary complex of E. coli phosphoenolpyruvate carboxylase. Structure 10:1721–1730
3. Matsumura H, Izui K, Mizuguchi K (2006) A novel mechanism of allosteric regulation of archeal phosphoenolpyruvate carboxylase: a combined approach to structural based alignment and model assessment. Protein Eng Des Sel 19:409–419
4. O’Leary MH (1982) Phosphoenolpyruvate carboxylase: an enzymologist’s view. Annu Rev Plant Phys 33:297–315
5. Gonzalez MC, Echevarra C, Vidal J, Cejudo FJ (2002) Isolation and characterization of wheat phosphoenolpyruvate carboxylase gene. Modeling of the encoded protein. Plant Sci 162:233–238
6. Lepiniec L, Thomas M, Vidal J (2003) From enzyme activity to plant biotechnology: 30 years of research of phosphoenolpyruvate carboxylase. Plant Physiol 41:533–539
7. 4 Plant Biol 12:411–444
8. Coleman JR, Colman B (1981) Photosynthetic carbon assimilation in the blue green algae Coccochloris peniocystis. Plant, Cell Environ 4:285–290
9. Owttrim GW, Colman B (1988) Phosphoenolpyruvate carboxylase mediated carbon flow in a cyanobacterium. Biochem Cell Biol 66:93–99
10. Stanier RY, Cohen-Bazire G (1977) Phototrophic prokaryotic: the Cyanobacteria. Annu Rev Microbiol 31:225–274
11. Luinenburg I, Coleman JR (1990) A requirement for phosphoenolpyruvate carboxylase in the cyanobacterium Synechococcus PCC 7942. Arch Microbiol 154:471–474
12. Weathers PJ, Allen MM (1978) Variations in short-term products of inorganic carbon fixation in exponential and stationary phase cultures of Aphanocapsa 6308. Arch Microbiol 116:231–234
13. Izui K, Matsumura H, Furumoto T, Kai Y (2004) Phosphoenolpyruvate carboxylase: a new era of structural biology. Annu Rev Plant Biol 55:69–84
14. Komarek J (2006) Cyanobacterial taxonomy: current problems and prospects for the integration of traditional and molecular approaches. Algae 21:349–375
15. Altschul SF, Madden TL, Schaeffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search program. Nucleic Acids Res 25:3389–3402
16. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:59–98
17. Fiser A, Sali A (2003) Modeller: generation and refinement of homology—based protein sequence models. Method Enzymol 374:461–491
18. Eisenberg D, Luthy R, Bowie JU (1997) VERIFY3D: assessment of protein models with three dimensional profiles. Method Enzymol 277:396–404
19. Hooft RW, Vriend G, Sander C, Abola EE (1999) Errors in protein structures. Nature 381:272
20. Morris GM, Goodsell DS, Haliday RS, Huey R, Hart WE, Belew RK, Olson AJ (1998) Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J Comput Chem 19:1639–1662
21. Sanner MF (1999) Python: a programming language for software integration and development. J Mol Graph Mode 17:57–61
22. Thomsen R, Christensen MH (2006) MolDock: a new technique for high- accuracy molecular docking. J Med Chem 49:3315–3321
23. Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (2004) UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem 25:1605–1612
24. Rippka R, Deruelles J, Waterbury JB, Herdman M, Stainer RY (1979) Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J Gen Microbiol 111:1–61
25. Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein Measurement with the Folin phenol reagent. J Biol Chem 193:265–275
26. Owttrim GW, Colman B (1986) Purification and characterization of phosphoenolpyruvate carboxylase from a cyanobacterium. J Bacteriol 168:207–212
27. 4Alternantheras. Planta 223:359–368
28. Chollet R, Vidal J, O’Leary MH (1992) Phosphoenolpyruvate carboxylase: a ubiquitous, highly regulated enzyme in plants. Annu Rev Plant Phys 47:273–315
29. 4 photosynthesis genes. Plant Physiol 111:946–957
30. 4 intermediate species of Flaveria. Plant Physiol 82:695–699
31. 3): molecular characterization and expression analysis of the ppcB and ppcC genes. Plant Mol Biol 34:427–443
32. Koprivova A, Melzer M, Vonballmoos P, Mandel T, Brunold C, Kopriva S (2001) Assimilatory sulfate reduction in C-3, C-3-C-4, and C-4 species of Flaveria. Plant Physiol 127:543–550
33. Kai Y, Matsumura H, Inoue T, Terada K, Nagara Y, Yoshinaga T, Kihara A, Tsumura K, Izui K (1999) Three dimensional structure of phosphoenolpyruvate carboxylase: a proposed mechanism for the allosteric inhibition. Proc Natl Acad Sci 96:823–828
34. 2+-bound phosphoenolpyruvate carboxylase from Escherichia coli. FEBS Lett 458:93–96
35. 4Flaveria species. Mol Gen Genet 234:275–284
36. 4 and CAM metabolism. J Exp Bot 65:3609–3621
37. 4 phosphoenolpyruvate carboxylase in Flaveria: determinants for high tolerance towards the inhibitor l-malate. Plant Cell Environ 31:793–803
38. 4 characteristic. J Biol Chem 275:27917–27923
39. 4 phosphoenolpyruvate carboxylase. Arch Biochem Biophys 414:180–188
40. Smith AA, Coomes MW, Smith TE (2008) Isolation and sequence of the phosphoenolpyruvate carboxylase gene of the marine cyanobacterium Synechococcus PCC 7002. J Biol Sci 8:1261–1270
41. Chollet R (1996) Phosphoenolpyruvate carboxylase: a ubiquitous, highly regulated enzyme in plants. Annu Rev Plant Phys 47:273–298
42. Baur BI, Dietz KJ, Winter K (1992) Regulatory protein phosphorylation of phosphoenolpyruvate carboxylase in the facultative crassulacean-acid-metabolism plant Mesembryanthemum crystallinurn L. Eur J Biochem 209:95–101
43. 4 PEP carboxylase. Trends Plant Sci 2:230–237
44. Kai Y, Matsumura H, Izui K (2003) Phosphoenolpyruvate carboxylase: three dimensional structure and molecular mechanisms. Arch Biochem Biophys 414:170–179
45. Yano M, Terada K, Umiji K, Katsuki H (1995) Catalytic role of an arginine residue in the highly conserved and unique sequence of phosphoenolpyruvate carboxylase. J Biochem 117:1196–1200 Tokyo