메뉴 건너뛰기




Volumn 324, Issue 2, 2015, Pages 104-113

Wiring for independence: Positive feedback motifs facilitate individuation of traits in development and evolution

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; BIOLOGICAL MODEL; EVOLUTION; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETIC VARIABILITY; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; PHENOTYPE; POPULATION GENETICS; QUANTITATIVE TRAIT LOCUS;

EID: 84925292778     PISSN: 15525007     EISSN: 15525015     Source Type: Journal    
DOI: 10.1002/jez.b.22612     Document Type: Note
Times cited : (9)

References (46)
  • 2
    • 34249079154 scopus 로고    scopus 로고
    • Network motifs: theory and experimental approaches
    • Alon U . 2007b. Network motifs: theory and experimental approaches. Nat Rev Genet 8:450-461.
    • (2007) Nat Rev Genet , vol.8 , pp. 450-461
    • Alon, U.1
  • 3
    • 34047133228 scopus 로고    scopus 로고
    • Simplicity in biology
    • Alon U . 2007c. Simplicity in biology. Nature 446:497.
    • (2007) Nature , vol.446 , pp. 497
    • Alon, U.1
  • 4
    • 17144456808 scopus 로고    scopus 로고
    • Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion
    • Becskei A, Seraphin B, Serrano L . 2001. Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. EMBO J 20:2528-2535.
    • (2001) EMBO J , vol.20 , pp. 2528-2535
    • Becskei, A.1    Seraphin, B.2    Serrano, L.3
  • 5
    • 64349094767 scopus 로고    scopus 로고
    • Tissue specificity and the human protein interaction network
    • Bossi A, Lehner B . 2009. Tissue specificity and the human protein interaction network. Mol Syst Biol 5:260.
    • (2009) Mol Syst Biol , vol.5 , pp. 260
    • Bossi, A.1    Lehner, B.2
  • 6
    • 84871966125 scopus 로고    scopus 로고
    • Multidimensional adaptive evolution of a feed-forward network and the illusion of compensation
    • Bullaughey K . 2013. Multidimensional adaptive evolution of a feed-forward network and the illusion of compensation. Evolution 67:49-65.
    • (2013) Evolution , vol.67 , pp. 49-65
    • Bullaughey, K.1
  • 7
    • 7244232837 scopus 로고    scopus 로고
    • Pleiotropic effects on mandibular morphology II: differential epistasis and genetic variation in morphological integration
    • Cheverud JM, Ehrich TH, Vaughn TT, et al. 2004. Pleiotropic effects on mandibular morphology II: differential epistasis and genetic variation in morphological integration. J Exp Zool B Mol Dev Evol 302:424-435.
    • (2004) J Exp Zool B Mol Dev Evol , vol.302 , pp. 424-435
    • Cheverud, J.M.1    Ehrich, T.H.2    Vaughn, T.T.3
  • 8
    • 33748773071 scopus 로고    scopus 로고
    • Feed-forward loop circuits as a side effect of genome evolution
    • Cordero OX, Hogeweg P . 2006. Feed-forward loop circuits as a side effect of genome evolution. Mol Biol Evol 23:1931-1936.
    • (2006) Mol Biol Evol , vol.23 , pp. 1931-1936
    • Cordero, O.X.1    Hogeweg, P.2
  • 9
    • 78049513394 scopus 로고    scopus 로고
    • An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients
    • Cotterell J, Sharpe J . 2010. An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients. Mol Syst Biol 6:425.
    • (2010) Mol Syst Biol , vol.6 , pp. 425
    • Cotterell, J.1    Sharpe, J.2
  • 10
    • 84861320913 scopus 로고    scopus 로고
    • Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements
    • Emera D, Casola C, Lynch VJ, et al. 2012. Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements. Mol Biol Evol 29:239-247.
    • (2012) Mol Biol Evol , vol.29 , pp. 239-247
    • Emera, D.1    Casola, C.2    Lynch, V.J.3
  • 11
    • 42349096534 scopus 로고    scopus 로고
    • Transposable elements and the evolution of regulatory networks
    • Feschotte C . 2008. Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9:397-405.
    • (2008) Nat Rev Genet , vol.9 , pp. 397-405
    • Feschotte, C.1
  • 12
    • 37549029474 scopus 로고    scopus 로고
    • DNA transposons and the evolution of eukaryotic genomes
    • Feschotte C, Pritham EJ . 2007. DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 41:331-368.
    • (2007) Annu Rev Genet , vol.41 , pp. 331-368
    • Feschotte, C.1    Pritham, E.J.2
  • 13
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force A, Lynch M, Pickett FB, et al. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3
  • 14
    • 20444419818 scopus 로고    scopus 로고
    • The origin of subfunctions and modular gene regulation
    • Force A, Cresko WA, Pickett FB, et al. 2005. The origin of subfunctions and modular gene regulation. Genetics 170:433-446.
    • (2005) Genetics , vol.170 , pp. 433-446
    • Force, A.1    Cresko, W.A.2    Pickett, F.B.3
  • 15
    • 72549097005 scopus 로고    scopus 로고
    • Epistasis in a quantitative trait captured by a molecular model of transcription factor interactions
    • Gertz J, Gerke JP, Cohen BA . 2010. Epistasis in a quantitative trait captured by a molecular model of transcription factor interactions. Theor Popul Biol 77:1-5.
    • (2010) Theor Popul Biol , vol.77 , pp. 1-5
    • Gertz, J.1    Gerke, J.P.2    Cohen, B.A.3
  • 16
    • 0015454185 scopus 로고
    • A theory of biological pattern formation
    • Gierer A, Meinhardt H . 1972. A theory of biological pattern formation. Kybernetik 30-39.
    • (1972) Kybernetik , pp. 30-39
    • Gierer, A.1    Meinhardt, H.2
  • 17
    • 33846581918 scopus 로고    scopus 로고
    • Statistical epistasis is a generic feature of gene regulatory networks
    • Gjuvsland AB, Hayes BJ, Omholt SW, Carlborg O . 2007a. Statistical epistasis is a generic feature of gene regulatory networks. Genetics 175:411-420.
    • (2007) Genetics , vol.175 , pp. 411-420
    • Gjuvsland, A.B.1    Hayes, B.J.2    Omholt, S.W.3    Carlborg, O.4
  • 18
    • 39049084334 scopus 로고    scopus 로고
    • Threshold-dominated regulation hides genetic variation in gene expression networks
    • Gjuvsland AB, Plahte E, Omholt SW . 2007b. Threshold-dominated regulation hides genetic variation in gene expression networks. BMC Syst Biol 1:57.
    • (2007) BMC Syst Biol , vol.1 , pp. 57
    • Gjuvsland, A.B.1    Plahte, E.2    Omholt, S.W.3
  • 19
    • 77949616789 scopus 로고    scopus 로고
    • Allele interaction-single locus genetics meets regulatory biology
    • Gjuvsland AB, Plahte E, Adnoy T, Omholt SW . 2010. Allele interaction-single locus genetics meets regulatory biology. PLoS ONE 5:e9379.
    • (2010) PLoS ONE , vol.5 , pp. e9379
    • Gjuvsland, A.B.1    Plahte, E.2    Adnoy, T.3    Omholt, S.W.4
  • 20
    • 81155159622 scopus 로고    scopus 로고
    • Order-preserving principles underlying genotype-phenotype maps ensure high additive proportions of genetic variance
    • Gjuvsland AB, Vik JO, Woolliams JA, Omholt SW . 2011. Order-preserving principles underlying genotype-phenotype maps ensure high additive proportions of genetic variance. J Evol Biol 24:2269-2279.
    • (2011) J Evol Biol , vol.24 , pp. 2269-2279
    • Gjuvsland, A.B.1    Vik, J.O.2    Woolliams, J.A.3    Omholt, S.W.4
  • 21
  • 22
    • 3042848952 scopus 로고    scopus 로고
    • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    • Han JD, Bertin N, Hao T, et al. 2004. Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430:88-93.
    • (2004) Nature , vol.430 , pp. 88-93
    • Han, J.D.1    Bertin, N.2    Hao, T.3
  • 23
    • 38349123116 scopus 로고    scopus 로고
    • Distance between AER and ZPA is defined by feed-forward loop and is stabilized by their feedback loop in vertebrate limb bud
    • Hirashima T, Iwasa Y, Morishita Y . 2008. Distance between AER and ZPA is defined by feed-forward loop and is stabilized by their feedback loop in vertebrate limb bud. Bull Math Biol 70:438-459.
    • (2008) Bull Math Biol , vol.70 , pp. 438-459
    • Hirashima, T.1    Iwasa, Y.2    Morishita, Y.3
  • 24
    • 84862070237 scopus 로고    scopus 로고
    • Maintaining differentiated cellular identity
    • Holmberg J, Perlmann T . 2012. Maintaining differentiated cellular identity. Nat Rev Genet 13:429-439.
    • (2012) Nat Rev Genet , vol.13 , pp. 429-439
    • Holmberg, J.1    Perlmann, T.2
  • 25
    • 68149176813 scopus 로고    scopus 로고
    • Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates
    • Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA . 2009. Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates. Genome Res 19:1404-1418.
    • (2009) Genome Res , vol.19 , pp. 1404-1418
    • Kassahn, K.S.1    Dang, V.T.2    Wilkins, S.J.3    Perkins, A.C.4    Ragan, M.A.5
  • 26
    • 77952701988 scopus 로고    scopus 로고
    • Dynamic network rewiring determines temporal regulatory functions in Drosophila melanogaster development processes
    • Kim MS, Kim JR, Cho KH . 2010. Dynamic network rewiring determines temporal regulatory functions in Drosophila melanogaster development processes. Bioessays 32:505-513.
    • (2010) Bioessays , vol.32 , pp. 505-513
    • Kim, M.S.1    Kim, J.R.2    Cho, K.H.3
  • 27
    • 84862163583 scopus 로고    scopus 로고
    • Spatiotemporal network motif reveals the biological traits of developmental gene regulatory networks in Drosophila melanogaster
    • Kim MS, Kim JR, Kim D, Lander AD, Cho KH . 2012. Spatiotemporal network motif reveals the biological traits of developmental gene regulatory networks in Drosophila melanogaster. BMC Syst Biol 6:31.
    • (2012) BMC Syst Biol , vol.6 , pp. 31
    • Kim, M.S.1    Kim, J.R.2    Kim, D.3    Lander, A.D.4    Cho, K.H.5
  • 28
    • 80052335666 scopus 로고    scopus 로고
    • Drosophila sex combs as a model of evolutionary innovations
    • Kopp A . 2011. Drosophila sex combs as a model of evolutionary innovations. Evol Dev 13:504-522.
    • (2011) Evol Dev , vol.13 , pp. 504-522
    • Kopp, A.1
  • 29
    • 4644326931 scopus 로고    scopus 로고
    • Genomic analysis of regulatory network dynamics reveals large topological changes
    • Luscombe NM, Babu MM, Yu H, et al. 2004. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431:308-312.
    • (2004) Nature , vol.431 , pp. 308-312
    • Luscombe, N.M.1    Babu, M.M.2    Yu, H.3
  • 30
    • 0037174670 scopus 로고    scopus 로고
    • Network motifs: simple building blocks of complex networks
    • Milo R, Shen-Orr S, Itzkovitz S, et al. 2002. Network motifs: simple building blocks of complex networks. Science 298:824-827.
    • (2002) Science , vol.298 , pp. 824-827
    • Milo, R.1    Shen-Orr, S.2    Itzkovitz, S.3
  • 31
    • 45549097452 scopus 로고    scopus 로고
    • Positive feedback in cellular control systems
    • Mitrophanov AY, Groisman EA . 2008. Positive feedback in cellular control systems. Bioessays 30:542-555.
    • (2008) Bioessays , vol.30 , pp. 542-555
    • Mitrophanov, A.Y.1    Groisman, E.A.2
  • 32
    • 84900992907 scopus 로고    scopus 로고
    • Design principles of stripe-forming motifs: the role of positive feedback
    • Munteanu A, Cotterell J, Sole RV, Sharpe J . 2014. Design principles of stripe-forming motifs: the role of positive feedback. Sci Rep 4:5003.
    • (2014) Sci Rep , vol.4 , pp. 5003
    • Munteanu, A.1    Cotterell, J.2    Sole, R.V.3    Sharpe, J.4
  • 33
    • 84866361701 scopus 로고    scopus 로고
    • Circuitry and dynamics of human transcription factor regulatory networks
    • Neph S, Stergachis AB, Reynolds A, et al. 2012. Circuitry and dynamics of human transcription factor regulatory networks. Cell 150:1274-1286.
    • (2012) Cell , vol.150 , pp. 1274-1286
    • Neph, S.1    Stergachis, A.B.2    Reynolds, A.3
  • 34
    • 0028149891 scopus 로고
    • A positive feedback loop coordinates growth and patterning in the vertebrate limb
    • Niswander L, Jeffrey S, Martin GR, Tickle C . 1994. A positive feedback loop coordinates growth and patterning in the vertebrate limb. Nature 371:609-612.
    • (1994) Nature , vol.371 , pp. 609-612
    • Niswander, L.1    Jeffrey, S.2    Martin, G.R.3    Tickle, C.4
  • 35
    • 0034046086 scopus 로고    scopus 로고
    • Gene regulatory networks generating the phenomena of additivity, dominance and epistasis
    • Omholt SW, Plahte E, Oyehaug L, Xiang K . 2000. Gene regulatory networks generating the phenomena of additivity, dominance and epistasis. Genetics 155:969-980.
    • (2000) Genetics , vol.155 , pp. 969-980
    • Omholt, S.W.1    Plahte, E.2    Oyehaug, L.3    Xiang, K.4
  • 36
    • 84861337090 scopus 로고    scopus 로고
    • A model of developmental evolution: Selection, pleiotropy and compensation
    • Pavlicev M, Wagner GP . 2012. A model of developmental evolution: Selection, pleiotropy and compensation. Trends Ecol Evol 27:316-322.
    • (2012) Trends Ecol Evol , vol.27 , pp. 316-322
    • Pavlicev, M.1    Wagner, G.P.2
  • 37
    • 37749014093 scopus 로고    scopus 로고
    • Genetic variation in pleiotropy: differential epistasis as a source of variation in the allometric relationship between long bone lengths and body weight
    • Pavlicev M, Kenney-Hunt JP, Norgard EA, et al. 2008. Genetic variation in pleiotropy: differential epistasis as a source of variation in the allometric relationship between long bone lengths and body weight. Evolution 62:199-213.
    • (2008) Evolution , vol.62 , pp. 199-213
    • Pavlicev, M.1    Kenney-Hunt, J.P.2    Norgard, E.A.3
  • 38
    • 84892556118 scopus 로고    scopus 로고
    • Genomic correlates of relationship QTL involved in fore- versus hind limb divergence in mice
    • Pavlicev M, Wagner GP, Noonan JP, Hallgrimsson B, Cheverud JM . 2013. Genomic correlates of relationship QTL involved in fore- versus hind limb divergence in mice. Genome Biol Evol 5:1926-1936.
    • (2013) Genome Biol Evol , vol.5 , pp. 1926-1936
    • Pavlicev, M.1    Wagner, G.P.2    Noonan, J.P.3    Hallgrimsson, B.4    Cheverud, J.M.5
  • 39
    • 0017635932 scopus 로고
    • Design of molecular control mechanisms and the demand for gene expression
    • Savageau MA . 1977. Design of molecular control mechanisms and the demand for gene expression. Proc Natl Acad Sci USA 74:5647-5651.
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 5647-5651
    • Savageau, M.A.1
  • 40
    • 77958068954 scopus 로고    scopus 로고
    • Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes
    • Simola DF, Francis C, Sniegowski PD, Kim J . 2010. Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes. Genome Biol 11:R105.
    • (2010) Genome Biol , vol.11 , pp. R105
    • Simola, D.F.1    Francis, C.2    Sniegowski, P.D.3    Kim, J.4
  • 41
    • 77953162975 scopus 로고    scopus 로고
    • Solving Differential Equations in R: Package deSolve
    • Soetaert K, Petzoldt T, Setzer RW . 2010. Solving Differential Equations in R: Package deSolve. J Stat Softw 33:1-25.
    • (2010) J Stat Softw , vol.33 , pp. 1-25
    • Soetaert, K.1    Petzoldt, T.2    Setzer, R.W.3
  • 42
    • 80052327342 scopus 로고    scopus 로고
    • Evolution of sex-specific traits through changes in HOX-dependent doublesex expression
    • Tanaka K, Barmina O, Sanders LE, Arbeitman MN, Kopp A . 2011. Evolution of sex-specific traits through changes in HOX-dependent doublesex expression. PLoS Biol 9:e1001131.
    • (2011) PLoS Biol , vol.9 , pp. e1001131
    • Tanaka, K.1    Barmina, O.2    Sanders, L.E.3    Arbeitman, M.N.4    Kopp, A.5
  • 44
    • 84861165394 scopus 로고    scopus 로고
    • Parameters in dynamic models of complex traits are containers of missing heritability
    • Wang Y, Gjuvsland AB, Vik JO, et al. 2012. Parameters in dynamic models of complex traits are containers of missing heritability. PLoS Comput Biol 8:e1002459.
    • (2012) PLoS Comput Biol , vol.8 , pp. e1002459
    • Wang, Y.1    Gjuvsland, A.B.2    Vik, J.O.3
  • 45
    • 84855896286 scopus 로고    scopus 로고
    • Evolvability of feed-forward loop architecture biases its abundance in transcription networks
    • Widder S, Sole R, Macia J . 2012. Evolvability of feed-forward loop architecture biases its abundance in transcription networks. BMC Syst Biol 6:7.
    • (2012) BMC Syst Biol , vol.6 , pp. 7
    • Widder, S.1    Sole, R.2    Macia, J.3
  • 46
    • 0345359924 scopus 로고    scopus 로고
    • A positive-feedback-based bistable 'memory module' that governs a cell fate decision
    • Xiong W, Ferrell JE, Jr. 2003. A positive-feedback-based bistable 'memory module' that governs a cell fate decision. Nature 426:460-465.
    • (2003) Nature , vol.426 , pp. 460-465
    • Xiong, W.1    Ferrell, J.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.