-
2
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese, C.R, Kandler, O, Wheelis, M.L. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 1990, 87, 4576–4579.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
3
-
-
0017693393
-
Classification of methanogenic bacteria by 16S ribosomal RNA characterization
-
Fox, C.E, Magrum, L.J, Balch, W.E, Wolfe, R.S, Woese, C.R. Classification of methanogenic bacteria by 16S ribosomal RNA characterization. Proc. Natl. Acad. Sci. USA 1977, 74, 4537–4541.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 4537-4541
-
-
Fox, C.E.1
Magrum, L.J.2
Balch, W.E.3
Wolfe, R.S.4
Woese, C.R.5
-
4
-
-
0017347967
-
Comarative cataloging of 16S ribosomal ribonucleic acid: Molecular approach to procaryotic systematics
-
Fox, G.E, Pechman, K.R, Woese, C.R. Comarative cataloging of 16S ribosomal ribonucleic acid: Molecular approach to procaryotic systematics. Int. J. Syst. Bacteriol. 1977, 27, 44–57.
-
(1977)
Int. J. Syst. Bacteriol
, vol.27
, pp. 44-57
-
-
Fox, G.E.1
Pechman, K.R.2
Woese, C.R.3
-
5
-
-
84943452530
-
-
The Bergey’s Manual Trust, 2nd ed, Volumes 1_5; Springer: New York, NY, USA, 2001–2012
-
The Bergey’s Manual Trust. Bergey’s Manual of Systematic bacteriology, 2nd ed, Volumes 1_5; Springer: New York, NY, USA, 2001–2012.
-
Bergey’s Manual of Systematic Bacteriology
-
-
-
6
-
-
24944587193
-
Towards a genome-based taxonomy for prokaryotes
-
Konstantinidis, K.T, Tiedje, J.M. Towards a genome-based taxonomy for prokaryotes. J. Bacteriol. 2005. 187, 6258–6264.
-
(2005)
J. Bacteriol
, vol.187
, pp. 6258-6264
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
7
-
-
1242335920
-
Whole genome prokaryote phylogeny without sequence alignment: A K-string composition approach
-
Qi, J, Wang, B, Hao, B. Whole genome prokaryote phylogeny without sequence alignment: A K-string composition approach. J. Mol. Evol. 2004, 58, 1–11.
-
(2004)
J. Mol. Evol
, vol.58
, pp. 1-11
-
-
Qi, J.1
Wang, B.2
Hao, B.3
-
8
-
-
3242889314
-
Prokaryote phylogeny without sequence alignment: From avoidance signature to composition distance
-
Hao, B, Qi, J. Prokaryote phylogeny without sequence alignment: From avoidance signature to composition distance. J. Bioinf. Comput. Biol. 2004, 2, doi:10.1142/S0219720004000442.
-
(2004)
J. Bioinf. Comput. Biol
, pp. 2
-
-
Hao, B.1
Qi, J.2
-
9
-
-
34648815169
-
Prokaryote phylogeny meets taxonomy: An exhaustive comparison of composition vector trees with systematic bacteriology. Sci
-
Gao, L, Qi, J, Sun, J, Hao, B. Prokaryote phylogeny meets taxonomy: An exhaustive comparison of composition vector trees with systematic bacteriology. Sci. China Life Sci. 2007, 50, 587–599.
-
(2007)
China Life Sci
, vol.50
, pp. 587-599
-
-
Gao, L.1
Qi, J.2
Sun, J.3
Hao, B.4
-
10
-
-
77956010453
-
Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations
-
Li, Q, Xu, Z, Hao, B. Composition vector approach to whole-genome-based prokaryotic phylogeny: Success and foundations. J. Biotech. 2010, 149, 115–119.
-
(2010)
J. Biotech
, vol.149
, pp. 115-119
-
-
Li, Q.1
Xu, Z.2
Hao, B.3
-
11
-
-
79952305249
-
Jackknife and bootstrap tests of the composition vector trees
-
Zuo, G, Xu, Z, Yu, H, Hao, B. Jackknife and bootstrap tests of the composition vector trees. Genomics Proteomics Bioinform. 2010, 8, 262–267.
-
(2010)
Genomics Proteomics Bioinform
, vol.8
, pp. 262-267
-
-
Zuo, G.1
Xu, Z.2
Yu, H.3
Hao, B.4
-
12
-
-
84895908023
-
CVTrees support the Bergey’s systematics and provide high resolution at species level and below
-
Hao, B. CVTrees support the Bergey’s systematics and provide high resolution at species level and below. Bull. BISMiS 2011, 2, 189–196.
-
(2011)
Bull. Bismis
, vol.2
, pp. 189-196
-
-
Hao, B.1
-
13
-
-
84874092517
-
Reclassification of Thermoproteus neutrophilus Stetter and Zillig 1989 as Pyrobaculum neutrophilum comb. Nov. based on phylogenetic analysis
-
Chan, P.P, Cozen, A.E, Lowe, T.M. Reclassification of Thermoproteus neutrophilus Stetter and Zillig 1989 as Pyrobaculum neutrophilum comb. nov., based on phylogenetic analysis. Int. J. Syst. Evol. Microbiol. 2013, 63, 751–759.
-
(2013)
Int. J. Syst. Evol. Microbiol.
, vol.63
, pp. 751-759
-
-
Chan, P.P.1
Cozen, A.E.2
Lowe, T.M.3
-
14
-
-
0036155782
-
The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification
-
Cavalier-Smith, T. The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. Int. J. Syst. Evol. Microbiol. 2002, 52, 7–76.
-
(2002)
Int. J. Syst. Evol. Microbiol
, vol.52
, pp. 7-76
-
-
Cavalier-Smith, T.1
-
15
-
-
0004320741
-
-
ASM Press: Washington, DC, USA
-
Lapage, S.P, Sneath, P.H.A, Lessel, E.F, Skerman, V.B.D, Seeliger, H.P.R, Clark, W. A. International Code of Nomenclature of Bacteria: Bacteriological Code 1990; ASM Press: Washington, DC, USA, 1992.
-
(1992)
International Code of Nomenclature of Bacteria: Bacteriological Code
, vol.1990
-
-
Lapage, S.P.1
Sneath, P.2
Lessel, E.F.3
Skerman, V.4
Seeliger, H.5
Clark, W.A.6
-
16
-
-
0034523247
-
Judicial Commission of the International Committee on Systematic Bacteriology
-
De Vos, P, Trüper, H.G. Judicial Commission of the International Committee on Systematic Bacteriology. Int. J. Syst. Evol. Microbiol. 2000, 50, 2239–2244.
-
(2000)
Int. J. Syst. Evol. Microbiol
, vol.50
, pp. 2239-2244
-
-
De Vos, P.1
Trüper, H.G.2
-
17
-
-
84924981780
-
-
The GOLD, Available online, accessed on 12 February 2015
-
The GOLD (Genomes On Line Database) site. Available online: https://gold.jgi-psf.org (accessed on 12 February 2015).
-
(Genomes on Line Database) Site
-
-
-
18
-
-
79960976808
-
-
PATRIC, Available online, accessed on 12 February 2015
-
PATRIC (Pathosystems Resource Integration Center). Available online: http://particbrc.org/portal/portal/patric/Genomes (accessed on 12 February 2015).
-
(Pathosystems Resource Integration Center)
-
-
-
19
-
-
84874667657
-
-
Available online, accessed on 27 February 2015
-
The NCBI FTP site. Available online: ftp://ftp.ncbi.nih.gov/genomes/Bacteria/ (accessed on 27 February 2015).
-
The NCBI FTP Site
-
-
-
20
-
-
67849101838
-
CVTree update: A newly designed phylogenetic study platform using composition vectors and whole genomes
-
Xu, Z, Hao, B. CVTree update: A newly designed phylogenetic study platform using composition vectors and whole genomes. Nucleic Acids Res. 2009, 37, 174–178.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 174-178
-
-
Xu, Z.1
Hao, B.2
-
21
-
-
84925017575
-
-
Available online, accessed on 25 February 2015
-
The much improved CVTree3 Web Server. Available online: http://tlife.fudan.edu.cn/cvtree3/ (accessed on 25 February 2015).
-
The Much Improved Cvtree3 Web Server
-
-
-
22
-
-
84925017574
-
-
Available online, accessed on 15 February 2015
-
The EBI Archaea genome list. Available online: http://www.ebi.ac.uk/genomes/archaea.html (accessed on 15 February 2015).
-
The EBI Archaea Genome List
-
-
-
24
-
-
0032499698
-
The universal ancestor
-
Woese, C. The universal ancestor. Proc. Natl. Acad, Sci. USA 1998, 95, 6854–6859.
-
(1998)
Proc. Natl. Acad, Sci. USA
, vol.95
, pp. 6854-6859
-
-
Woese, C.1
-
25
-
-
54349125857
-
Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences. Mol. Genet
-
Wagner, A; de la Chaus, N. Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences. Mol. Genet. Genomics 2008, 280, 397–408.
-
(2008)
Genomics
, vol.280
, pp. 397-408
-
-
Wagner, A.1
De La Chaus, N.2
-
26
-
-
3242890106
-
CVTree: A phylogenetic tree reconstruction tool based on whole genomes
-
Qi, J, Luo, H, Hao, B. CVTree: A phylogenetic tree reconstruction tool based on whole genomes. Nucleic Acids Res. 2004, 32, 45–47.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 45-47
-
-
Qi, J.1
Luo, H.2
Hao, B.3
-
27
-
-
84908553995
-
On K-peptide length in composition vector phylogeny of prokaryotes
-
Zuo, G, Li, Q, Hao, B. On K-peptide length in composition vector phylogeny of prokaryotes. Comput. Biol. Chem. 2014, 53, 166–173.
-
(2014)
Comput. Biol. Chem
, vol.53
, pp. 166-173
-
-
Zuo, G.1
Li, Q.2
Hao, B.3
-
28
-
-
84961597754
-
Whole-genome based prokaryotic branches in the Tree of Life
-
Long, M., Gu, H., Zhou, Z., Eds, High Education Press: Beijing, China
-
Hao, B. Whole-genome based prokaryotic branches in the Tree of Life. In Darwin’s Heritage Today: Proceedings of the Darwin 200 Beijing International Conference; Long, M., Gu, H., Zhou, Z., Eds, High Education Press: Beijing, China, 2010; pp. 102–113.
-
(2010)
Darwin’s Heritage Today: Proceedings of the Darwin 200 Beijing International Conference
, pp. 102-113
-
-
Hao, B.1
-
29
-
-
0000685441
-
Taxonomic Outline of the Archaea and Bacteria
-
2nd ed, Boone, D.R., Castenholz, R.W., Eds, Springer: New York, NY, USA
-
Garrity, G.M, Holt, J.G. Taxonomic Outline of the Archaea and Bacteria. In Bergey’s Manual of Systematic Bacteriology, 2nd ed, Boone, D.R., Castenholz, R.W., Eds, Springer: New York, NY, USA, 2001; Volume 1, pp. 155–156.
-
(2001)
Bergey’s Manual of Systematic Bacteriology
, vol.1
, pp. 155-156
-
-
Garrity, G.M.1
Holt, J.G.2
-
30
-
-
84891817929
-
LPSN—list of prokaryotic names with standing in Nomenclature
-
Parte, A.C. LPSN—list of prokaryotic names with standing in Nomenclature. Nucleic Acids Res. 2014, 42, 613–616.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 613-616
-
-
Parte, A.C.1
-
31
-
-
72149093242
-
Isolation of the anaerobic thermoacidophilic crenarchaeote Acidilobus saccharovorans sp. Nov. and proposal of Acidilobales ord. nov. including Acidilobaceae fam. nov. and Caldisphaeraceae fam. nov
-
Prokofeva, M.I, Kostrikina, N.A, Kolganova, T.V, Tourova, T.P, Lysenko, A.M, Lebedinsky, A.V, Bonch-Osmolovskaya1, F.A. Isolation of the anaerobic thermoacidophilic crenarchaeote Acidilobus saccharovorans sp. nov. and proposal of Acidilobales ord. nov., including Acidilobaceae fam. nov. and Caldisphaeraceae fam. nov. Int. J. Syst. Evol. Microbiol. 2009, 59, 3116–3122.
-
(2009)
Int. J. Syst. Evol. Microbiol
, vol.59
, pp. 3116-3122
-
-
Prokofeva, M.I.1
Kostrikina, N.A.2
Kolganova, T.V.3
Tourova, T.P.4
Lysenko, A.M.5
Lebedinsky, A.V.6
Bonch-Osmolovskaya, F.A.7
-
32
-
-
77956652897
-
Fervidicoccus fontis gen. Nov. sp. nov., an anaerobic, thermophilic crenarchaeote from terrestrial hot springs, and proposal of Fervidicoccaceae fam. nov. and Fervidicoccales ord. nov
-
Perevalova, A.A, Bidzhieva, S.K, Kublanov, I.V, Hinrichs, K.-U, Liu, X.L, Mardanov, A.V, Lebedinsky, A.V, Bonch-Osmolovskaya, E.A. Fervidicoccus fontis gen. nov., sp. nov., an anaerobic, thermophilic crenarchaeote from terrestrial hot springs, and proposal of Fervidicoccaceae fam. nov. and Fervidicoccales ord. nov. Int. J. Syst. Evol. Microbiol. 2010, 60, 2082–2088.
-
(2010)
Int. J. Syst. Evol. Microbiol
, vol.60
, pp. 2082-2088
-
-
Perevalova, A.A.1
Bidzhieva, S.K.2
Kublanov, I.V.3
Hinrichs, K.-U.4
Liu, X.L.5
Mardanov, A.V.6
Lebedinsky, A.V.7
Bonch-Osmolovskaya, E.A.8
-
33
-
-
33748198540
-
-
2nd ed, Springer: New York, NY, USA
-
Garrity, G.M, Bell, J.A, Lilburn, T.G. The Revised Roadmap to the Manual. In Bergey’s Manual of Systematic Bacteriology, 2nd ed, Springer: New York, NY, USA, 2005; Volume 2, Part A, pp. 159–187.
-
(2005)
The Revised Roadmap to the Manual. In Bergey’s Manual of Systematic Bacteriology
, vol.2
, pp. 159-187
-
-
Garrity, G.M.1
Bell, J.A.2
Lilburn, T.G.3
-
34
-
-
47249105592
-
Methanocella paludicola gen. Nov. sp. nov., a methane-producing archaeon, the first isolate of the lineage “Rice Cluster I”, and proposal of the new archaeal order Methanocellales ord. nov
-
Sakai, S, Imachi, H, Hanada, S, Ohashi, A, Harada1, H, Kamagata, Y. Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage “Rice Cluster I”, and proposal of the new archaeal order Methanocellales ord. nov. Int. J. Syst. Evol. Microbiol. 2008, 58, 929–936.
-
(2008)
Int. J. Syst. Evol. Microbiol
, vol.58
, pp. 929-936
-
-
Sakai, S.1
Imachi, H.2
Hanada, S.3
Ohashi, A.4
Harada, H.5
Kamagata, Y.6
-
35
-
-
84925321451
-
Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: A proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov
-
Gupta, R.S, Naushad, S, Baker, S. Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: A proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov. Int. J. Syst. Evol. Microbiol. 2014, doi:10.1099/ijs.0.070136-0.
-
(2014)
Int. J. Syst. Evol. Microbiol
-
-
Gupta, R.S.1
Naushad, S.2
Baker, S.3
-
36
-
-
0029832927
-
Perspectives on archaeal diversity, thermophyly and monophyly from environmental rRNA sequences
-
Barns, S.M, Delwiche, C.F, Palmer, J.D, Pace, N.R. Perspectives on archaeal diversity, thermophyly and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 1996, 93, 9188–9193.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
37
-
-
78651240242
-
16S rRNA phylogenetic analysis and quantification of Koarchaeota indigenous to the hot springs of Kamchatka
-
Auchtung, T.A, Shyndriayeva, G, Cavanaugh, C.M. 16S rRNA phylogenetic analysis and quantification of Koarchaeota indigenous to the hot springs of Kamchatka, Russia. Extremophiles 2011, 15, 105–116.
-
(2011)
Russia. Extremophiles
, vol.15
, pp. 105-116
-
-
Auchtung, T.A.1
Shyndriayeva, G.2
Cavanaugh, C.M.3
-
38
-
-
39149118031
-
Mesophilic crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota
-
Brochier-Armanet, C, Boussau, B, Gribaldo, S, Forterre, P. Mesophilic crenarchaeota: Proposal for a third archaeal phylum, the Thaumarchaeota. Nat. Rev. Microbiol. 2008, 6, 245–252.
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 245-252
-
-
Brochier-Armanet, C.1
Boussau, B.2
Gribaldo, S.3
Forterre, P.4
-
39
-
-
79952431206
-
Molecular signatures for the Crenarchaeota and Thaumarchaeota
-
Gupta, R.S, Shami, A. Molecular signatures for the Crenarchaeota and Thaumarchaeota. Antonie van Leeuwenhoek 2011, 99, 133–157.
-
(2011)
Antonie Van Leeuwenhoek
, vol.99
, pp. 133-157
-
-
Gupta, R.S.1
Shami, A.2
-
40
-
-
79959289950
-
The Thaumarchaeota: An emerging view of their phylogeny and ecophysiology
-
Pester, M, Schleper, C, Wagner, M. The Thaumarchaeota: An emerging view of their phylogeny and ecophysiology. Curr. Opin. Microbiol. 2011, 14, 300–308.
-
(2011)
Curr. Opin. Microbiol
, vol.14
, pp. 300-308
-
-
Pester, M.1
Schleper, C.2
Wagner, M.3
-
41
-
-
0037007636
-
A new phylum of Archaea represented by a nano-sized hyperthermophilic symbiont
-
Huber, H, Hohn, M.J, Rachel, R, Fuchs, T, Wimmer, V.C, Stetter, K.O. A new phylum of Archaea represented by a nano-sized hyperthermophilic symbiont. Nature 2002, 417, 63–67.
-
(2002)
Nature
, vol.417
, pp. 63-67
-
-
Huber, H.1
Hohn, M.J.2
Rachel, R.3
Fuchs, T.4
Wimmer, V.C.5
Stetter, K.O.6
-
42
-
-
0242300069
-
The genome of Nanoarchaeum equitan: Insights into early archaeal evolution and derived parasitism
-
Waters, E, Hohn, M.J, Ahel, I, Graham, D.E, Adams, M.D, Barnstead, M, Beeson, K.Y, Bibbs, L, Bolanos, R, Keller, M, et al. The genome of Nanoarchaeum equitan: Insights into early archaeal evolution and derived parasitism. Proc. Natl. Aad. Sci. USA 2003, 100, 12984–12988.
-
(2003)
Proc. Natl. Aad. Sci. USA
, vol.100
, pp. 12984-12988
-
-
Waters, E.1
Hohn, M.J.2
Ahel, I.3
Graham, D.E.4
Adams, M.D.5
Barnstead, M.6
Beeson, K.Y.7
Bibbs, L.8
Bolanos, R.9
Keller, M.10
-
43
-
-
84885402888
-
Yellowstone Lake Nanoarchaeota
-
Clingenpeel, S, Kan, J, Macur, R.E, Woyke, T, Lavalvo, D, Carley, J, Inskeep, W.P, Nealson, K, McDermott, T. Yellowstone Lake Nanoarchaeota. Front. Microbiol. 2013, 4, doi:10.3389/fmicb.2013.00274.
-
(2013)
Front. Microbiol
, pp. 4
-
-
Clingenpeel, S.1
Kan, J.2
Macur, R.E.3
Woyke, T.4
Lavalvo, D.5
Carley, J.6
Inskeep, W.P.7
Nealson, K.8
McDermott, T.9
-
44
-
-
79955598535
-
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
-
Nunoura1, T, Takaki, Y, Kakuta, J, Nishi, S, Sugahara, J, Kazama, H, Chee, G.-J, Hattori, M, Kanai, A, Atomi, H, et al. Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acids Res. 2011, 39, 3204–3223.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3204-3223
-
-
Nunoura, T.1
Takaki, Y.2
Kakuta, J.3
Nishi, S.4
Sugahara, J.5
Kazama, H.6
Chee, G.-J.7
Hattori, M.8
Kanai, A.9
Atomi, H.10
-
45
-
-
77952691194
-
Enegmatic, ultrasmall, uncultivated Archaea
-
Baker, B.J, Comolli, L.R, Dick, G.J, Hauser, L.J, Haytt, D, Dill, B.J, Land, M.L, VerBerkmoes, N.C, Hettich, R.L, Banfield, J.F. Enegmatic, ultrasmall, uncultivated Archaea. Proc. Natl. Acad. Sci. USA 2010, 107, 8806–8811.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 8806-8811
-
-
Baker, B.J.1
Comolli, L.R.2
Dick, G.J.3
Hauser, L.J.4
Haytt, D.5
Dill, B.J.6
Land, M.L.7
Verberkmoes, N.C.8
Hettich, R.L.9
Banfield, J.F.10
-
46
-
-
84894363922
-
Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses
-
Meng, J, Xu, J, Qin, D, He, Y, Xiao, X, Wang, F. Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses. ISME J. 2014, 8, 650–659.
-
(2014)
ISME J
, vol.8
, pp. 650-659
-
-
Meng, J.1
Xu, J.2
Qin, D.3
He, Y.4
Xiao, X.5
Wang, F.6
-
47
-
-
52149085893
-
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all se-quenced type strains
-
Yarza, P, Richter, M, Peplies, J, Euzéby, J, Amann, R, Schleifer, K.-H, Ludwig, W, Glöckner, F.O, Roselló-Móra, R. The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all se-quenced type strains. Syst. Appl. Microbiol. 2008, 31, 241–250.
-
(2008)
Syst. Appl. Microbiol
, vol.31
, pp. 241-250
-
-
Yarza, P.1
Richter, M.2
Peplies, J.3
Euzéby, J.4
Amann, R.5
Schleifer, K.-H.6
Ludwig, W.7
Glöckner, F.O.8
Roselló-Móra, R.9
-
48
-
-
77956884098
-
Update of the All-Species Living Tree project based on 16S and 23S rRNA sequence analysis
-
Yarza, P, Ludwig, W, Euzéby, J, Amann, R, Schleifer, K.-H, Glöckner, F.O, Rossweló-Móra, R. Update of the All-Species Living Tree project based on 16S and 23S rRNA sequence analysis. Syst. Appl. Microbiol. 2010, 33, 291–299.
-
(2010)
Syst. Appl. Microbiol.
, vol.33
, pp. 291-299
-
-
Yarza, P.1
Ludwig, W.2
Euzéby, J.3
Amann, R.4
Schleifer, K.-H.5
Glöckner, F.O.6
Rossweló-Móra, R.7
-
49
-
-
84891813947
-
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
-
Yilmaz, P, Wegener-Parfrey, L, Yarza, P, Gerken, J, Pruesse, E, Quast, C, Schweer, T, Peplies, J, Ludwig, W, Glöckner, F.O. The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks. Nucleic Acids Res. 2014, 42, 643–648.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 643-648
-
-
Yilmaz, P.1
Wegener-Parfrey, L.2
Yarza, P.3
Gerken, J.4
Pruesse, E.5
Quast, C.6
Schweer, T.7
Peplies, J.8
Ludwig, W.9
Glöckner, F.O.10
-
50
-
-
84925017572
-
-
Available online, accessed on 25 November 2014
-
LTPs115 web site. Available online: http://www.silva-arb.de/projects/livibg-tree/ (accessed on 25 November 2014).
-
Ltps115 Web Site
-
-
-
51
-
-
84925017571
-
-
Available online, accessed on 25 November 2014
-
LVTree Viewer. Available online: http://tlife.fudan.edu.cn/lvtree/ (accessed on 25 November 2014).
-
Lvtree Viewer
-
-
-
52
-
-
79959307333
-
Phylogeny and evolution of the Archaea: One hundred genomes later
-
Brochier-Armanet, C, Forterre, P, Gribaldo, S. Phylogeny and evolution of the Archaea: One hundred genomes later. Curr. Opin. Microbiol. 2011, 14, 274–281.
-
(2011)
Curr. Opin. Microbiol
, vol.14
, pp. 274-281
-
-
Brochier-Armanet, C.1
Forterre, P.2
Gribaldo, S.3
-
53
-
-
33747139434
-
A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents
-
Reysenbach, A.-L, Liu, Y, Banta, A.B, Beveridge, T.J, Kirshtein, J.D, Schouten, S, Tivey, M.K, von Damm, K.L, Voytek, M.A. A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents. Nature 2006, 422, 444–447.
-
(2006)
Nature
, vol.422
, pp. 444-447
-
-
Reysenbach, A.-L.1
Liu, Y.2
Banta, A.B.3
Beveridge, T.J.4
Kirshtein, J.D.5
Schouten, S.6
Tivey, M.K.7
Von Damm, K.L.8
Voytek, M.A.9
-
54
-
-
38049087631
-
Tetraether membrane lipids of Candidatus “Aciduliprofundum boonei”, a cultivated obligate thermoacidophilic euryarchaeote from deep-sea hydrothermal vents
-
Schouten, S, Baas, M, Hopmans, E.C, Reysenbach, A.-L, Sinninghe Damste, J.S. Tetraether membrane lipids of Candidatus “Aciduliprofundum boonei”, a cultivated obligate thermoacidophilic euryarchaeote from deep-sea hydrothermal vents. Extremophiles 2008, 12, 119–124.
-
(2008)
Extremophiles
, vol.12
, pp. 119-124
-
-
Schouten, S.1
Baas, M.2
Hopmans, E.C.3
Reysenbach, A.-L.4
Sinninghe Damste, J.S.5
-
55
-
-
82355180998
-
The archaeal “TACK” superphylum and the origin of eukaryotes
-
Guy, L, Ettema, T.J.G. The archaeal “TACK” superphylum and the origin of eukaryotes. Trends Micrbiol. 2011, 19, 580–587.
-
(2011)
Trends Micrbiol
, vol.19
, pp. 580-587
-
-
Guy, L.1
Ettema, T.2
-
56
-
-
77955521875
-
Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach. Chin. Sci
-
Sun, J, Xu, Z, Hao, B. Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach. Chin. Sci. Bull. 2010, 55, 2323–2328.
-
(2010)
Bull
, vol.55
, pp. 2323-2328
-
-
Sun, J.1
Xu, Z.2
Hao, B.3
-
57
-
-
0035749071
-
Bacterial molecular phylogeny using supertree approach
-
Daubin, V, Gouy, M, Perriére, G. Bacterial molecular phylogeny using supertree approach. Genome Inform. 2001, 12, 155–164.
-
(2001)
Genome Inform
, vol.12
, pp. 155-164
-
-
Daubin, V.1
Gouy, M.2
Perriére, G.3
-
58
-
-
0348044549
-
Genome tree constructed using five different approaches suggest new major bacterial clades
-
Wolf, Y.I, Rogiozin, I.B, Grishin, N.V, Tatusov, R.L, Koonin, E.V. Genome tree constructed using five different approaches suggest new major bacterial clades. BMC Evol. Biol. 2001, 1, doi:10.1186/1471-2148-1-8.
-
(2001)
BMC Evol. Biol
, pp. 1
-
-
Wolf, Y.I.1
Rogiozin, I.B.2
Grishin, N.V.3
Tatusov, R.L.4
Koonin, E.V.5
-
59
-
-
70349979453
-
Phylogeny of prokaryotes: Does it exist and why should we care?
-
Gribaldo, S, Brochier, C. Phylogeny of prokaryotes: Does it exist and why should we care? Res. Microbiol. 2009, 160, 513–521.
-
(2009)
Res. Microbiol
, vol.160
, pp. 513-521
-
-
Gribaldo, S.1
Brochier, C.2
-
60
-
-
84895904422
-
Geographic divergence of “Sulfolobus islandicus” strains assessed by genomic analyses including electronic DNA hybridization confirms they are geovars
-
Zuo, G, Hao, B, Staley, J.R. Geographic divergence of “Sulfolobus islandicus” strains assessed by genomic analyses including electronic DNA hybridization confirms they are geovars. Antonie van Leeuwenoek 2014, 105, 431–435.
-
(2014)
Antonie Van Leeuwenoek
, vol.105
, pp. 431-435
-
-
Zuo, G.1
Hao, B.2
Staley, J.R.3
|