메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Genome-wide analysis of miRNA and mRNA transcriptomes during amelogenesis

Author keywords

Amelogenesis; Bioinformatics; Enamel maturation; Matrix mineralization; miRNA

Indexed keywords

LYSOSOME ASSOCIATED MEMBRANE PROTEIN 1; MESSENGER RNA; MICRORNA; MICRORNA 135A; MICRORNA 135B; MICRORNA 153; MICRORNA 21; MICRORNA 298; MICRORNA 31; MICRORNA 488; UNCLASSIFIED DRUG; LAMP1 PROTEIN, RAT; LYSOSOME ASSOCIATED MEMBRANE PROTEIN; TRANSCRIPTOME;

EID: 84924288657     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-998     Document Type: Article
Times cited : (40)

References (57)
  • 1
    • 0346743331 scopus 로고    scopus 로고
    • Ten Cate's Oral Histology Development, Structure and Function
    • 7th edition. St Louis, Missouri: Mosby Elsevier
    • Nanci A: Ten Cate's Oral Histology Development, Structure and Function. 7th edition. St Louis, Missouri: Mosby Elsevier; 2008.
    • (2008)
    • Nanci, A.1
  • 2
    • 84860438371 scopus 로고    scopus 로고
    • Amelogenesis imperfecta: an introduction
    • Gadhia K, McDonald S, Arkutu N, Malik K: Amelogenesis imperfecta: an introduction. Br Dent J 2012,212(8):377-379. 10.1038/sj.bdj.2012.314.
    • (2012) Br Dent J , vol.212 , Issue.8 , pp. 377-379
    • Gadhia, K.1    McDonald, S.2    Arkutu, N.3    Malik, K.4
  • 4
    • 33644788720 scopus 로고    scopus 로고
    • Genes and related proteins involved in amelogenesis imperfecta
    • Stephanopoulos G, Garefalaki ME, Lyroudia K: Genes and related proteins involved in amelogenesis imperfecta. J Dent Res 2005,84(12):1117-1126. 10.1177/154405910508401206.
    • (2005) J Dent Res , vol.84 , Issue.12 , pp. 1117-1126
    • Stephanopoulos, G.1    Garefalaki, M.E.2    Lyroudia, K.3
  • 5
    • 33845277788 scopus 로고    scopus 로고
    • The molecular etiologies and associated phenotypes of amelogenesis imperfecta
    • Wright JT: The molecular etiologies and associated phenotypes of amelogenesis imperfecta. Am J Med Genet Part A 2006,140(23):2547-2555.
    • (2006) Am J Med Genet Part A , vol.140 , Issue.23 , pp. 2547-2555
    • Wright, J.T.1
  • 8
    • 77951206889 scopus 로고    scopus 로고
    • Tooth morphogenesis and ameloblast differentiation are regulated by micro-RNAs
    • Michon F, Tummers M, Kyyronen M, Frilander MJ, Thesleff I: Tooth morphogenesis and ameloblast differentiation are regulated by micro-RNAs. Dev Biol 2010,340(2):355-368. 10.1016/j.ydbio.2010.01.019.
    • (2010) Dev Biol , vol.340 , Issue.2 , pp. 355-368
    • Michon, F.1    Tummers, M.2    Kyyronen, M.3    Frilander, M.J.4    Thesleff, I.5
  • 9
    • 84870597310 scopus 로고    scopus 로고
    • microRNA miR-34a regulates cytodifferentiation and targets multi-signaling pathways in human dental papilla cells
    • Wan M, Gao B, Sun F, Tang Y, Ye L, Fan Y, Klein OD, Zhou X, Zheng L: microRNA miR-34a regulates cytodifferentiation and targets multi-signaling pathways in human dental papilla cells. PLoS One 2012,7(11):e50090. 10.1371/journal.pone.0050090.
    • (2012) PLoS One , vol.7 , Issue.11 , pp. e50090
    • Wan, M.1    Gao, B.2    Sun, F.3    Tang, Y.4    Ye, L.5    Fan, Y.6    Klein, O.D.7    Zhou, X.8    Zheng, L.9
  • 10
    • 84875988471 scopus 로고    scopus 로고
    • miR-145 and miR-143 regulate odontoblast differentiation through targeting Klf4 and Osx genes in a feedback loop
    • Liu H, Lin H, Zhang L, Sun Q, Yuan G, Zhang L, Chen S, Chen Z: miR-145 and miR-143 regulate odontoblast differentiation through targeting Klf4 and Osx genes in a feedback loop. J Biol Chem 2013,288(13):9261-9271. 10.1074/jbc.M112.433730.
    • (2013) J Biol Chem , vol.288 , Issue.13 , pp. 9261-9271
    • Liu, H.1    Lin, H.2    Zhang, L.3    Sun, Q.4    Yuan, G.5    Zhang, L.6    Chen, S.7    Chen, Z.8
  • 11
    • 84871291245 scopus 로고    scopus 로고
    • MicroRNAome and expression profile of developing tooth germ in miniature pigs
    • Li A, Song T, Wang F, Liu D, Fan Z, Zhang C, He J, Wang S: MicroRNAome and expression profile of developing tooth germ in miniature pigs. PLoS One 2012,7(12):e52256. 10.1371/journal.pone.0052256.
    • (2012) PLoS One , vol.7 , Issue.12 , pp. e52256
    • Li, A.1    Song, T.2    Wang, F.3    Liu, D.4    Fan, Z.5    Zhang, C.6    He, J.7    Wang, S.8
  • 12
    • 80052530510 scopus 로고    scopus 로고
    • Expression of microRNAs in the stem cell niche of the adult mouse incisor
    • Jheon AH, Li CY, Wen T, Michon F, Klein OD: Expression of microRNAs in the stem cell niche of the adult mouse incisor. PLoS One 2011,6(9):e24536. 10.1371/journal.pone.0024536.
    • (2011) PLoS One , vol.6 , Issue.9 , pp. e24536
    • Jheon, A.H.1    Li, C.Y.2    Wen, T.3    Michon, F.4    Klein, O.D.5
  • 14
    • 0031968437 scopus 로고    scopus 로고
    • Cellular and chemical events during enamel maturation
    • Smith CE: Cellular and chemical events during enamel maturation. Crit Rev Oral Biol Med 1998,9(2):128-161. 10.1177/10454411980090020101.
    • (1998) Crit Rev Oral Biol Med , vol.9 , Issue.2 , pp. 128-161
    • Smith, C.E.1
  • 17
    • 84880617636 scopus 로고    scopus 로고
    • WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013
    • Web Server issue
    • Wang J, Duncan D, Shi Z, Zhang B: WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013. Nucleic Acids Res 2013,41(Web Server issue):W77-83.
    • (2013) Nucleic Acids Res , vol.41 , pp. W77-83
    • Wang, J.1    Duncan, D.2    Shi, Z.3    Zhang, B.4
  • 18
    • 23144464901 scopus 로고    scopus 로고
    • WebGestalt: an integrated system for exploring gene sets in various biological contexts
    • Web Server issue
    • Zhang B, Kirov S, Snoddy J: WebGestalt: an integrated system for exploring gene sets in various biological contexts. Nucleic Acids Res 2005,33(Web Server issue):W741-748.
    • (2005) Nucleic Acids Res , vol.33 , pp. W741-748
    • Zhang, B.1    Kirov, S.2    Snoddy, J.3
  • 19
    • 0026940505 scopus 로고
    • Maintenance of amelogenin gene expression by transformed epithelial cells of mouse enamel organ
    • Chen LS, Couwenhoven RI, Hsu D, Luo W, Snead ML: Maintenance of amelogenin gene expression by transformed epithelial cells of mouse enamel organ. Arch Oral Biol 1992,37(10):771-778. 10.1016/0003-9969(92)90110-T.
    • (1992) Arch Oral Biol , vol.37 , Issue.10 , pp. 771-778
    • Chen, L.S.1    Couwenhoven, R.I.2    Hsu, D.3    Luo, W.4    Snead, M.L.5
  • 21
    • 43049165907 scopus 로고    scopus 로고
    • MicroRNA expression profiling of the developing murine molar tooth germ and the developing murine submandibular salivary gland
    • Jevnaker AM, Osmundsen H: MicroRNA expression profiling of the developing murine molar tooth germ and the developing murine submandibular salivary gland. Arch Oral Biol 2008,53(7):629-645. 10.1016/j.archoralbio.2008.01.014.
    • (2008) Arch Oral Biol , vol.53 , Issue.7 , pp. 629-645
    • Jevnaker, A.M.1    Osmundsen, H.2
  • 22
    • 58149186499 scopus 로고    scopus 로고
    • miRecords: an integrated resource for microRNA-target interactions
    • Xiao F, Zuo Z, Cai G, Kang S, Gao X, Li T: miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res 2009, 37:D105-110. 10.1093/nar/gkn851.
    • (2009) Nucleic Acids Res , vol.37 , pp. D105-110
    • Xiao, F.1    Zuo, Z.2    Cai, G.3    Kang, S.4    Gao, X.5    Li, T.6
  • 24
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005,120(1):15-20. 10.1016/j.cell.2004.12.035.
    • (2005) Cell , vol.120 , Issue.1 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 25
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: determinants beyond seed pairing
    • Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP: MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 2007,27(1):91-105. 10.1016/j.molcel.2007.06.017.
    • (2007) Mol Cell , vol.27 , Issue.1 , pp. 91-105
    • Grimson, A.1    Farh, K.K.2    Johnston, W.K.3    Garrett-Engele, P.4    Lim, L.P.5    Bartel, D.P.6
  • 26
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman RC, Farh KK, Burge CB, Bartel DP: Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 2009,19(1):92-105.
    • (2009) Genome Res , vol.19 , Issue.1 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 27
    • 77955644289 scopus 로고    scopus 로고
    • Mammalian microRNAs predominantly act to decrease target mRNA levels
    • Guo H, Ingolia NT, Weissman JS, Bartel DP: Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 2010,466(7308):835-840. 10.1038/nature09267.
    • (2010) Nature , vol.466 , Issue.7308 , pp. 835-840
    • Guo, H.1    Ingolia, N.T.2    Weissman, J.S.3    Bartel, D.P.4
  • 33
    • 84904770746 scopus 로고    scopus 로고
    • MicroRNA and mRNA expression profiling in rat acute respiratory distress syndrome
    • Huang C, Xiao X, Chintagari NR, Breshears M, Wang Y, Liu L: MicroRNA and mRNA expression profiling in rat acute respiratory distress syndrome. BMC Med Genomics 2014, 7:46. 10.1186/1755-8794-7-46.
    • (2014) BMC Med Genomics , vol.7 , pp. 46
    • Huang, C.1    Xiao, X.2    Chintagari, N.R.3    Breshears, M.4    Wang, Y.5    Liu, L.6
  • 35
    • 84904077201 scopus 로고    scopus 로고
    • Micro-RNAs in regenerating lungs: an integrative systems biology analysis of murine influenza pneumonia
    • Tan KS, Choi H, Jiang X, Yin L, Seet JE, Patzel V, Engelward BP, Chow VT: Micro-RNAs in regenerating lungs: an integrative systems biology analysis of murine influenza pneumonia. BMC Genomics 2014, 15:587. 10.1186/1471-2164-15-587.
    • (2014) BMC Genomics , vol.15 , pp. 587
    • Tan, K.S.1    Choi, H.2    Jiang, X.3    Yin, L.4    Seet, J.E.5    Patzel, V.6    Engelward, B.P.7    Chow, V.T.8
  • 36
    • 34547872023 scopus 로고    scopus 로고
    • Beginning to understand microRNA function
    • Du T, Zamore PD: Beginning to understand microRNA function. Cell Res 2007,17(8):661-663. 10.1038/cr.2007.67.
    • (2007) Cell Res , vol.17 , Issue.8 , pp. 661-663
    • Du, T.1    Zamore, P.D.2
  • 38
    • 34547951375 scopus 로고    scopus 로고
    • MicroRNAs repress translation of m7Gppp-capped target mRNAs in vitro by inhibiting initiation and promoting deadenylation
    • Standart N, Jackson RJ: MicroRNAs repress translation of m7Gppp-capped target mRNAs in vitro by inhibiting initiation and promoting deadenylation. Genes Dev 2007,21(16):1975-1982. 10.1101/gad.1591507.
    • (2007) Genes Dev , vol.21 , Issue.16 , pp. 1975-1982
    • Standart, N.1    Jackson, R.J.2
  • 39
    • 33846277696 scopus 로고    scopus 로고
    • Repression of protein synthesis by miRNAs: how many mechanisms?
    • Pillai RS, Bhattacharyya SN, Filipowicz W: Repression of protein synthesis by miRNAs: how many mechanisms? Trends Cell Biol 2007,17(3):118-126. 10.1016/j.tcb.2006.12.007.
    • (2007) Trends Cell Biol , vol.17 , Issue.3 , pp. 118-126
    • Pillai, R.S.1    Bhattacharyya, S.N.2    Filipowicz, W.3
  • 41
    • 77950529656 scopus 로고    scopus 로고
    • The cystic fibrosis transmembrane conductance regulator (CFTR) is expressed in maturation stage ameloblasts, odontoblasts and bone cells
    • Bronckers A, Kalogeraki L, Jorna HJ, Wilke M, Bervoets TJ, Lyaruu DM, Zandieh-Doulabi B, Denbesten P, de Jonge H: The cystic fibrosis transmembrane conductance regulator (CFTR) is expressed in maturation stage ameloblasts, odontoblasts and bone cells. Bone 2010,46(4):1188-1196. 10.1016/j.bone.2009.12.002.
    • (2010) Bone , vol.46 , Issue.4 , pp. 1188-1196
    • Bronckers, A.1    Kalogeraki, L.2    Jorna, H.J.3    Wilke, M.4    Bervoets, T.J.5    Lyaruu, D.M.6    Zandieh-Doulabi, B.7    Denbesten, P.8    de Jonge, H.9
  • 43
    • 31544444139 scopus 로고    scopus 로고
    • Characterization of a mouse amelogenin [A-4]/M59 cell surface receptor
    • Tompkins K, George A, Veis A: Characterization of a mouse amelogenin [A-4]/M59 cell surface receptor. Bone 2006,38(2):172-180. 10.1016/j.bone.2005.08.013.
    • (2006) Bone , vol.38 , Issue.2 , pp. 172-180
    • Tompkins, K.1    George, A.2    Veis, A.3
  • 45
    • 0035983870 scopus 로고    scopus 로고
    • Cystic fibrosis transmembrane regulator gene (CFTR) is associated with abnormal enamel formation
    • Arquitt CK, Boyd C, Wright JT: Cystic fibrosis transmembrane regulator gene (CFTR) is associated with abnormal enamel formation. J Dent Res 2002,81(7):492-496. 10.1177/154405910208100712.
    • (2002) J Dent Res , vol.81 , Issue.7 , pp. 492-496
    • Arquitt, C.K.1    Boyd, C.2    Wright, J.T.3
  • 46
    • 80051786158 scopus 로고    scopus 로고
    • Enamel pathology resulting from loss of function in the cystic fibrosis transmembrane conductance regulator in a porcine animal model
    • Chang EH, Lacruz RS, Bromage TG, Bringas P Jr, Welsh MJ, Zabner J, Paine ML: Enamel pathology resulting from loss of function in the cystic fibrosis transmembrane conductance regulator in a porcine animal model. Cells Tissues Organs 2011,194(2-4):249-254.
    • (2011) Cells Tissues Organs , vol.194 , Issue.2-4 , pp. 249-254
    • Chang, E.H.1    Lacruz, R.S.2    Bromage, T.G.3    Bringas, P.4    Welsh, M.J.5    Zabner, J.6    Paine, M.L.7
  • 47
    • 0038388765 scopus 로고    scopus 로고
    • Altered pH regulation during enamel development in the cystic fibrosis mouse incisor
    • Sui W, Boyd C, Wright JT: Altered pH regulation during enamel development in the cystic fibrosis mouse incisor. J Dent Res 2003,82(5):388-392. 10.1177/154405910308200512.
    • (2003) J Dent Res , vol.82 , Issue.5 , pp. 388-392
    • Sui, W.1    Boyd, C.2    Wright, J.T.3
  • 49
    • 80052775652 scopus 로고    scopus 로고
    • Wnt5a plays a crucial role in determining tooth size during murine tooth development
    • Cai J, Mutoh N, Shin JO, Tani-Ishii N, Ohshima H, Cho SW, Jung HS: Wnt5a plays a crucial role in determining tooth size during murine tooth development. Cell Tissue Res 2011,345(3):367-377. 10.1007/s00441-011-1224-4.
    • (2011) Cell Tissue Res , vol.345 , Issue.3 , pp. 367-377
    • Cai, J.1    Mutoh, N.2    Shin, J.O.3    Tani-Ishii, N.4    Ohshima, H.5    Cho, S.W.6    Jung, H.S.7
  • 51
    • 78149234118 scopus 로고    scopus 로고
    • miR-21 and miR-31 converge on TIAM1 to regulate migration and invasion of colon carcinoma cells
    • Cottonham CL, Kaneko S, Xu L: miR-21 and miR-31 converge on TIAM1 to regulate migration and invasion of colon carcinoma cells. J Biol Chem 2010,285(46):35293-35302. 10.1074/jbc.M110.160069.
    • (2010) J Biol Chem , vol.285 , Issue.46 , pp. 35293-35302
    • Cottonham, C.L.1    Kaneko, S.2    Xu, L.3
  • 53
    • 2942697259 scopus 로고    scopus 로고
    • MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
    • Mallory AC, Dugas DV, Bartel DP, Bartel B: MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol 2004,14(12):1035-1046. 10.1016/j.cub.2004.06.022.
    • (2004) Curr Biol , vol.14 , Issue.12 , pp. 1035-1046
    • Mallory, A.C.1    Dugas, D.V.2    Bartel, D.P.3    Bartel, B.4
  • 54
    • 84898484796 scopus 로고    scopus 로고
    • Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases
    • [Epub ahead of print]
    • Zhang HM, Kuang S, Xiong X, Gao T, Liu C, Guo AY: Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases. Brief Bioinform 2013. [Epub ahead of print]
    • (2013) Brief Bioinform
    • Zhang, H.M.1    Kuang, S.2    Xiong, X.3    Gao, T.4    Liu, C.5    Guo, A.Y.6
  • 55
    • 79961150206 scopus 로고    scopus 로고
    • Tooth evolution and dental defects: from genetic regulation network to micro-RNA fine-tuning
    • Michon F: Tooth evolution and dental defects: from genetic regulation network to micro-RNA fine-tuning. Birth Defects Res A Clin Mol Teratol 2011,91(8):763-769. 10.1002/bdra.20787.
    • (2011) Birth Defects Res A Clin Mol Teratol , vol.91 , Issue.8 , pp. 763-769
    • Michon, F.1
  • 56
    • 34547555796 scopus 로고    scopus 로고
    • Global and local architecture of the mammalian microRNA-transcription factor regulatory network
    • Shalgi R, Lieber D, Oren M, Pilpel Y: Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comput Biol 2007,3(7):e131. 10.1371/journal.pcbi.0030131.
    • (2007) PLoS Comput Biol , vol.3 , Issue.7 , pp. e131
    • Shalgi, R.1    Lieber, D.2    Oren, M.3    Pilpel, Y.4
  • 57
    • 34249819336 scopus 로고    scopus 로고
    • MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals
    • Tsang J, Zhu J, van Oudenaarden A: MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. Mol Cell 2007,26(5):753-767. 10.1016/j.molcel.2007.05.018.
    • (2007) Mol Cell , vol.26 , Issue.5 , pp. 753-767
    • Tsang, J.1    Zhu, J.2    van Oudenaarden, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.