Complete atomistic model of a bacterial cytoplasm for integrating physics, biochemistry, and systems biology

Journal of Molecular Graphics and Modelling

Volumn 58, Issue , 2015, Pages 1-9

  Feig, Michael ^a,b,c   Harada, Ryuhei ^c,d   Mori, Takaharu ^c   Yu, Isseki ^c   Takahashi, Koichi ^e,f   Sugita, Yuji ^c,d  

^a Michigan State University   (United States)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c RIKEN   (Japan)

^d RIKEN Center for Computational Science   (Japan)

^e RIKEN Center for Biosystems Dynamics Research   (Japan)

^f KEIO UNIVERSITY   (Japan)

Author keywords

Crowding; Metabolic reaction network; Mycoplasma genitalium; Protein structure prediction

Indexed keywords

COMPLEX NETWORKS; CYTOLOGY; GENES; METABOLISM; METABOLITES; MOBILE SECURITY; PROTEINS;

ATOMISTIC MODELING; BACTERIAL CYTOPLASM; CROWDING; METABOLIC REACTIONS; MYCOPLASMA GENITALIUM; PROTEIN STRUCTURE PREDICTION; SIMULATION STUDIES; SYSTEMS BIOLOGY;

CELLS;

AMINO ACID TRANSFER RNA LIGASE; BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIAL RNA; CYTOPLASM PROTEIN; GLYCEROPHOSPHATE; ION; MESSENGER RNA; RIBOSOME RNA; RNA POLYMERASE; SOLVENT; TRANSFER RNA; UNTRANSLATED RNA;

ARTICLE; BACTERIAL CELL; BACTERIAL GENOME; BACTERIAL METABOLISM; BIOCHEMISTRY; COMPUTER SIMULATION; CONTROLLED STUDY; CYTOPLASM; MACROMOLECULE; METABOLOMICS; MOLECULAR DYNAMICS; MOLECULAR PHYSICS; MOLECULAR WEIGHT; MYCOPLASMA PNEUMONIAE; NONHUMAN; PENTOSE PHOSPHATE CYCLE; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN FOLDING; PROTEIN RNA BINDING; PROTEIN SECONDARY STRUCTURE; RNA PROCESSING; RNA STRUCTURE; SEQUENCE HOMOLOGY; STRUCTURAL BIOINFORMATICS; STRUCTURAL GENOMICS; STRUCTURAL HOMOLOGY; STRUCTURAL PROTEOMICS; SYSTEMS BIOLOGY; WHOLE CELL; BIOLOGICAL MODEL; CHEMISTRY; CYTOLOGY; GENETICS; METABOLISM; MYCOPLASMA GENITALIUM;

BACTERIA (MICROORGANISMS); MYCOPLASMA GENITALIUM;

BACTERIAL PROTEINS; CYTOPLASM; METABOLIC NETWORKS AND PATHWAYS; MODELS, BIOLOGICAL; MYCOPLASMA GENITALIUM;

EID: 84924303128     PISSN: 10933263     EISSN: 18734243     Source Type: Journal    
DOI: 10.1016/j.jmgm.2015.02.004     Document Type: Article

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