-
1
-
-
77958199188
-
Epigenetic cancer therapy: Proof of concept and remaining challenges
-
1:CAS:528:DC%2BC3cXhsFOns77K 21154865
-
Mund C, Lyko F. Epigenetic cancer therapy: proof of concept and remaining challenges. Bioessays. 2010;32:949-57.
-
(2010)
Bioessays
, vol.32
, pp. 949-957
-
-
Mund, C.1
Lyko, F.2
-
2
-
-
65449160927
-
Inhibition of histone deacetylases: A pharmacological approach to the treatment of non-cancer disorders
-
1:CAS:528:DC%2BD1MXntVCitro%3D 19355990
-
Wiech NL, Fisher JF, Helquist P, Wiest O. Inhibition of histone deacetylases: a pharmacological approach to the treatment of non-cancer disorders. Curr Top Med Chem. 2009;9:257-71.
-
(2009)
Curr Top Med Chem
, vol.9
, pp. 257-271
-
-
Wiech, N.L.1
Fisher, J.F.2
Helquist, P.3
Wiest, O.4
-
3
-
-
27644597195
-
Comparison of biological effects of non-nucleoside DNA methylation inhibitors versus 5-aza-2′-deoxycytidine
-
1:CAS:528:DC%2BD2MXhtFWhtLjK 16227400
-
Chuang JC, Yoo CB, Kwan JM, Li TW, Liang G, Yang AS, et al. Comparison of biological effects of non-nucleoside DNA methylation inhibitors versus 5-aza-2′-deoxycytidine. Mol Cancer Ther. 2005;4:1515-20.
-
(2005)
Mol Cancer Ther
, vol.4
, pp. 1515-1520
-
-
Chuang, J.C.1
Yoo, C.B.2
Kwan, J.M.3
Li, T.W.4
Liang, G.5
Yang, A.S.6
-
4
-
-
33645086120
-
Functional diversity of DNA methyltransferase inhibitors in human cancer cell lines
-
1:CAS:528:DC%2BD28XhvV2gtrY%3D 16510601
-
Stresemann C, Brueckner B, Musch T, Stopper H, Lyko F. Functional diversity of DNA methyltransferase inhibitors in human cancer cell lines. Cancer Res. 2006;66:2794-800.
-
(2006)
Cancer Res
, vol.66
, pp. 2794-2800
-
-
Stresemann, C.1
Brueckner, B.2
Musch, T.3
Stopper, H.4
Lyko, F.5
-
5
-
-
18944383889
-
5-Aza-deoxycytidine induces selective degradation of DNA methyltransferase 1 by a proteasomal pathway that requires the KEN box, bromo-adjacent homology domain, and nuclear localization signal
-
1:CAS:528:DC%2BD2MXkslemtb8%3D 15899874
-
Ghoshal K, Datta J, Majumder S, Bai S, Kutay H, Motiwala T, et al. 5-Aza-deoxycytidine induces selective degradation of DNA methyltransferase 1 by a proteasomal pathway that requires the KEN box, bromo-adjacent homology domain, and nuclear localization signal. Mol Cell Biol. 2005;25:4727-41.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 4727-4741
-
-
Ghoshal, K.1
Datta, J.2
Majumder, S.3
Bai, S.4
Kutay, H.5
Motiwala, T.6
-
6
-
-
84869850999
-
DNA methyltransferase inhibitors in cancer: A chemical and therapeutic patent overview and selected clinical studies
-
1:CAS:528:DC%2BC38Xhs12itb7N 23033952
-
Fahy J, Jeltsch A, Arimondo PB. DNA methyltransferase inhibitors in cancer: a chemical and therapeutic patent overview and selected clinical studies. Expert Opin Ther Pat. 2012;22:1427-42.
-
(2012)
Expert Opin Ther Pat
, vol.22
, pp. 1427-1442
-
-
Fahy, J.1
Jeltsch, A.2
Arimondo, P.B.3
-
7
-
-
60249094793
-
Mechanisms of resistance to 5-aza-2′-deoxycytidine in human cancer cell lines
-
1:CAS:528:DC%2BD1MXht1Wnsb8%3D 18931345
-
Qin T, Jelinek J, Si J, Shu J, Issa JP. Mechanisms of resistance to 5-aza-2′-deoxycytidine in human cancer cell lines. Blood. 2009;113:659-67.
-
(2009)
Blood
, vol.113
, pp. 659-667
-
-
Qin, T.1
Jelinek, J.2
Si, J.3
Shu, J.4
Issa, J.P.5
-
8
-
-
70350720044
-
MDS and secondary AML display unique patterns and abundance of aberrant DNA methylation
-
1:CAS:528:DC%2BD1MXhtlensb7E 19652201
-
Figueroa ME, Skrabanek L, Li Y, Jiemjit A, Fandy TE, Paietta E, et al. MDS and secondary AML display unique patterns and abundance of aberrant DNA methylation. Blood. 2009;114:3448-58.
-
(2009)
Blood
, vol.114
, pp. 3448-3458
-
-
Figueroa, M.E.1
Skrabanek, L.2
Li, Y.3
Jiemjit, A.4
Fandy, T.E.5
Paietta, E.6
-
9
-
-
84876444289
-
Genomic impact of transient low-dose decitabine treatment on primary AML cells
-
1:CAS:528:DC%2BC3sXjsFKmsLo%3D 23297133
-
Klco JM, Spencer DH, Lamprecht TL, Sarkaria SM, Wylie T, Magrini V, et al. Genomic impact of transient low-dose decitabine treatment on primary AML cells. Blood. 2013;121:1633-43.
-
(2013)
Blood
, vol.121
, pp. 1633-1643
-
-
Klco, J.M.1
Spencer, D.H.2
Lamprecht, T.L.3
Sarkaria, S.M.4
Wylie, T.5
Magrini, V.6
-
10
-
-
84866180518
-
Stem and progenitor cells in myelodysplastic syndromes show aberrant stage-specific expansion and harbor genetic and epigenetic alterations
-
1:CAS:528:DC%2BC38XhtlOmtrvM 22753872
-
Will B, Zhou L, Vogler TO, Ben-Neriah S, Schinke C, Tamari R, et al. Stem and progenitor cells in myelodysplastic syndromes show aberrant stage-specific expansion and harbor genetic and epigenetic alterations. Blood. 2012;120:2076-86.
-
(2012)
Blood
, vol.120
, pp. 2076-2086
-
-
Will, B.1
Zhou, L.2
Vogler, T.O.3
Ben-Neriah, S.4
Schinke, C.5
Tamari, R.6
-
11
-
-
0036324032
-
DNA hypomethylation, cancer, the immunodeficiency, centromeric region instability, facial anomalies syndrome and chromosomal rearrangements
-
1:CAS:528:DC%2BD38XmtF2qs74%3D 12163705
-
Ehrlich M. DNA hypomethylation, cancer, the immunodeficiency, centromeric region instability, facial anomalies syndrome and chromosomal rearrangements. J Nutr. 2002;132:2424S-9.
-
(2002)
J Nutr
, vol.132
, pp. 2424S-9
-
-
Ehrlich, M.1
-
12
-
-
84871195942
-
5-aza-2′-deoxycytidine-induced genome rearrangements are mediated by DNMT1
-
1:CAS:528:DC%2BC38XhvVamurjM 22349820
-
Maslov AY, Lee M, Gundry M, Gravina S, Strogonova N, Tazearslan C, et al. 5-aza-2′-deoxycytidine-induced genome rearrangements are mediated by DNMT1. Oncogene. 2012;31:5172-9.
-
(2012)
Oncogene
, vol.31
, pp. 5172-5179
-
-
Maslov, A.Y.1
Lee, M.2
Gundry, M.3
Gravina, S.4
Strogonova, N.5
Tazearslan, C.6
-
13
-
-
84876585121
-
Functional DNA demethylation is accompanied by chromatin accessibility
-
1:CAS:528:DC%2BC3sXlvVKisr4%3D 23408854
-
Pandiyan K, You JS, Yang X, Dai C, Zhou XJ, Baylin SB, et al. Functional DNA demethylation is accompanied by chromatin accessibility. Nucleic Acids Res. 2013;41:3973-85.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 3973-3985
-
-
Pandiyan, K.1
You, J.S.2
Yang, X.3
Dai, C.4
Zhou, X.J.5
Baylin, S.B.6
-
14
-
-
80555157482
-
Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome
-
1:CAS:528:DC%2BC3MXhsVKjsL%2FM 21957152
-
Suzuki M, Oda M, Ramos MP, Pascual M, Lau K, Stasiek E, et al. Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome. Genome Res. 2011;21:1833-40.
-
(2011)
Genome Res
, vol.21
, pp. 1833-1840
-
-
Suzuki, M.1
Oda, M.2
Ramos, M.P.3
Pascual, M.4
Lau, K.5
Stasiek, E.6
-
15
-
-
0028940587
-
Gene number, noise reduction and biological complexity
-
1:CAS:528:DyaK2MXksVCksLw%3D 7732579
-
Bird AP. Gene number, noise reduction and biological complexity. Trends Genet. 1995;11:94-100.
-
(1995)
Trends Genet
, vol.11
, pp. 94-100
-
-
Bird, A.P.1
-
16
-
-
33744938449
-
LUMA (LUminometric Methylation Assay)-a high throughput method to the analysis of genomic DNA methylation
-
1:CAS:528:DC%2BD28Xls1Gqs70%3D 16624287
-
Karimi M, Johansson S, Stach D, Corcoran M, Grander D, Schalling M, et al. LUMA (LUminometric Methylation Assay)-a high throughput method to the analysis of genomic DNA methylation. Exp Cell Res. 2006;312:1989-95.
-
(2006)
Exp Cell Res
, vol.312
, pp. 1989-1995
-
-
Karimi, M.1
Johansson, S.2
Stach, D.3
Corcoran, M.4
Grander, D.5
Schalling, M.6
-
17
-
-
70350653808
-
Transcriptome analysis by strand-specific sequencing of complementary DNA
-
Parkhomchuk D, Borodina T, Amstislavskiy V, Banaru M, Hallen L, Krobitsch S, et al. Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res. 2009;37:e123.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 123
-
-
Parkhomchuk, D.1
Borodina, T.2
Amstislavskiy, V.3
Banaru, M.4
Hallen, L.5
Krobitsch, S.6
-
18
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
1:CAS:528:DC%2BC3cXlsVyitLY%3D 20436464
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28:511-5.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
-
20
-
-
0034307008
-
Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
-
1:CAS:528:DC%2BD3cXntlOqt70%3D 11018013
-
Komarnitsky P, Cho EJ, Buratowski S. Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev. 2000;14:2452-60.
-
(2000)
Genes Dev
, vol.14
, pp. 2452-2460
-
-
Komarnitsky, P.1
Cho, E.J.2
Buratowski, S.3
-
21
-
-
31944432339
-
A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
-
1:CAS:528:DC%2BD28Xhs1Gnsrs%3D 16432200
-
Saxonov S, Berg P, Brutlag DL. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc Natl Acad Sci U S A. 2006;103:1412-7.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 1412-1417
-
-
Saxonov, S.1
Berg, P.2
Brutlag, D.L.3
-
22
-
-
0033822364
-
Large-scale human promoter mapping using CpG islands
-
1:CAS:528:DC%2BD3cXmsVKku70%3D 10973249
-
Ioshikhes IP, Zhang MQ. Large-scale human promoter mapping using CpG islands. Nat Genet. 2000;26:61-3.
-
(2000)
Nat Genet
, vol.26
, pp. 61-63
-
-
Ioshikhes, I.P.1
Zhang, M.Q.2
-
23
-
-
77954504873
-
Conserved role of intragenic DNA methylation in regulating alternative promoters
-
1:CAS:528:DC%2BC3cXosVKiu70%3D 20613842
-
Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, Fouse SD, et al. Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature. 2010;466:253-7.
-
(2010)
Nature
, vol.466
, pp. 253-257
-
-
Maunakea, A.K.1
Nagarajan, R.P.2
Bilenky, M.3
Ballinger, T.J.4
D'Souza, C.5
Fouse, S.D.6
-
24
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
1:CAS:528:DC%2BD2MXht1ShtrnO 16199517
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102:15545-50.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
-
25
-
-
42649112047
-
An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors
-
1:CAS:528:DC%2BD1cXltFylu7o%3D 18443585
-
Ben-Porath I, Thomson MW, Carey VJ, Ge R, Bell GW, Regev A, et al. An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors. Nat Genet. 2008;40:499-507.
-
(2008)
Nat Genet
, vol.40
, pp. 499-507
-
-
Ben-Porath, I.1
Thomson, M.W.2
Carey, V.J.3
Ge, R.4
Bell, G.W.5
Regev, A.6
-
26
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
2896277 1:CAS:528:DC%2BD1cXps1Sms7w%3D 18600261
-
Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, Sivachenko A, et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature. 2008;454:766-70.
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
Wernig, M.4
Hanna, J.5
Sivachenko, A.6
-
27
-
-
7544231794
-
Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells
-
1:CAS:528:DC%2BD2cXpt1ejsLs%3D 15467727
-
Lorincz MC, Dickerson DR, Schmitt M, Groudine M. Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells. Nat Struct Mol Biol. 2004;11:1068-75.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1068-1075
-
-
Lorincz, M.C.1
Dickerson, D.R.2
Schmitt, M.3
Groudine, M.4
-
28
-
-
84893664978
-
Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects
-
1:CAS:528:DC%2BC2cXisVGqu78%3D 24158655
-
Simon JM, Hacker KE, Singh D, Brannon AR, Parker JS, Weiser M, et al. Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects. Genome Res. 2014;24:241-50.
-
(2014)
Genome Res
, vol.24
, pp. 241-250
-
-
Simon, J.M.1
Hacker, K.E.2
Singh, D.3
Brannon, A.R.4
Parker, J.S.5
Weiser, M.6
-
29
-
-
0037742210
-
Discovery of novel targets for aberrant methylation in pancreatic carcinoma using high-throughput microarrays
-
1:CAS:528:DC%2BD3sXltVGqsr0%3D 12839967
-
Sato N, Fukushima N, Maitra A, Matsubayashi H, Yeo CJ, Cameron JL, et al. Discovery of novel targets for aberrant methylation in pancreatic carcinoma using high-throughput microarrays. Cancer Res. 2003;63:3735-42.
-
(2003)
Cancer Res
, vol.63
, pp. 3735-3742
-
-
Sato, N.1
Fukushima, N.2
Maitra, A.3
Matsubayashi, H.4
Yeo, C.J.5
Cameron, J.L.6
-
30
-
-
39149102515
-
Genome-wide transcriptional response to 5-aza-2′-deoxycytidine and trichostatin a in multiple myeloma cells
-
1:CAS:528:DC%2BD1cXoslah 18172295
-
Heller G, Schmidt WM, Ziegler B, Holzer S, Mullauer L, Bilban M, et al. Genome-wide transcriptional response to 5-aza-2′-deoxycytidine and trichostatin a in multiple myeloma cells. Cancer Res. 2008;68:44-54.
-
(2008)
Cancer Res
, vol.68
, pp. 44-54
-
-
Heller, G.1
Schmidt, W.M.2
Ziegler, B.3
Holzer, S.4
Mullauer, L.5
Bilban, M.6
-
31
-
-
44849114353
-
Subtypes of breast cancer show preferential site of relapse
-
1:CAS:528:DC%2BD1cXltlSmt7Y%3D 18451135
-
Smid M, Wang Y, Zhang Y, Sieuwerts AM, Yu J, Klijn JG, et al. Subtypes of breast cancer show preferential site of relapse. Cancer Res. 2008;68:3108-14.
-
(2008)
Cancer Res
, vol.68
, pp. 3108-3114
-
-
Smid, M.1
Wang, Y.2
Zhang, Y.3
Sieuwerts, A.M.4
Yu, J.5
Klijn, J.G.6
-
32
-
-
55249115818
-
Prediction of future metastasis and molecular characterization of head and neck squamous-cell carcinoma based on transcriptome and genome analysis by microarrays
-
1:CAS:528:DC%2BD1cXhtlSktLbI 18679425
-
Rickman DS, Millon R, De Reynies A, Thomas E, Wasylyk C, Muller D, et al. Prediction of future metastasis and molecular characterization of head and neck squamous-cell carcinoma based on transcriptome and genome analysis by microarrays. Oncogene. 2008;27:6607-22.
-
(2008)
Oncogene
, vol.27
, pp. 6607-6622
-
-
Rickman, D.S.1
Millon, R.2
De Reynies, A.3
Thomas, E.4
Wasylyk, C.5
Muller, D.6
-
33
-
-
11244258643
-
An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis
-
1:CAS:528:DC%2BD2cXhtFChsLzK 15608639
-
Sweet-Cordero A, Mukherjee S, Subramanian A, You H, Roix JJ, Ladd-Acosta C, et al. An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis. Nat Genet. 2005;37:48-55.
-
(2005)
Nat Genet
, vol.37
, pp. 48-55
-
-
Sweet-Cordero, A.1
Mukherjee, S.2
Subramanian, A.3
You, H.4
Roix, J.J.5
Ladd-Acosta, C.6
-
34
-
-
84907997839
-
Gene body methylation can alter gene expression and is a therapeutic target in cancer
-
1:CAS:528:DC%2BC2cXhs1agt77F 25263941
-
Yang X, Han H, De Carvalho DD, Lay FD, Jones PA, Liang G. Gene body methylation can alter gene expression and is a therapeutic target in cancer. Cancer Cell. 2014;26:577-90.
-
(2014)
Cancer Cell
, vol.26
, pp. 577-590
-
-
Yang, X.1
Han, H.2
De Carvalho, D.D.3
Lay, F.D.4
Jones, P.A.5
Liang, G.6
-
35
-
-
84887214395
-
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
-
1:CAS:528:DC%2BC3sXhslajs77I 23938295
-
Maunakea AK, Chepelev I, Cui K, Zhao K. Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition. Cell Res. 2013;23:1256-69.
-
(2013)
Cell Res
, vol.23
, pp. 1256-1269
-
-
Maunakea, A.K.1
Chepelev, I.2
Cui, K.3
Zhao, K.4
-
36
-
-
0032890965
-
The DNA, methylation paradox
-
1:CAS:528:DyaK1MXhtVKiurs%3D 10087932
-
Jones PA. The DNA, methylation paradox. Trends Genet. 1999;15:34-7.
-
(1999)
Trends Genet
, vol.15
, pp. 34-37
-
-
Jones, P.A.1
-
37
-
-
84867145980
-
On the presence and role of human gene-body DNA methylation
-
3380580 22577155
-
Jjingo D, Conley AB, Yi SV, Lunyak VV, Jordan IK. On the presence and role of human gene-body DNA methylation. Oncotarget. 2012;3:462-74.
-
(2012)
Oncotarget
, vol.3
, pp. 462-474
-
-
Jjingo, D.1
Conley, A.B.2
Yi, S.V.3
Lunyak, V.V.4
Jordan, I.K.5
-
38
-
-
33846576622
-
Epigenetic stem cell signature in cancer
-
1:CAS:528:DC%2BD2sXpvFektQ%3D%3D 17200673
-
Widschwendter M, Fiegl H, Egle D, Mueller-Holzner E, Spizzo G, Marth C, et al. Epigenetic stem cell signature in cancer. Nat Genet. 2007;39:157-8.
-
(2007)
Nat Genet
, vol.39
, pp. 157-158
-
-
Widschwendter, M.1
Fiegl, H.2
Egle, D.3
Mueller-Holzner, E.4
Spizzo, G.5
Marth, C.6
-
39
-
-
84890005056
-
Stem cell origin of myelodysplastic syndromes
-
1:CAS:528:DC%2BC3sXhvFentrrL 24336326
-
Elias HK, Schinke C, Bhattacharyya S, Will B, Verma A, Steidl U. Stem cell origin of myelodysplastic syndromes. Oncogene. 2014;33:5139-50.
-
(2014)
Oncogene
, vol.33
, pp. 5139-5150
-
-
Elias, H.K.1
Schinke, C.2
Bhattacharyya, S.3
Will, B.4
Verma, A.5
Steidl, U.6
-
40
-
-
84925426910
-
-
Myers lab ChIP-seq protocol. [ http://myers.hudsonalpha.org/documents/Myers%20Lab%20ChIPseq%20Protocol%20v041610.pdf ]
-
Myers Lab ChIP-seq Protocol
-
-
-
41
-
-
77950527721
-
Optimized design and data analysis of tag-based cytosine methylation assays
-
Suzuki M, Jing Q, Lia D, Pascual M, McLellan A, Greally JM. Optimized design and data analysis of tag-based cytosine methylation assays. Genome Biol. 2010;11:R36.
-
(2010)
Genome Biol
, vol.11
, pp. 36
-
-
Suzuki, M.1
Jing, Q.2
Lia, D.3
Pascual, M.4
McLellan, A.5
Greally, J.M.6
-
42
-
-
84869869703
-
The Wasp system: An open source environment for managing and analyzing genomic data
-
1:CAS:528:DC%2BC38XhtlOnsLrI 22944616
-
McLellan AS, Dubin RA, Jing Q, Broin PO, Moskowitz D, Suzuki M, et al. The Wasp system: an open source environment for managing and analyzing genomic data. Genomics. 2012;100:345-51.
-
(2012)
Genomics
, vol.100
, pp. 345-351
-
-
McLellan, A.S.1
Dubin, R.A.2
Jing, Q.3
Broin, P.O.4
Moskowitz, D.5
Suzuki, M.6
-
43
-
-
77951820899
-
Fast and SNP-tolerant detection of complex variants and splicing in short reads
-
1:CAS:528:DC%2BC3cXjvFyktLs%3D 20147302
-
Wu TD, Nacu S. Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics. 2010;26:873-81.
-
(2010)
Bioinformatics
, vol.26
, pp. 873-881
-
-
Wu, T.D.1
Nacu, S.2
-
44
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9:R137.
-
(2008)
Genome Biol
, vol.9
, pp. 137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
-
45
-
-
79953177468
-
Aligning short sequencing reads with Bowtie
-
Chapter 11:Unit 11.7. doi:10.1002/0471250953.bi1107s32. PubMed PMID: 21154709; PubMed Central PMCID: PMC3010897
-
Langmead B. Aligning short sequencing reads with Bowtie. Current protocols in bioinformatics/editoral board. 2010; Chapter 11:Unit 11.7. doi:10.1002/0471250953.bi1107s32. PubMed PMID: 21154709; PubMed Central PMCID: PMC3010897.
-
(2010)
Current Protocols in Bioinformatics/editoral Board
-
-
Langmead, B.1
-
46
-
-
0003410791
-
-
(eds) Springer-Verlag New York, Inc Secaucus, NJ, USA
-
Kohonen T, Schroeder MR, Huang TS, editors. Self-organizing maps. Secaucus, NJ, USA: Springer-Verlag New York, Inc; 2001.
-
(2001)
Self-organizing Maps
-
-
Kohonen, T.1
Schroeder, M.R.2
Huang, T.S.3
|