-
1
-
-
84884949156
-
A current perspective on daptomycin for the clinical microbiologist
-
Humphries, R.M., Pollett, S. & Sakoulas, G. A current perspective on daptomycin for the clinical microbiologist. Clin. Microbiol. Rev. 26, 759-780 (2013).
-
(2013)
Clin. Microbiol. Rev
, vol.26
, pp. 759-780
-
-
Humphries, R.M.1
Pollett, S.2
Sakoulas, G.3
-
2
-
-
84870918230
-
Ribosomally synthesized and post-translationally modified peptide natural products: Overview and recommendations for a universal nomenclature
-
Arnison, P.G. et al. Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. Nat. Prod. Rep. 30, 108-160 (2013).
-
(2013)
Nat. Prod. Rep
, vol.30
, pp. 108-160
-
-
Arnison, P.G.1
-
3
-
-
68149132445
-
Structural insights into nonribosomal peptide enzymatic assembly lines
-
Koglin, A. & Walsh, C.T. Structural insights into nonribosomal peptide enzymatic assembly lines. Nat. Prod. Rep. 26, 987-1000 (2009).
-
(2009)
Nat. Prod. Rep
, vol.26
, pp. 987-1000
-
-
Koglin, A.1
Walsh, C.T.2
-
4
-
-
84863612987
-
Ribosome-independent biosynthesis of biologically active peptides: Application of synthetic biology to generate structural diversity
-
Giessen, T.W. & Marahiel, M.A. Ribosome-independent biosynthesis of biologically active peptides: application of synthetic biology to generate structural diversity. FEBS Lett. 586, 2065-2075 (2012).
-
(2012)
FEBS Lett
, vol.586
, pp. 2065-2075
-
-
Giessen, T.W.1
Marahiel, M.A.2
-
5
-
-
84865335226
-
A stand-alone adenylation domain forms amide bonds in streptothricin biosynthesis
-
Maruyama, C. et al. A stand-alone adenylation domain forms amide bonds in streptothricin biosynthesis. Nat. Chem. Biol. 8, 791-797 (2012).
-
(2012)
Nat. Chem. Biol
, vol.8
, pp. 791-797
-
-
Maruyama, C.1
-
6
-
-
34548688717
-
A new family of ATP-dependent oligomerization-macrocyclization biocatalysts
-
Kadi, N., Oves-Costales, D., Barona-Gomez, F. & Challis, G.L. A new family of ATP-dependent oligomerization-macrocyclization biocatalysts. Nat. Chem. Biol. 3, 652-656 (2007).
-
(2007)
Nat. Chem. Biol
, vol.3
, pp. 652-656
-
-
Kadi, N.1
Oves-Costales, D.2
Barona-Gomez, F.3
Challis, G.L.4
-
7
-
-
0023893794
-
Mode of action of deoxypheganomycin D on Mycobacterium smegmatis ATCC 607
-
Suzukake-Tsuchiya, K., Hori, M., Shimada, N. & Hamada, M. Mode of action of deoxypheganomycin D on Mycobacterium smegmatis ATCC 607. J. Antibiot. (Tokyo) 41, 675-683 (1988).
-
(1988)
J. Antibiot. (Tokyo)
, vol.41
, pp. 675-683
-
-
Suzukake-Tsuchiya, K.1
Hori, M.2
Shimada, N.3
Hamada, M.4
-
8
-
-
84868118472
-
Identification and characterisation of the gene cluster for the anti-MRSA antibiotic bottromycin: Expanding the biosynthetic diversity of ribosomal peptides
-
Crone, W.J.K., Leeper, F.J. & Truman, A.W. Identification and characterisation of the gene cluster for the anti-MRSA antibiotic bottromycin: expanding the biosynthetic diversity of ribosomal peptides. Chemical Science 3, 3516-3521 (2012).
-
(2012)
Chemical Science
, vol.3
, pp. 3516-3521
-
-
Crone, W.J.K.1
Leeper, F.J.2
Truman, A.W.3
-
9
-
-
84868104639
-
Synthetic biotechnology to study and engineer ribosomal bottromycin biosynthesis
-
Huo, L., Rachid, S., Stadler, M., Wenzel, S.C. & Muller, R. Synthetic biotechnology to study and engineer ribosomal bottromycin biosynthesis. Chem. Biol. 19, 1278-1287 (2012).
-
(2012)
Chem. Biol
, vol.19
, pp. 1278-1287
-
-
Huo, L.1
Rachid, S.2
Stadler, M.3
Wenzel, S.C.4
Muller, R.5
-
11
-
-
43749113148
-
A global assembly line for cyanobactins
-
Donia, M.S., Ravel, J. & Schmidt, E.W. A global assembly line for cyanobactins. Nat. Chem. Biol. 4, 341-343 (2008).
-
(2008)
Nat. Chem. Biol
, vol.4
, pp. 341-343
-
-
Donia, M.S.1
Ravel, J.2
Schmidt, E.W.3
-
12
-
-
0035910072
-
Glycopeptide antibiotic biosynthesis: Enzymatic assembly of the dedicated amino acid monomer (S)-3,5-dihydroxyphenylglycine
-
Chen, H., Tseng, C.C., Hubbard, B.K. & Walsh, C.T. Glycopeptide antibiotic biosynthesis: enzymatic assembly of the dedicated amino acid monomer (S)-3,5-dihydroxyphenylglycine. Proc. Natl. Acad. Sci. USA 98, 14901-14906 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14901-14906
-
-
Chen, H.1
Tseng, C.C.2
Hubbard, B.K.3
Walsh, C.T.4
-
13
-
-
0023849634
-
Replacement of Streptomyces hygroscopicus genomic segments with in vitro altered DNA sequences
-
Anzai, H. et al. Replacement of Streptomyces hygroscopicus genomic segments with in vitro altered DNA sequences. J. Antibiot. (Tokyo) 41, 226-233 (1988).
-
(1988)
J. Antibiot. (Tokyo)
, vol.41
, pp. 226-233
-
-
Anzai, H.1
-
14
-
-
80053569410
-
The ATP-grasp enzymes
-
Fawaz, M.V., Topper, M.E. & Firestine, S.M. The ATP-grasp enzymes. Bioorg. Chem. 39, 185-191 (2011).
-
(2011)
Bioorg. Chem
, vol.39
, pp. 185-191
-
-
Fawaz, M.V.1
Topper, M.E.2
Firestine, S.M.3
-
15
-
-
0027530140
-
Three-dimensional structure of the glutathione synthetase from Escherichia coli B at 2.0 Å resolution
-
Yamaguchi, H. et al. Three-dimensional structure of the glutathione synthetase from Escherichia coli B at 2.0 Å resolution. J. Mol. Biol. 229, 1083-1100 (1993).
-
(1993)
J. Mol. Biol
, vol.229
, pp. 1083-1100
-
-
Yamaguchi, H.1
-
16
-
-
0028860295
-
A common fold for peptide synthetases cleaving ATP to ADP: Glutathione synthetase and D-alanine:D-alanine ligase of Escherichia coli
-
Fan, C., Moews, P.C., Shi, Y., Walsh, C.T. & Knox, J.R. A common fold for peptide synthetases cleaving ATP to ADP: glutathione synthetase and D-alanine:D-alanine ligase of Escherichia coli. Proc. Natl. Acad. Sci. USA 92, 1172-1176 (1995).
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 1172-1176
-
-
Fan, C.1
Moews, P.C.2
Shi, Y.3
Walsh, C.T.4
Knox, J.R.5
-
17
-
-
22544447354
-
YwfE in Bacillus subtilis codes for a novel enzyme, L-amino acid ligase
-
Tabata, K., Ikeda, H. & Hashimoto, S. ywfE in Bacillus subtilis codes for a novel enzyme, L-amino acid ligase. J. Bacteriol. 187, 5195-5202 (2005).
-
(2005)
J. Bacteriol
, vol.187
, pp. 5195-5202
-
-
Tabata, K.1
Ikeda, H.2
Hashimoto, S.3
-
18
-
-
75649144445
-
A novel L-amino acid ligase from Bacillus subtilis NBRC3134 catalyzed oligopeptide synthesis
-
Kino, K., Arai, T. & Tateiwa, D. A novel L-amino acid ligase from Bacillus subtilis NBRC3134 catalyzed oligopeptide synthesis. Biosci. Biotechnol. Biochem. 74, 129-134 (2010).
-
(2010)
Biosci. Biotechnol. Biochem
, vol.74
, pp. 129-134
-
-
Kino, K.1
Arai, T.2
Tateiwa, D.3
-
19
-
-
61649088165
-
Targeted engineering of the antibacterial peptide apidaecin, based on an in vivo monitoring assay system
-
Taguchi, S., Mita, K., Ichinohe, K. & Hashimoto, S. Targeted engineering of the antibacterial peptide apidaecin, based on an in vivo monitoring assay system. Appl. Environ. Microbiol. 75, 1460-1464 (2009).
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 1460-1464
-
-
Taguchi, S.1
Mita, K.2
Ichinohe, K.3
Hashimoto, S.4
-
20
-
-
0028871926
-
Dali: A network tool for protein structure comparison
-
Holm, L. & Sander, C. Dali: a network tool for protein structure comparison. Trends Biochem. Sci. 20, 478-480 (1995).
-
(1995)
Trends Biochem. Sci
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
21
-
-
77958037340
-
Crystal structure of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria
-
Sampei, G. et al. Crystal structure of glycinamide ribonucleotide synthetase, PurD, from thermophilic eubacteria. J. Biochem. 148, 429-438 (2010).
-
(2010)
J. Biochem
, vol.148
, pp. 429-438
-
-
Sampei, G.1
-
22
-
-
75149192731
-
Structural and functional studies of Aspergillus clavatus N5-carboxyaminoimidazole ribonucleotide synthetase
-
Thoden, J.B., Holden, H.M., Paritala, H. & Firestine, S.M. Structural and functional studies of Aspergillus clavatus N5-carboxyaminoimidazole ribonucleotide synthetase. Biochemistry 49, 752-760 (2010).
-
(2010)
Biochemistry
, vol.49
, pp. 752-760
-
-
Thoden, J.B.1
Holden, H.M.2
Paritala, H.3
Firestine, S.M.4
-
23
-
-
0037189553
-
PurT-encoded glycinamide ribonucleotide transformylase
-
Thoden, J.B., Firestine, S.M., Benkovic, S.J. & Holden, H.M. PurT-encoded glycinamide ribonucleotide transformylase. J. Biol. Chem. 277, 23898-23908 (2002).
-
(2002)
J. Biol. Chem
, vol.277
, pp. 23898-23908
-
-
Thoden, J.B.1
Firestine, S.M.2
Benkovic, S.J.3
Holden, H.M.4
-
24
-
-
84867835695
-
The structure of L-amino-acid ligase from Bacillus licheniformis
-
Suzuki, M. et al. The structure of L-amino-acid ligase from Bacillus licheniformis. Acta Crystallogr. D Biol. Crystallogr. 68, 1535-1540 (2012).
-
(2012)
Acta Crystallogr. D Biol. Crystallogr
, vol.68
, pp. 1535-1540
-
-
Suzuki, M.1
-
25
-
-
0032506054
-
X-ray crystal structure of glycinamide ribonucleotide synthetase from Escherichia coli
-
Wang, W., Kappock, T.J., Stubbe, J. & Ealick, S.E. X-ray crystal structure of glycinamide ribonucleotide synthetase from Escherichia coli. Biochemistry 37, 15647-15662 (1998).
-
(1998)
Biochemistry
, vol.37
, pp. 15647-15662
-
-
Wang, W.1
Kappock, T.J.2
Stubbe, J.3
Ealick, S.E.4
-
26
-
-
0033976458
-
The Pfam protein families database
-
Bateman, A. et al. The Pfam protein families database. Nucleic Acids Res. 28, 263-266 (2000).
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 263-266
-
-
Bateman, A.1
-
27
-
-
84878934964
-
Ubiquitin ligases and cell cycle control
-
Teixeira, L.K. & Reed, S.I. Ubiquitin ligases and cell cycle control. Annu. Rev. Biochem. 82, 387-414 (2013).
-
(2013)
Annu. Rev. Biochem
, vol.82
, pp. 387-414
-
-
Teixeira, L.K.1
Reed, S.I.2
-
28
-
-
0033618622
-
Staphylococcus aureus sortase, an enzyme that anchors surface proteins to the cell wall
-
Mazmanian, S.K., Liu, G., Ton-That, H. & Schneewind, O. Staphylococcus aureus sortase, an enzyme that anchors surface proteins to the cell wall. Science 285, 760-763 (1999).
-
(1999)
Science
, vol.285
, pp. 760-763
-
-
Mazmanian, S.K.1
Liu, G.2
Ton-That, H.3
Schneewind, O.4
-
29
-
-
0025226104
-
Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H+-adenosine triphosphatase
-
Kane, P.M. et al. Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H+-adenosine triphosphatase. Science 250, 651-657 (1990).
-
(1990)
Science
, vol.250
, pp. 651-657
-
-
Kane, P.M.1
-
30
-
-
84863012427
-
Modification of N-terminal α-amino groups of peptides and proteins using ketenes
-
Chan, A.O. et al. Modification of N-terminal α-amino groups of peptides and proteins using ketenes. J. Am. Chem. Soc. 134, 2589-2598 (2012).
-
(2012)
J. Am. Chem. Soc
, vol.134
, pp. 2589-2598
-
-
Chan, A.O.1
-
31
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong, S.E. & Mann, M. Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 1, 252-262 (2005).
-
(2005)
Nat. Chem. Biol
, vol.1
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
32
-
-
80053069963
-
N-terminal protein modification using simple aminoacyl transferase substrates
-
Wagner, A.M. et al. N-terminal protein modification using simple aminoacyl transferase substrates. J. Am. Chem. Soc. 133, 15139-15147 (2011).
-
(2011)
J. Am. Chem. Soc
, vol.133
, pp. 15139-15147
-
-
Wagner, A.M.1
-
33
-
-
84883019327
-
N-terminal labeling of peptides by trypsin-catalyzed ligation for quantitative proteomics
-
Pan, Y. et al. N-terminal labeling of peptides by trypsin-catalyzed ligation for quantitative proteomics. Angew. Chem. Int. Edn Engl. 52, 9205-9209 (2013).
-
(2013)
Angew. Chem. Int. Edn Engl
, vol.52
, pp. 9205-9209
-
-
Pan, Y.1
-
34
-
-
0033736728
-
Preparation of N-formamidinylamino acids from amino and formamidinesulfinic acids
-
Jursic, B.S., Neumann, D. & McPherson, A. Preparation of N-formamidinylamino acids from amino and formamidinesulfinic acids. Synthesis 32, 1656-1658 (2000).
-
(2000)
Synthesis
, vol.32
, pp. 1656-1658
-
-
Jursic, B.S.1
Neumann, D.2
McPherson, A.3
-
35
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R. & Birney, E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829 (2000).
-
(2000)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
36
-
-
59149090570
-
MetaGeneAnnotator: Detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes
-
Noguchi, H., Taniguchi, T. & Itoh, T. MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes. DNA Res. 15, 387-396 (2008).
-
(2008)
DNA Res
, vol.15
, pp. 387-396
-
-
Noguchi, H.1
Taniguchi, T.2
Itoh, T.3
-
37
-
-
0024419124
-
Cloning of genes governing the deoxysugar portion of the erythromycin biosynthesis pathway in Saccharopolyspora erythraea (Streptomyces erythreus)
-
Vara, J., Lewandowska-Skarbek, M., Wang, Y.G., Donadio, S. & Hutchinson, C.R. Cloning of genes governing the deoxysugar portion of the erythromycin biosynthesis pathway in Saccharopolyspora erythraea (Streptomyces erythreus). J. Bacteriol. 171, 5872-5881 (1989).
-
(1989)
J. Bacteriol
, vol.171
, pp. 5872-5881
-
-
Vara, J.1
Lewandowska-Skarbek, M.2
Wang, Y.G.3
Donadio, S.4
Hutchinson, C.R.5
-
39
-
-
0033732707
-
Single-wavelength anomalous diffraction phasing revisited
-
Rice, L.M., Earnest, T.N. & Brunger, A.T. Single-wavelength anomalous diffraction phasing revisited. Acta Crystallogr. D Biol. Crystallogr. 56, 1413-1420 (2000).
-
(2000)
Acta Crystallogr. D Biol. Crystallogr
, vol.56
, pp. 1413-1420
-
-
Rice, L.M.1
Earnest, T.N.2
Brunger, A.T.3
-
41
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P.D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
42
-
-
84860273177
-
Towars automated crystallographic structure refinement with phenix. Refine
-
Afonine, P.V. et al. Towars automated crystallographic structure refinement with phenix. refine. Acta Crystallogr. D Biol. Crystallogr. 68, 352-367 (2012).
-
(2012)
Acta Crystallogr. D Biol. Crystallogr
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
-
44
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V.B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
45
-
-
37049014272
-
Version 1.2 of the crystallography and NMR system
-
Brunger, A.T. Version 1.2 of the crystallography and NMR system. Nat. Protoc. 2, 2728-2733 (2007).
-
(2007)
Nat. Protoc
, vol.2
, pp. 2728-2733
-
-
Brunger, A.T.1
-
46
-
-
76149120388
-
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading
-
Trott, O. & Olson, A.J. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading. J. Comput. Chem. 31, 455-461 (2010).
-
(2010)
J. Comput. Chem
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
|