메뉴 건너뛰기




Volumn 5, Issue 1, 2015, Pages 521-537

The adaptive immune system of Haloferax volcanii

Author keywords

Archaea; Cas6; Cascade; CRISPR cas; CrRNA; Haloferax volcanii; PAM; Type I B

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); HALOFERAX; HALOFERAX VOLCANII; PROKARYOTA;

EID: 84924286128     PISSN: None     EISSN: 20751729     Source Type: Journal    
DOI: 10.3390/life5010521     Document Type: Review
Times cited : (24)

References (52)
  • 2
    • 77957935381 scopus 로고    scopus 로고
    • CRISPR/Cas system and its role in phage-bacteria interactions
    • Deveau, H.; Garneau, J.E.; Moineau, S. CRISPR/Cas system and its role in phage-bacteria interactions. Annu. Rev. Microbiol. 2010, 64, 475-493.
    • (2010) Annu. Rev. Microbiol. , vol.64 , pp. 475-493
    • Deveau, H.1    Garneau, J.E.2    Moineau, S.3
  • 3
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Horvath, P.; Barrangou, R. CRISPR/Cas, the immune system of bacteria and archaea. Science 2010, 327, 167-170.
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 4
    • 79959319829 scopus 로고    scopus 로고
    • CRISPR-based adaptive immune systems
    • Terns, M.P.; Terns, R.M. CRISPR-based adaptive immune systems. Curr. Opin. Microbiol. 2011, 14, 321-327.
    • (2011) Curr. Opin. Microbiol. , vol.14 , pp. 321-327
    • Terns, M.P.1    Terns, R.M.2
  • 7
    • 84899134190 scopus 로고    scopus 로고
    • CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity
    • Barrangou, R.; Marraffini, L.A. CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity. Mol. Cell 2014, 54, 234-244.
    • (2014) Mol. Cell , vol.54 , pp. 234-244
    • Barrangou, R.1    Marraffini, L.A.2
  • 8
    • 84878936806 scopus 로고    scopus 로고
    • CRISPR-mediated adaptive immune systems in bacteria and archaea
    • Sorek, R.; Lawrence, C.M.; Wiedenheft, B. CRISPR-mediated adaptive immune systems in bacteria and archaea. Annu. Rev. Biochem. 2013, 82, 237-266.
    • (2013) Annu. Rev. Biochem. , vol.82 , pp. 237-266
    • Sorek, R.1    Lawrence, C.M.2    Wiedenheft, B.3
  • 10
    • 0029166294 scopus 로고
    • Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning
    • Mojica, F.J.; Ferrer, C.; Juez, G.; Rodriguez-Valera, F. Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning. Mol. Microbiol. 1995, 17, 85-93.
    • (1995) Mol. Microbiol. , vol.17 , pp. 85-93
    • Mojica, F.J.1    Ferrer, C.2    Juez, G.3    Rodriguez-Valera, F.4
  • 11
    • 0034034401 scopus 로고    scopus 로고
    • Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria
    • Mojica, F.J.; Diez-Villasenor, C.; Soria, E.; Juez, G. Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria. Mol. Microbiol. 2000, 36, 244-246.
    • (2000) Mol. Microbiol. , vol.36 , pp. 244-246
    • Mojica, F.J.1    Diez-Villasenor, C.2    Soria, E.3    Juez, G.4
  • 12
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica, F.J.; Diez-Villasenor, C.; Garcia-Martinez, J.; Almendros, C. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 2009, 155, 733-740.
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Almendros, C.4
  • 13
    • 84879026965 scopus 로고    scopus 로고
    • Protospacer recognition motifs: Mixed identities and functional diversity
    • Shah, S.A.; Erdmann, S.; Mojica, F.J.; Garrett, R.A. Protospacer recognition motifs: Mixed identities and functional diversity. RNA Biol. 2013, 10, 891-899.
    • (2013) RNA Biol. , vol.10 , pp. 891-899
    • Shah, S.A.1    Erdmann, S.2    Mojica, F.J.3    Garrett, R.A.4
  • 15
    • 84887971081 scopus 로고    scopus 로고
    • The basic building blocks and evolution of CRISPR-Cas systems
    • Makarova, K.S.; Wolf, Y.I.; Koonin, E.V. The basic building blocks and evolution of CRISPR-Cas systems. Biochem. Soc. Trans. 2013, 41, 1392-1400.
    • (2013) Biochem. Soc. Trans. , vol.41 , pp. 1392-1400
    • Makarova, K.S.1    Wolf, Y.I.2    Koonin, E.V.3
  • 16
    • 84896900602 scopus 로고    scopus 로고
    • CRISPR adaptive immune systems of Archaea
    • Vestergaard, G.; Garrett, R.A.; Shah, S.A. CRISPR adaptive immune systems of Archaea. RNA Biol. 2014, 11, 156-167.
    • (2014) RNA Biol. , vol.11 , pp. 156-167
    • Vestergaard, G.1    Garrett, R.A.2    Shah, S.A.3
  • 18
    • 34250398425 scopus 로고
    • Halobacterium volcanii spec. nov., a Dead Sea halobacterium with a moderate salt requirement
    • Mullakhanbhai, M.F.; Larsen, H. Halobacterium volcanii spec. nov., a Dead Sea halobacterium with a moderate salt requirement. Arch. Microbiol. 1975, 104, 207-214.
    • (1975) Arch. Microbiol. , vol.104 , pp. 207-214
    • Mullakhanbhai, M.F.1    Larsen, H.2
  • 19
    • 0022003836 scopus 로고
    • Genetic transfer in Halobacterium volcanii
    • Mevarech, M.; Werczberger, R. Genetic transfer in Halobacterium volcanii. J. Bacteriol. 1985, 162, 461-462.
    • (1985) J. Bacteriol. , vol.162 , pp. 461-462
    • Mevarech, M.1    Werczberger, R.2
  • 23
    • 77349095253 scopus 로고    scopus 로고
    • Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria
    • Krupovic, M.; Forterre, P.; Bamford, D.H. Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. J. Mol. Biol. 2010, 397, 144-160.
    • (2010) J. Mol. Biol. , vol.397 , pp. 144-160
    • Krupovic, M.1    Forterre, P.2    Bamford, D.H.3
  • 24
    • 84879584456 scopus 로고    scopus 로고
    • CRISPR interference: A structural perspective
    • Reeks, J.; Naismith, J.H.; White, M.F. CRISPR interference: A structural perspective. Biochem. J. 2013, 453, 155-166.
    • (2013) Biochem. J. , vol.453 , pp. 155-166
    • Reeks, J.1    Naismith, J.H.2    White, M.F.3
  • 25
    • 84948070568 scopus 로고    scopus 로고
    • crRNA biogenesis
    • Barrangou, R., van der Oost, J., Eds.; Springer: Berlin/Heidelberg, Germany
    • Charpentier, E.; van der Oost, J.; White, M.F. crRNA biogenesis. In CRISPR-Cas Systems; Barrangou, R., van der Oost, J., Eds.; Springer: Berlin/Heidelberg, Germany, 2013; pp. 115-144.
    • (2013) CRISPR-Cas Systems , pp. 115-144
    • Charpentier, E.1    van der Oost, J.2    White, M.F.3
  • 27
    • 84907204893 scopus 로고    scopus 로고
    • Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target
    • Mulepati, S.; Heroux, A.; Bailey, S. Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target. Science 2014, 345, 1479-1484.
    • (2014) Science , vol.345 , pp. 1479-1484
    • Mulepati, S.1    Heroux, A.2    Bailey, S.3
  • 28
    • 84908445494 scopus 로고    scopus 로고
    • Crystal structure of the RNA-guided immune surveillance cascade complex in Escherichia coli
    • Zhao, H.; Sheng, G.; Wang, J.; Wang, M.; Bunkoczi, G.; Gong, W.; Wei, Z.; Wang, Y. Crystal structure of the RNA-guided immune surveillance cascade complex in Escherichia coli. Nature 2014, 515, 147-150.
    • (2014) Nature , vol.515 , pp. 147-150
    • Zhao, H.1    Sheng, G.2    Wang, J.3    Wang, M.4    Bunkoczi, G.5    Gong, W.6    Wei, Z.7    Wang, Y.8
  • 30
    • 84865704094 scopus 로고    scopus 로고
    • Cas5d protein processes pre-CRRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system
    • Nam, K.H.; Haitjema, C.; Liu, X.; Ding, F.; Wang, H.; DeLisa, M.P.; Ke, A. Cas5d protein processes pre-CRRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system. Structure 2012, 20, 1574-1584.
    • (2012) Structure , vol.20 , pp. 1574-1584
    • Nam, K.H.1    Haitjema, C.2    Liu, X.3    Ding, F.4    Wang, H.5    DeLisa, M.P.6    Ke, A.7
  • 31
    • 35748974534 scopus 로고    scopus 로고
    • Evolutionary conservation of sequence and secondary structures in CRISPR repeats
    • Kunin, V.; Sorek, R.; Hugenholtz, P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol. 2007, 8, doi:10.1186/gb-2007-8-4-r61.
    • (2007) Genome Biol. , vol.8
    • Kunin, V.1    Sorek, R.2    Hugenholtz, P.3
  • 32
    • 84863116866 scopus 로고    scopus 로고
    • The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex
    • Wang, R.; Zheng, H.; Preamplume, G.; Shao, Y.; Li, H. The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex. Protein Sci. 2012, 21, 405-417.
    • (2012) Protein Sci. , vol.21 , pp. 405-417
    • Wang, R.1    Zheng, H.2    Preamplume, G.3    Shao, Y.4    Li, H.5
  • 33
    • 84920939515 scopus 로고    scopus 로고
    • Structural principles of CRISPR RNA processing
    • Li, H. Structural principles of CRISPR RNA processing. Structure 2015, 23, 13-20.
    • (2015) Structure , vol.23 , pp. 13-20
    • Li, H.1
  • 34
    • 84896773662 scopus 로고    scopus 로고
    • A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (CRISPR)-derived RNAs (crRNAs) in Haloferax volcanii
    • Brendel, J.; Stoll, B.; Lange, S.J.; Sharma, K.; Lenz, C.; Stachler, A.E.; Maier, L.K.; Richter, H.; Nickel, L.; Schmitz, R.A.; et al. A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (CRISPR)-derived RNAs (crRNAs) in Haloferax volcanii. J. Biol. Chem. 2014, 289, 7164-7177.
    • (2014) J. Biol. Chem. , vol.289 , pp. 7164-7177
    • Brendel, J.1    Stoll, B.2    Lange, S.J.3    Sharma, K.4    Lenz, C.5    Stachler, A.E.6    Maier, L.K.7    Richter, H.8    Nickel, L.9    Schmitz, R.A.10
  • 35
    • 84868111481 scopus 로고    scopus 로고
    • Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
    • Richter, H.; Zoephel, J.; Schermuly, J.; Maticzka, D.; Backofen, R.; Randau, L. Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis. Nucleic Acids Res. 2012, 40, 9887-9896.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 9887-9896
    • Richter, H.1    Zoephel, J.2    Schermuly, J.3    Maticzka, D.4    Backofen, R.5    Randau, L.6
  • 37
    • 84922767032 scopus 로고    scopus 로고
    • An active immune defence with a minimal CRISPR (clustered regularly interspaced short palindromic repeats) RNA and without the Cas6 protein
    • Maier, L.K.; Stachler, A.E.; Saunders, S.J.; Backofen, R.; Marchfelder, A. An active immune defence with a minimal CRISPR (clustered regularly interspaced short palindromic repeats) RNA and without the Cas6 protein. J. Biol. Chem. 2014, 15, doi:10.1074/jbc.M114.617506.
    • (2014) J. Biol. Chem. , vol.15
    • Maier, L.K.1    Stachler, A.E.2    Saunders, S.J.3    Backofen, R.4    Marchfelder, A.5
  • 38
    • 84879023629 scopus 로고    scopus 로고
    • Two CRISPR-Cas systems in Methanosarcina mazei strain Gö1 display common processing features despite belonging to different types I and III
    • Nickel, L.; Weidenbach, K.; Jäger, D.; Backofen, R.; Lange, S.J.; Heidrich, N.; Schmitz, R.A. Two CRISPR-Cas systems in Methanosarcina mazei strain Gö1 display common processing features despite belonging to different types I and III. RNA Biol. 2013, 10, 779-791.
    • (2013) RNA Biol. , vol.10 , pp. 779-791
    • Nickel, L.1    Weidenbach, K.2    Jäger, D.3    Backofen, R.4    Lange, S.J.5    Heidrich, N.6    Schmitz, R.A.7
  • 39
    • 84874172103 scopus 로고    scopus 로고
    • CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein
    • Scholz, I.; Lange, S.J.; Hein, S.; Hess, W.R.; Backofen, R. CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein. PloS One 2013, 8, doi: 10.1371/journal.pone.0056470.
    • (2013) PloS One , vol.8
    • Scholz, I.1    Lange, S.J.2    Hein, S.3    Hess, W.R.4    Backofen, R.5
  • 41
    • 84859294085 scopus 로고    scopus 로고
    • Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus
    • Deng, L.; Kenchappa, C.S.; Peng, X.; She, Q.; Garrett, R.A. Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus. Nucleic Acids Res. 2012, 40, 2470-2480.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 2470-2480
    • Deng, L.1    Kenchappa, C.S.2    Peng, X.3    She, Q.4    Garrett, R.A.5
  • 43
    • 68249122061 scopus 로고    scopus 로고
    • Mre11-Rad50 promotes rapid repair of DNA damage in the polyploid archaeon Haloferax volcanii by restraining homologous recombination
    • Delmas, S.; Shunburne, L.; Ngo, H.P.; Allers, T. Mre11-Rad50 promotes rapid repair of DNA damage in the polyploid archaeon Haloferax volcanii by restraining homologous recombination. PloS Genet. 2009, 5, doi:10.1371/journal.pgen.1000552.
    • (2009) PloS Genet. , vol.5
    • Delmas, S.1    Shunburne, L.2    Ngo, H.P.3    Allers, T.4
  • 44
    • 34249714815 scopus 로고    scopus 로고
    • Genetic and physical mapping of DNA replication origins in Haloferax volcanii
    • Norais, C.; Hawkins, M.; Hartman, A.L.; Eisen, J.A.; Myllykallio, H.; Allers, T. Genetic and physical mapping of DNA replication origins in Haloferax volcanii. PloS Genet. 2007, 3, doi: 10.1371/journal.pgen.0030077.
    • (2007) PloS Genet. , vol.3
    • Norais, C.1    Hawkins, M.2    Hartman, A.L.3    Eisen, J.A.4    Myllykallio, H.5    Allers, T.6
  • 45
    • 0031034269 scopus 로고    scopus 로고
    • Construction and analysis of a recombination-deficient (radA) mutant of Haloferax volcanii
    • Woods, W.G.; Dyall-Smith, M.L. Construction and analysis of a recombination-deficient (radA) mutant of Haloferax volcanii. Mol. Microbiol. 1997, 23, 791-797.
    • (1997) Mol. Microbiol. , vol.23 , pp. 791-797
    • Woods, W.G.1    Dyall-Smith, M.L.2
  • 46
    • 0023517503 scopus 로고
    • Characterization of pHV2 from Halobacterium volcanii and its use in demonstrating transformation of an archaebacterium
    • Charlebois, R.L.; Lam, W.L.; Cline, S.W.; Doolittle, W.F. Characterization of pHV2 from Halobacterium volcanii and its use in demonstrating transformation of an archaebacterium. Proc. Natl. Acad. Sci. USA 1987, 84, 8530-8534.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 8530-8534
    • Charlebois, R.L.1    Lam, W.L.2    Cline, S.W.3    Doolittle, W.F.4
  • 47
    • 84893693085 scopus 로고    scopus 로고
    • Planting the seed: Target recognition of short guide RNas
    • Künne, T.; Swarts, D.C.; Brouns, S.J. Planting the seed: Target recognition of short guide RNas. Trends Microbiol. 2014, 22, 74-83.
    • (2014) Trends Microbiol. , vol.22 , pp. 74-83
    • Künne, T.1    Swarts, D.C.2    Brouns, S.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.