Isolation of the anaerobic thermoacidophilic crenarchaeote Acidilobus saccharovorans sp. nov. and proposal of Acidilobales ord. nov., including Acidilobaceae fam. nov. and Caldisphaeraceae fam. nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 12, 2009, Pages 3116-3122

  Prokofeva, M I ^a   Kostrikina, N A ^a   Kolganova, T V ^b   Tourova, T P ^a   Lysenko, A M ^a   Lebedinsky, A V ^a   Bonch Osmolovskaya, E A ^a  

^a RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

^b INSTITUTE OF BIOENGINEERING   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ALCOHOL; HYDROGEN SULFIDE; LACTIC ACID; RNA 16S; SULFUR; THIOSULFATE;

ACIDILOBUS SACCHAROVORANS; ANAEROBIC GROWTH; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CULTURE MEDIUM; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; FERMENTATION; FLAGELLUM; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; TEMPERATURE SENSITIVITY; THERMAL SPRING; THERMOACIDOPHILIC ARCHAEON;

ANAEROBIOSIS; CRENARCHAEOTA; DNA, ARCHAEAL; DNA, RIBOSOMAL; HOT SPRINGS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S;

ACIDILOBUS; ACIDILOBUS ACETICUS; ARCHAEA; CALDISPHAERA; CALDISPHAERA LAGUNENSIS; CALDISPHAERACEAE; CRENARCHAEOTA; DESULFUROCOCCALES;

EID: 72149093242     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.010355-0     Document Type: Article

References (26)

1. Aoshima, M., Nishibe, Y., Hasegawa, M., Yamagishi, A. & Oshima, T. (1996). Cloning and sequencing of a gene encoding 16S ribosomal RNA from a novel hyperthermophilic archaebacterium NC12. Gene 180, 183-187.
2. Boyd, E. S., Jackson, R. A., Encarnasion, G., Zahn, J. A., Beard, T., Leavitt, W. D., Pi, Y., Zhang, C. L., Pearson, A. & Geesey, G. G. (2007). Isolation, characterization, and ecology of sulfur-respiring crenarchaea inhabiting acid-sulfate-chloride-containing geothermal spring in Yellowstone National Park. Appl Environ Microbiol 73, 6669-6677.
3. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
4. Galtier, N. & Lobry, J. R. (1997). Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes. J Mol Evol 44, 632-636.
5. Garrity, G. M., Bell, J. A. & Lilburn, T. (2005). The revised road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part A, pp. 159-187. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
6. Itoh, T., Suzuki, K. & Nakase, T. (1998). Thermocladium modestius gen. nov., sp. nov., a new genus of rod-shaped, extremely thermophilic crenarchaeote. Int J Syst Bacteriol 48, 879-887.
7. Itoh, T., Suzuki, K., Sanchez, P. C. & Nakase, T. (1999). Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines. Int J Syst Bacteriol 49, 1157-1163.
8. Itoh, T., Suzuki, K. & Nakase, T. (2002). Vulcanisaeta distributa gen. nov., sp. nov., and Vulcanisaeta souniana sp. nov., novel hyperthermophilic, rod-shaped crenarchaeotes isolated from hot springs in Japan. Int J Syst Evol Microbiol 52, 1097-1104.
9. Itoh, T., Suzuki, K., Sanchez, P. C. & Nakase, T. (2003). Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines. Int J Syst Evol Microbiol 53, 1149-1154.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
11. Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30, 3059-3066.
12. Kevbrin, V. V. & Zavarzin, G. A. (1992). The influence of sulfur compounds on the growth of halophilic homoacetic bacterium Acetohalobium arabaticum. Microbiology 61, 563-571 (English translation of Mikrobiologiia).
13. Korf, S. E., Macur, R. E., Nagy, A. M., Tayler, W. P., Kozubal, M. A., Ackerman, G., Masur, D. & Inskeep, W. P. (2006). Geochemical controls on microbial population distribution at Rainbow and Joseph's Coat hot springs in Yellowstone National Park (unpublished, reference in GenBank documents).
14. Lebedinsky, A. V., Chernyh, N. A. & Bonch-Osmolovskaya, E. A. (2007). Phylogenetic systematics of microorganisms inhabiting thermal environments. Biochemistry 72, 1299-1312.
15. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
16. Meyer-Dombard, D. R., Shock, E. L. & Amend, J. P. (2005). Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA. Geobiology 3, 211-227.
17. Owen, R. J., Hill, L. R. & Lapage, S. P. (1969). Determination of DNA base composition from melting profiles in dilute buffer. Biopolymers 7, 503-516.
18. Pearson, A., Pi, Y., Zhao, W., Li, W. J., Li, Y., Inskeep, W., Perevalova, A., Romanek, C., Li, S. & Zhang, C. L. (2008). Factors controlling the distribution of archaeal tetraethers in terrestrial hot springs. Appl Environ Microbiol 74, 3523-3532.
19. Perevalova, A. A., Kolganova, T. V., Birkeland, N.-K., Schleper, C., Bonch-Osmolovskaya, E. A. & Lebedinsky, A. V. (2008). Distribution of Crenarchaeote representatives in terrestrial hot springs of Russia and Iceland. Appl Environ Microbiol 74, 7620-7628.
20. Prokofeva, M. I., Miroshnichenko, M. L., Kostrikina, N. A., Chernyh, N. A., Kuznetsov, B. B., Tourova, T. P. & Bonch-Osmolovskaya, E. A. (2000). Acidilobus aceticus gen. nov., sp. nov., a novel anaerobic thermoacidophilic archaeon from continental hot vents in Kamchatka. Int J Syst Evol Microbiol 50, 2001-2008.
21. Prokofeva, M. I., Kublanov, I. V., Nercessian, O., Tourova, T. P., Kolganova, T. V., Lebedinsky, A. V., Bonch-Osmolovskaya, E. A., Spring, S. & Jeanthon, C. (2005). Cultivated anaerobic acidophilic/ acidotolerant thermophiles from terrestrial and deep-sea hydrothermal habitats. Extremophiles 9, 437-448.
22. Reysenbach, A.-L., Liu, Y., Banta, A. B., Beveridge, T. J., Kirshtein, J. D., Schouten, S., Tivey, M. K., Von Damm, K. L. & Voytek, M. A. (2006). A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents. Nature 442, 444-447.
23. Segerer, A. H., Trincone, A., Gahrtz, M. & Stetter, K. O. (1991). Stygiolobus azoricus gen., sp. nov. represents a novel genus of anaerobic, extremely thermoacidophilic archaebacteria of the order Sulfolobales. Int J Syst Bacteriol 41, 495-501.
24. Siering, P. L., Clarke, J. M. & Wilson, M. S. (2006). Geochemical and biological diversity in acidic, hot springs in Lassen Volcanic National Park. Geomicrobiol J 23, 129-141.
25. Van de Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biol Sci 10, 569-570.
26. Wolin, E. A., Wolin, M. J. & Wolfe, R. S. (1963). Formation of methane by bacterial extracts. J Biol Chem 238, 2882-2888.