Determination of protein regions responsible for interactions of amelogenin with CD63 and LAMP1

Biochemical Journal

Volumn 408, Issue 3, 2007, Pages 347-354

  Zou, YanMing ^a   Wang, HongJun ^a   Shapiro, Jason L ^a   Okamoto, Curtis T ^b   Brookes, Steven J ^c   Lyngstadaas, S Petter ^d   Snead, Malcolm L ^a   Paine, Michael L ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^b UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^c UNIVERSITY OF LEEDS   (United Kingdom)

^d UNIVERSITY OF OSLO   (Norway)

Author keywords

Amelogenin; CD63; Enamel matrix; Lysosome associated membrane protein 1 (LAMP1); Protein protein interaction; Yeast two hybrid assay

Indexed keywords

BIOASSAY; CELLS; HYDROXYAPATITE; YEAST;

AMELOBLASTS; AMELOGENIN; ENAMEL MATRIX; ENDOCYTOSIS; LYSOSOME-ASSOCIATED MEMBRANE PROTEINS; PROTEIN-PROTEIN INTERACTION; TRANSMEMBRANE PROTEINS; YEAST TWO HYBRID ASSAY;

PROTEINS;

AMELOBLASTIN; AMELOGENIN; AMINO ACID; CD63 ANTIGEN; ENAMEL PROTEIN; LYSOSOME ASSOCIATED MEMBRANE PROTEIN 1;

ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

AMELOGENIN; AMINO ACID SEQUENCE; ANIMALS; ANTIGENS, CD; BASE SEQUENCE; BINDING SITES; DNA PRIMERS; LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEINS; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PLATELET MEMBRANE GLYCOPROTEINS; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID; TWO-HYBRID SYSTEM TECHNIQUES;

BASIDIOMYCOTA;

EID: 37549021878     PISSN: 02646021     EISSN: None     Source Type: Journal    
DOI: 10.1042/BJ20070881     Document Type: Article

References (53)

1. Snead, M. L., Zeichner-David, M., Chandra, T., Robson, K. J. H., Woo, S. L. C. and Slavkin, H. C. (1983) Construction and identification of mouse amelogenin cDNA clones. Proc. Natl. Acad. Sci. U.S.A. 80, 7254-7258
2. Fong, C. D., Slaby, I. and Hammarstrom, L. (1996) Amelin: an enamel-related protein, transcribed in the cells of epithelial root sheath. J. Bone Miner. Res. 11, 892-898
3. Hu, C. C., Fukae, M., Uchida, T., Qian, Q., Zhang, C. H., Ryu, O. H., Tanabe, T., Yamakoshi, Y., Murakami, C., Dohi, N. et al. (1997) Cloning and characterization of porcine enamelin mRNAs. J. Dent. Res. 76, 1720-1729
4. Iwasaki, K., Bajenova, E., Somogyi-Ganss, E., Miller, M., Nguyen, V., Nourkeyhani, H., Gao, Y., Wendel, M. and Ganss, B. (2005) Amelotin: a novel secreted, ameloblast-specific protein. J. Dent. Res. 84, 1127-1132
5. Begue-Kirn, C., Krebsbach, P. H., Bartlett, J. D. and Butler, W. T. (1998) Dentin sialoprotein, dentin phosphoprotein, enamelysin and ameloblastic tooth-specific molecules that are distinctively expressed during murine dental differentiation. Eur.J. Oral Sci. 106, 963-970
6. Nanci, A., Zalzal, S., Lavoie, P., Kunikata, M., Chen, W. Y., Krebsbach, P. H., Yamada, Y., Hammarstrom, L., Simmer, J. P., Fincham, A. G. et al. (1998) Comparative immunochemical analyses of the developmental expression and distribution of ameloblastin and amelogenin in rat incisors. J. Histochem. Cytochem. 46, 911-934
7. Simmer, J. P., Fukae, M., Tanabe, T., Yamakoshi, Y., Uchida, T., Xue, J., Margolis, H. C., Shimizu, M., DeHart, B. C., Hu, C. C. and Bartlett, J. D. (1998) Purification, characterization, and cloning of enamel matrix serine proteinase 1. J. Dent. Res. 77, 377-386
8. Bartlett, J. D., Simmer, J. P., Xue, J., Margolis, H. C. and Moreno, E. C. (1996) Molecular cloning and mRNA tissue distribution of a novel matrix metalloproteinase isolated from porcine enamel organ. Gene 183, 123-128
9. Gibson, C. W., Yuan, Z. A., Hall, B., Longenecker, G., Chen, E. H., Thyagarajan, T., Sreenath, T., Wright, J. T., Decker, S., Piddington, R. et al. (2001) Amelogenin-deficient mice display an amelogenesis imperfecta phenotype. J. Biol. Chem. 276, 31871-31875
10. Margolis, H. C., Beniash, E. and Fowler, C. E. (2006) Role of macromolecular assembly of enamel matrix proteins in enamel formation. J. Dent. Res. 85, 775-793
11. Wang, H. J., Tannukit, S., Zhu, D. H., Snead, M. L. and Paine, M. L. (2005) Enamel matrix protein interactions. J. Bone Miner. Res. 20, 1032-1040
12. Stipp, C. S., Kolesnikova, T. V. and Hemler, M. E. (2003) Functional domains in tetraspanin proteins. Trends Biochem. Sci. 28, 106-112
13. Yunta, M. and Lazo, P. A. (2003) Tetraspanin proteins as organisers of membrane microdomains and signalling complexes. Cell. Signalling 15, 559-564
14. Berditchevski, F. (2001) Complexes of tetraspanins with integrins: more than meets the eye. J. Cell Sci. 114, 4143-4151
15. Duffield, A., Kamsteeg, E. J., Brown, A. N., Pagel, P. and Caplan, M. J. (2003) The tetraspanin CD63 enhances the internalization of the H,K-ATPase β-subunit. Proc. Natl. Acad. Sci. U.S.A. 100, 15560-15565
16. Tompkins, K., George, A. and Veis, A. (2006) Characterization of a mouse amelogenin [A-4]/M59 cell surface receptor. Bone 38, 172-180
17. Cook, N. R., Row, P. E. and Davidson, H. W. (2004) Lysosome associated membrane protein 1 (Lamp1) traffics directly from the TGN to early endosomes. Traffic 5, 685-699
18. Kannan, K., Stewart, R. M., Bounds, W., Carlsson, S. R., Fukuda, M., Betzing, K. W. and Holcombe, R. F. (1996) Lysosome-associated membrane proteins h-LAMP1 (CD107a) and h-LAMP2 (CD107b) are activation-dependent cell surface glycoproteins in human peripheral blood mononuclear cells which mediate cell adhesion to vascular endothelium. Cell. Immunol. 171, 10-19
19. Shapiro, J. L., Wen, X., Okamoto, C. T., Wang, H. J., Lyngstadaas, S. P., Goldberg, M., Snead, M. L. and Paine, M. L. (2007) Cellular uptake of amelogenin, and its localization to CD63, and Lamp1-positive vesicles. Cell. Mol. Life Sci. 64, 244-256
20. Sambrook, J. and Russell, D. W. (2001) Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, New York
21. Paine, M. L., Krebsbach, P. H., Chen, L. S., Paine, C. T., Yamada, Y., Deutsch, D. and Snead, M. L. (1998) Protein-to-protein interactions: criteria defining the assembly of the enamel organic matrix. J. Dent. Res. 77, 496-502
22. Adamczak, R., Porollo, A. and Meller, J. (2005) Combining prediction of secondary structure and solvent accessibility in proteins. Proteins 59, 467-475
23. Koh, I. Y. Y., Eyrich, V. A., Marti-Renom, M. A., Przybylski, D., Madhusudhan, M. S., Eswar, N., Grana, O., Pazos, F., Valencia, A., Sali, A. and Rost, B. (2003) EVA: evaluation of protein structure prediction servers. Nucleic Acids Res. 31, 3311-3315
24. Dosztanyi, Z., Csizmok, V., Tompa, P. and Simon, I. (2005) The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J. Mol. Biol. 347, 827-839
25. Jin, Y. M. and Dunbrack, Jr, R. L. (2005) Assessment of disorder prediclions in CASP6. Proteins 61, 167-175
26. Kelley, L. A., MacCallum, R. M. and Sternberg, M. J. E. (2000) Enhanced genome annotation using structural profiles in the program 3D-PSSM. J. Mol. Biol. 299, 499-520
27. Simmer, J. P., Hu, C. C., Lau, E. C., Sarte, P., Slavkin, H. C. and Fincham, A. G. (1994) Alternative splicing of the mouse amelogenin primary RNA transcript. Calcif. Tissue Int. 55, 302-310
28. Paine, M. L., Wang, H. J. and Snead, M. L. (2003) Amelogenin self-assembly and the role of the proline located within the carboxyl-teleopeptide. Connect. Tissue Res. 44, 52-57
29. Andrejewski, N., Punnonen, E. L., Guhde, G., Tanaka, Y., Lullmann-Rauch, R., Hartmann, D., von Figura, K. and Saftig, P. (1999) Normal lysosomal morphology and function in LAMP1-deficient mice. J. Biol. Chem. 274, 12692-12701
30. Eskelinen, E. L., Schmidt, C. K., Neu, S., Willenborg, M., Fuertes, G., Salvador, N., Tanaka, Y., Lullmann-Rauch, R., Hartmann, D., Heeren, J. et al. (2004) Disturbed cholesterol traffic but normal proteolytic function in LAMP-1/LAMP-2 double-deficient fibroblasts. Mol. Biol. Cell 15, 3132-3145
31. Paine, M. L. and Snead, M. L. (1997) Protein interactions during assembly of the enamel organic extracellular matrix. J. Bone Miner. Res. 12, 221-227
32. Kitadokoro, K., Bordo, D., Galli, G., Petracca, R., Falugi, F., Abrignani, S., Grandi, G. and Bolognesi, M. (2001) CD81 extracellular domain 3D structure: insight into the tetraspanin superfamily structural motifs. EMBO J. 20, 12-18
33. Kitadokoro, K., Ponassi, M., Galli, G., Petracca, R., Falugi, F., Grandi, G. and Bolognesi, M. (2002) Subunit association and conformational flexibility in the head subdomain of human CD81 large extracellular loop. Biol. Chem. 383, 1447-1452
34. Pautard, F. G. (1961) An X-ray diffraction pattern from human enamel matrix. Arch. Oral Biol. 3, 217-220
35. Angmar-Mansson, B. (1971) A polarization microscopic and micro X-ray diffraction study on organic matrix of developing human enamel. Arch. Oral Biol. 16, 147-156
36. Jodaikin, A., Weiner, S., Perltreves, D., Traub. W. and Termine, J. D. (1987) Developing enamel matrix proteins: a conformation study of enamelins and amelogenins. Int. J. Biol. Macromol. 9, 166-168
37. Aichmayer, B., Margolis, H. C., Sigel, R., Yamakoshi, Y., Simmer, J. P. and Fratzl, P. (2005) The onset of amelogenin nanosphere aggregation studied by small-angle X-ray scattering and dynamic light scattering. J. Struct. Biol. 151, 239-249
38. Du, C., Falini, G., Fermani, S., Abbott, C. and Moradian-Oldak, J. (2005) Supramolecular assembly of amelogenin nanospheres into birefringent microribbons. Science 307, 1450-1454
39. Shaw, W. J., Campbell, A. A., Paine, M. L. and Snead, M. L. (2004) The COOH terminus of the amelogenin, LRAP, is oriented next to the hydroxyapatite surface. J. Biol. Chem. 279, 40263-40266
40. Goto, Y., Kogure, E., Takagi, T., Aimoto, S. and Aoba, T. (1993) Molecular conformation of porcine amelogenin in solution: 3 folding units at the N-terminal, central, and C-terminal regions. J. Biochem. (Tokyo) 113, 55-60
41. Zheng, S. D., Tu, A. T., Renugopalakrishnan, V., Strawich, E. and Glimcher, M. J. (1987) A mixed β-turn and β-sheet structure for bovine tooth enamel amelogenin: Raman-spectroscopic evidence. Biopolymers 26, 1809-1813
42. Dyson, H. J. and Wright, P. E. (2005) Intrinsically unstructured proteins and their functions. Nat. Rev. Mol. Cell Biol. 6, 197-208
43. 1H magnetic double-resonance study of fetal enamel matrix proteins. Biopolymers 19, 741-750
44. Ward, J. J., Sodhi, J. S., McGuffin, L. J., Buxton, B. F. and Jones, D. T. (2004) Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. J. Mol. Biol. 337, 635-645
45. Fink, A. L. (2005) Natively unfolded proteins. Curr. Opin. Struct. Biol. 15, 35-41
46. Moradian-Oldak, J., Simmer, J. P., Lau, E. C., Sarte, P. E., Slavkin, H. C. and Fincham, A. G. (1994) Detection of monodisperse aggregates of a recombinant amelogenin by dynamic light-scattering. Biopolymers 34, 1339-1347
47. Robinson, C., Fuchs, P. and Weatherell, J. A. (1981) The appearance of developing rat incisor enamel using a freeze fracturing technigue. J. Cryst. Growth 53, 160-165
48. Snead, M. L. (2003) Amelogenin protein exhibits a modular design: implications for form and function. Connect. Tissue Res. 44, 47-51
49. Bartlett, J. D. and Simmer, J. P. (1999) Proteinases in developing dental enamel. Crit. Rev. Oral Biol. Med. 10, 425-441
50. Seigneuret, M., Delaguillaumie, A., Lagaudriere-Gesbert, C. and Conjeaud, H. (2001) Structure of the tetraspanin main extracellular domain: a partially conserved fold with a structurally variable domain insertion. J. Biol. Chem. 276, 40055-40064
51. Bienstock, R. J. and Barrett, J. C. (2001) KAI1, a prostate metastasis suppressor: prediction of solvated structure and interactions with binding partners: integrins, cadherins, and cell-surface receptor proteins. Mol. Carcinog. 32, 139-153
52. Levy, S. and Shoham, T. (2005) The tetraspanin web modulates immune-signalling complexes. Nat. Rev. Immunol. 5, 136-148
53. Rous, B. A., Reaves, B. J., Ihrke, G., Briggs, J. A. G., Gray, S. R., Stephens, D. J., Banting, G. and Luzio, J. P. (2002) Role of adaptor complex AP-3 in targeting wild-type and mutated CD63 to lysosomes. Mol. Biol. Cell 13, 1071-1082