메뉴 건너뛰기




Volumn 62, Issue 5, 2013, Pages 1147-1156

Fast real-time detection of Potato spindle tuber viroid by RT-LAMP

Author keywords

Isothermal amplification; Melting curve; Potato; PSTVd; RT LAMP; Viroid

Indexed keywords

BIOASSAY; COST-BENEFIT ANALYSIS; DISEASE INCIDENCE; GENETIC ANALYSIS; PATHOGEN; POLYMERASE CHAIN REACTION; POTATO; REAL TIME;

EID: 84883742451     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/ppa.12017     Document Type: Article
Times cited : (46)

References (33)
  • 1
    • 79952088007 scopus 로고    scopus 로고
    • Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley
    • Bekele B, Hodgetts J, Tomlinson J et al., 2011. Use of a real-time LAMP isothermal assay for detecting 16SrII and XII phytoplasmas in fruit and weeds of the Ethiopian Rift Valley. Plant Pathology 60, 345-55.
    • (2011) Plant Pathology , vol.60 , pp. 345-355
    • Bekele, B.1    Hodgetts, J.2    Tomlinson, J.3
  • 2
    • 1642565081 scopus 로고    scopus 로고
    • Development of a real-time RT-PCR assay for the detection of Potato spindle tuber viroid
    • Boonham N, González Pérez L, Mendez MS et al., 2004. Development of a real-time RT-PCR assay for the detection of Potato spindle tuber viroid. Journal of Virological Methods 116, 139-46.
    • (2004) Journal of Virological Methods , vol.116 , pp. 139-146
    • Boonham, N.1    González Pérez, L.2    Mendez, M.S.3
  • 3
    • 40549109538 scopus 로고    scopus 로고
    • Quantification of the detrimental effect of a single primer-template mismatch by real-time PCR using the 16S rRNA gene as an example
    • Bru D, Martin-Laurent F, Philippot L, 2008. Quantification of the detrimental effect of a single primer-template mismatch by real-time PCR using the 16S rRNA gene as an example. Applied and Environmental Microbiology 74, 1660-3.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 1660-1663
    • Bru, D.1    Martin-Laurent, F.2    Philippot, L.3
  • 4
    • 84873712110 scopus 로고    scopus 로고
    • Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level
    • doi: 10.1111/j.1365-3059.2012.02654.x.
    • Buhlmann A, Pothier JF, Tomlinson JA et al., 2012. Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level. Plant Pathology. doi: 10.1111/j.1365-3059.2012.02654.x.
    • (2012) Plant Pathology
    • Buhlmann, A.1    Pothier, J.F.2    Tomlinson, J.A.3
  • 5
    • 33744819205 scopus 로고    scopus 로고
    • Viroids: an Ariadne's thread into the RNA labyrinth
    • Daros JA, Elena SF, Flores R, 2006. Viroids: an Ariadne's thread into the RNA labyrinth. EMBO Reporter 7, 593-8.
    • (2006) EMBO Reporter , vol.7 , pp. 593-598
    • Daros, J.A.1    Elena, S.F.2    Flores, R.3
  • 6
    • 0015108128 scopus 로고
    • Potato spindle tuber "virus": IV. A replicating, low molecular weight RNA
    • Diener TO, 1971. Potato spindle tuber "virus": IV. A replicating, low molecular weight RNA. Virology 45, 411-28.
    • (1971) Virology , vol.45 , pp. 411-428
    • Diener, T.O.1
  • 7
    • 79955045388 scopus 로고    scopus 로고
    • Robustness of a loop-mediated isothermal amplification reaction for diagnostic applications
    • Francois P, Tangomo M, Hibbs J et al., 2011. Robustness of a loop-mediated isothermal amplification reaction for diagnostic applications. FEMS Immunology and Medical Microbiology 62, 41-8.
    • (2011) FEMS Immunology and Medical Microbiology , vol.62 , pp. 41-48
    • Francois, P.1    Tangomo, M.2    Hibbs, J.3
  • 9
    • 0017821271 scopus 로고
    • Nucleotide sequence and secondary structure of potato spindle tuber viroid
    • Gross HJ, Domdey H, Lossow C et al., 1978. Nucleotide sequence and secondary structure of potato spindle tuber viroid. Nature 273, 203-8.
    • (1978) Nature , vol.273 , pp. 203-208
    • Gross, H.J.1    Domdey, H.2    Lossow, C.3
  • 10
    • 51849150462 scopus 로고    scopus 로고
    • Detection of Ralstonia solanacearum by loop-mediated isothermal amplification
    • Kubota R, Vine BG, Alvarez AM, Jenkins DM, 2008. Detection of Ralstonia solanacearum by loop-mediated isothermal amplification. Phytopathology 98, 1045-51.
    • (2008) Phytopathology , vol.98 , pp. 1045-1051
    • Kubota, R.1    Vine, B.G.2    Alvarez, A.M.3    Jenkins, D.M.4
  • 11
    • 0025305576 scopus 로고
    • Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies
    • Kwok S, Kellogg DE, McKinney N et al., 1990. Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucleic Acids Research 18, 999-1005.
    • (1990) Nucleic Acids Research , vol.18 , pp. 999-1005
    • Kwok, S.1    Kellogg, D.E.2    McKinney, N.3
  • 13
    • 5844251058 scopus 로고
    • Detection on polyacrylamide-gel of a diagnostic nucleic acid from tissue infected with potato spindle tuber viroid
    • Morris TJ, Wright NS, 1975. Detection on polyacrylamide-gel of a diagnostic nucleic acid from tissue infected with potato spindle tuber viroid. American Potato Journal 52, 57-63.
    • (1975) American Potato Journal , vol.52 , pp. 57-63
    • Morris, T.J.1    Wright, N.S.2
  • 15
    • 70450214042 scopus 로고    scopus 로고
    • Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction
    • Navarro B, Pantaleo V, Gisel A et al., 2009. Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction. PLoS ONE 4, e7686.
    • (2009) PLoS ONE , vol.4
    • Navarro, B.1    Pantaleo, V.2    Gisel, A.3
  • 17
    • 34548125369 scopus 로고    scopus 로고
    • Potato spindle tuber viroid: the simplicity paradox resolved?
    • Owens RA, 2007. Potato spindle tuber viroid: the simplicity paradox resolved? Molecular Plant Pathology 8, 549-60.
    • (2007) Molecular Plant Pathology , vol.8 , pp. 549-560
    • Owens, R.A.1
  • 18
    • 0001060266 scopus 로고
    • Sensitive and rapid diagnosis of potato spindle tuber viroid disease by nucleic acid hybridization
    • Owens RA, Diener TO, 1981. Sensitive and rapid diagnosis of potato spindle tuber viroid disease by nucleic acid hybridization. Science 213, 670-2.
    • (1981) Science , vol.213 , pp. 670-672
    • Owens, R.A.1    Diener, T.O.2
  • 19
    • 57049113703 scopus 로고    scopus 로고
    • Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases
    • Parida M, Sannarangaiah S, Dash PK, Rao PVL, Morita K, 2008. Loop mediated isothermal amplification (LAMP): a new generation of innovative gene amplification technique; perspectives in clinical diagnosis of infectious diseases. Reviews in Medical Virology 18, 407-21.
    • (2008) Reviews in Medical Virology , vol.18 , pp. 407-421
    • Parida, M.1    Sannarangaiah, S.2    Dash, P.K.3    Rao, P.V.L.4    Morita, K.5
  • 20
    • 0011639256 scopus 로고
    • Response of potato cultivars to infection by the potato spindle tuber viroid
    • Pfannenstiel MA, Slack SA, 1980. Response of potato cultivars to infection by the potato spindle tuber viroid. Phytopathology 70, 922-6.
    • (1980) Phytopathology , vol.70 , pp. 922-926
    • Pfannenstiel, M.A.1    Slack, S.A.2
  • 21
    • 0025488127 scopus 로고
    • A new strain of potato spindle tuber viroid (Pstvd-N) exhibits major sequence differences as compared to all other Pstvd strains sequenced so far
    • Puchta H, Herold T, Verhoeven K et al., 1990. A new strain of potato spindle tuber viroid (Pstvd-N) exhibits major sequence differences as compared to all other Pstvd strains sequenced so far. Plant Molecular Biology 15, 509-11.
    • (1990) Plant Molecular Biology , vol.15 , pp. 509-511
    • Puchta, H.1    Herold, T.2    Verhoeven, K.3
  • 22
    • 0029164108 scopus 로고
    • Detection of potato spindle tuber viroid in avocado growing in Peru
    • Querci M, Owens RA, Vargas C, Salazar LF, 1995. Detection of potato spindle tuber viroid in avocado growing in Peru. Plant Disease 79, 196-202.
    • (1995) Plant Disease , vol.79 , pp. 196-202
    • Querci, M.1    Owens, R.A.2    Vargas, C.3    Salazar, L.F.4
  • 23
    • 0001510299 scopus 로고
    • Correlation between structure and pathogenicity of potato spindle tuber viroid (PSTV)
    • Schnolzer M, Haas B, Ramm K, Hofmann H, Sanger HL, 1985. Correlation between structure and pathogenicity of potato spindle tuber viroid (PSTV). EMBO Journal 4, 2181-90.
    • (1985) EMBO Journal , vol.4 , pp. 2181-2190
    • Schnolzer, M.1    Haas, B.2    Ramm, K.3    Hofmann, H.4    Sanger, H.L.5
  • 24
    • 0002109222 scopus 로고    scopus 로고
    • Sensitive detection of potato spindle tuber viroid using RT-PCR and identification of a viroid variant naturally infecting pepino plants
    • Shamloul AM, Hadidi A, Zhu SF, Singh RP, Sagredo B, 1997. Sensitive detection of potato spindle tuber viroid using RT-PCR and identification of a viroid variant naturally infecting pepino plants. Canadian Journal of Plant Pathology 19, 89-96.
    • (1997) Canadian Journal of Plant Pathology , vol.19 , pp. 89-96
    • Shamloul, A.M.1    Hadidi, A.2    Zhu, S.F.3    Singh, R.P.4    Sagredo, B.5
  • 25
    • 59849096286 scopus 로고    scopus 로고
    • Studying the effect of single mismatches in primer and probe binding regions on amplification curves and quantification in real-time PCR
    • Suech B, Flekna G, Wagner M, Hein I, 2009. Studying the effect of single mismatches in primer and probe binding regions on amplification curves and quantification in real-time PCR. Journal of Microbiological Methods 76, 316-9.
    • (2009) Journal of Microbiological Methods , vol.76 , pp. 316-319
    • Suech, B.1    Flekna, G.2    Wagner, M.3    Hein, I.4
  • 26
    • 79957613599 scopus 로고    scopus 로고
    • mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, 2011. mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28, 2731-9.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 30
    • 79960891630 scopus 로고    scopus 로고
    • Mexican papita viroid and tomato planta macho viroid belong to a single species in the genus
    • Verhoeven JTJ, Roenhorst JW, Owens RA, 2011. Mexican papita viroid and tomato planta macho viroid belong to a single species in the genus. Pospiviroid. Archives of Virology 156, 1433-7.
    • (2011) Pospiviroid. Archives of Virology , vol.156 , pp. 1433-1437
    • Verhoeven, J.T.J.1    Roenhorst, J.W.2    Owens, R.A.3
  • 31
    • 12144291576 scopus 로고    scopus 로고
    • On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites
    • Wang MB, Bian XY, Wu LM et al., 2004. On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites. Proceedings of the National Academy of Sciences, USA 101, 3275-80.
    • (2004) Proceedings of the National Academy of Sciences, USA , vol.101 , pp. 3275-3280
    • Wang, M.B.1    Bian, X.Y.2    Wu, L.M.3
  • 32
    • 0031804808 scopus 로고    scopus 로고
    • A simple and rapid method for the detection of potato spindle tuber viroid (PSTVd) by RT-PCR
    • Weidemann HL, Buchta U, 1998. A simple and rapid method for the detection of potato spindle tuber viroid (PSTVd) by RT-PCR. Potato Research 41, 1-8.
    • (1998) Potato Research , vol.41 , pp. 1-8
    • Weidemann, H.L.1    Buchta, U.2
  • 33


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.