-
1
-
-
77956213914
-
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
-
PMID:20559554
-
Touchon M, Rocha EP. The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella. PLoS One 2010; 5:e11126; PMID:20559554; http://dx.doi.org/10.1371/journal.pone.0011126.
-
(2010)
PLoS One
, vol.5
-
-
Touchon, M.1
Rocha, E.P.2
-
2
-
-
74249095519
-
CRISPR/Cas, the immune system of bacteria and archaea
-
PMID:20056882
-
Horvath P, Barrangou R. CRISPR/Cas, the immune system of bacteria and archaea. Science 2010; 327:167-70; PMID:20056882; http://dx.doi.org/10.1126/ science.1179555.
-
(2010)
Science
, vol.327
, pp. 167-170
-
-
Horvath, P.1
Barrangou, R.2
-
3
-
-
73649130281
-
The CRISPR system: Small RNA-guided defense in bacteria and archaea
-
PMID:20129051
-
Karginov FV, Hannon GJ. The CRISPR system: small RNA-guided defense in bacteria and archaea. Mol Cell 2010; 37:7-19; PMID:20129051; http://dx.doi.org/10.1016/j.molcel.2009.12.033.
-
(2010)
Mol Cell
, vol.37
, pp. 7-19
-
-
Karginov, F.V.1
Hannon, G.J.2
-
4
-
-
77249170201
-
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
-
PMID:20125085
-
Marraffini LA, Sontheimer EJ. CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat Rev Genet 2010; 11:181-90; PMID:20125085; http://dx.doi.org/10.1038/nrg2749.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 181-190
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
5
-
-
79955435335
-
Clustered regularly interspaced short palindromic repeats (CRISPRs): The hallmark of an ingenious antiviral defense mechanism in prokaryotes
-
PMID:21294681
-
Al-Attar S, Westra ER, van der Oost J, Brouns SJ. Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes. Biol Chem 2011; 392:277-89; PMID:21294681; http://dx.doi.org/10.1515/bc.2011.042.
-
(2011)
Biol Chem
, vol.392
, pp. 277-289
-
-
Al-Attar, S.1
Westra, E.R.2
Van Der Oost, J.3
Brouns, S.J.4
-
6
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
PMID:21552286
-
Makarova KS, Haft DH, Barrangou R, Brouns SJJ, Charpentier E, Horvath P, et al. Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol 2011; 9:467-77; PMID:21552286; http://dx.doi.org/10.1038/nrmicro2577.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.J.4
Charpentier, E.5
Horvath, P.6
-
7
-
-
84870180587
-
The CRISPRs, they are a-changin': How prokaryotes generate adaptive immunity
-
PMID:23145983
-
Westra ER, Swarts DC, Staals RH, Jore MM, Brouns SJ, van der Oost J. The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. Annu Rev Genet 2012; 46:311-39; PMID:23145983; http://dx.doi.org/10.1146/annurev- genet-110711-155447.
-
(2012)
Annu Rev Genet
, vol.46
, pp. 311-339
-
-
Westra, E.R.1
Swarts, D.C.2
Staals, R.H.3
Jore, M.M.4
Brouns, S.J.5
Van Der Oost, J.6
-
8
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
PMID:22337052
-
Wiedenheft B, Sternberg SH, Doudna JA. RNA-guided genetic silencing systems in bacteria and archaea. Nature 2012; 482:331-8; PMID:22337052; http://dx.doi.org/10.1038/nature10886.
-
(2012)
Nature
, vol.482
, pp. 331-338
-
-
Wiedenheft, B.1
Sternberg, S.H.2
Doudna, J.A.3
-
9
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
PMID:15758212
-
Pourcel C, Salvignol G, Vergnaud G. CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 2005; 151:653-63; PMID:15758212; http://dx.doi.org/10.1099/mic.0.27437-0.
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
10
-
-
33748096466
-
A putative viral defence mechanism in archaeal cells
-
PMID:16877322
-
Lillestøl RK, Redder P, Garrett RA, Brügger K. A putative viral defence mechanism in archaeal cells. Archaea 2006; 2:59-72; PMID:16877322; http://dx.doi.org/10.1155/2006/542818.
-
(2006)
Archaea
, vol.2
, pp. 59-72
-
-
Lillestøl, R.K.1
Redder, P.2
Garrett, R.A.3
Brügger, K.4
-
11
-
-
39149142575
-
CRISPR - A widespread system that provides acquired resistance against phages in bacteria and archaea
-
PMID:18157154
-
Sorek R, Kunin V, Hugenholtz P. CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol 2008; 6:181-6; PMID:18157154; http://dx.doi.org/10.1038/nrmicro1793.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 181-186
-
-
Sorek, R.1
Kunin, V.2
Hugenholtz, P.3
-
12
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
PMID:16545108
-
Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol Direct 2006; 1:7; PMID:16545108; http://dx.doi.org/10.1186/1745-6150-1-7.
-
(2006)
Biol Direct
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
13
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
PMID:17379808
-
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007; 315:1709-12; PMID:17379808; http://dx.doi.org/10.1126/science.1138140.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
-
14
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
PMID:16292354
-
Haft DH, Selengut J, Mongodin EF, Nelson KE. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 2005; 1:e60; PMID:16292354; http://dx.doi.org/10.1371/journal.pcbi.0010060.
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
15
-
-
79953238744
-
CRISPR-Cas: An adaptive immunity system in prokaryotes
-
PMID:20556198
-
Koonin EV, Makarova KS. CRISPR-Cas: an adaptive immunity system in prokaryotes. F1000 Biol Rep 2009; 1:95; PMID:20556198.
-
(2009)
F1000 Biol Rep
, vol.1
, pp. 95
-
-
Koonin, E.V.1
Makarova, K.S.2
-
16
-
-
84862657238
-
CRISPR: New horizons in phage resistance and strain identification
-
PMID:22224556
-
Barrangou R, Horvath P. CRISPR: new horizons in phage resistance and strain identification. Annu Rev Food Sci Technol 2012; 3:143-62; PMID:22224556; http://dx.doi.org/10.1146/annurev-food-022811-101134.
-
(2012)
Annu Rev Food Sci Technol
, vol.3
, pp. 143-162
-
-
Barrangou, R.1
Horvath, P.2
-
17
-
-
38949123143
-
Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
-
PMID:18065545
-
Deveau H, Barrangou R, Garneau JE, Labonté J, Fremaux C, Boyaval P, et al. Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J Bacteriol 2008; 190:1390-400; PMID:18065545; http://dx.doi.org/10.1128/JB.01412-07.
-
(2008)
J Bacteriol
, vol.190
, pp. 1390-1400
-
-
Deveau, H.1
Barrangou, R.2
Garneau, J.E.3
Labonté, J.4
Fremaux, C.5
Boyaval, P.6
-
18
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
PMID:18703739
-
Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 2008; 321:960-4; PMID:18703739; http://dx.doi.org/10.1126/science.1159689.
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
-
19
-
-
64049118040
-
Short motif sequences determine the targets of the prokaryotic CRISPR defence system
-
PMID:19246744
-
Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 2009; 155:733-40; PMID:19246744; http://dx.doi.org/10.1099/mic.0.023960-0.
-
(2009)
Microbiology
, vol.155
, pp. 733-740
-
-
Mojica, F.J.1
Díez-Villaseñor, C.2
García-Martínez, J.3
Almendros, C.4
-
20
-
-
84870718176
-
Memory of viral infections by CRISPR-Cas adaptive immune systems: Acquisition of new information
-
PMID:23123013
-
Fineran PC, Charpentier E. Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information. Virology 2012; 434:202-9; PMID:23123013; http://dx.doi.org/10.1016/j.virol.2012.10.003.
-
(2012)
Virology
, vol.434
, pp. 202-209
-
-
Fineran, P.C.1
Charpentier, E.2
-
21
-
-
62949197925
-
CRISPR families of the crenarchaeal genus Sulfolobus: Bidirectional transcription and dynamic properties
-
PMID:19239620
-
Lillestøl RK, Shah SA, Brügger K, Redder P, Phan H, Christiansen J, et al. CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol 2009; 72:259-72; PMID:19239620; http://dx.doi.org/10.1111/j.1365-2958.2009.06641.x.
-
(2009)
Mol Microbiol
, vol.72
, pp. 259-272
-
-
Lillestøl, R.K.1
Shah, S.A.2
Brügger, K.3
Redder, P.4
Phan, H.5
Christiansen, J.6
-
22
-
-
13144269598
-
Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus
-
PMID:15659164
-
Tang TH, Polacek N, Zywicki M, Huber H, Brugger K, Garrett R, et al. Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus. Mol Microbiol 2005; 55:469-81; PMID:15659164; http://dx.doi.org/10.1111/j.1365-2958.2004.04428.x.
-
(2005)
Mol Microbiol
, vol.55
, pp. 469-481
-
-
Tang, T.H.1
Polacek, N.2
Zywicki, M.3
Huber, H.4
Brugger, K.5
Garrett, R.6
-
23
-
-
57049149666
-
Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus
-
PMID:18971321
-
Hale C, Kleppe K, Terns RM, Terns MP. Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus. RNA 2008; 14:2572-9; PMID:18971321; http://dx.doi.org/10. 1261/rna.1246808.
-
(2008)
RNA
, vol.14
, pp. 2572-2579
-
-
Hale, C.1
Kleppe, K.2
Terns, R.M.3
Terns, M.P.4
-
24
-
-
77949398275
-
Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS
-
PMID:20132443
-
Pul U, Wurm R, Arslan Z, Geissen R, Hofmann N, Wagner R. Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol 2010; 75:1495-512; PMID:20132443; http://dx.doi.org/10.1111/ j.1365-2958.2010.07073.x.
-
(2010)
Mol Microbiol
, vol.75
, pp. 1495-1512
-
-
Pul, U.1
Wurm, R.2
Arslan, Z.3
Geissen, R.4
Hofmann, N.5
Wagner, R.6
-
25
-
-
58049191229
-
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
-
PMID:19141480
-
Carte J, Wang R, Li H, Terns RM, Terns MP. Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 2008; 22:3489-96; PMID:19141480; http://dx.doi.org/10.1101/gad.1742908.
-
(2008)
Genes Dev
, vol.22
, pp. 3489-3496
-
-
Carte, J.1
Wang, R.2
Li, H.3
Terns, R.M.4
Terns, M.P.5
-
26
-
-
77956498326
-
Sequence- and structure-specific RNA processing by a CRISPR endonuclease
-
PMID:20829488
-
Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA. Sequence- and structure-specific RNA processing by a CRISPR endonuclease. Science 2010; 329:1355-8; PMID:20829488; http://dx.doi.org/10.1126/science.1192272.
-
(2010)
Science
, vol.329
, pp. 1355-1358
-
-
Haurwitz, R.E.1
Jinek, M.2
Wiedenheft, B.3
Zhou, K.4
Doudna, J.A.5
-
27
-
-
78149355930
-
Binding and cleavage of CRISPR RNA by Cas6
-
PMID:20884784
-
Carte J, Pfister NT, Compton MM, Terns RM, Terns MP. Binding and cleavage of CRISPR RNA by Cas6. RNA 2010; 16:2181-8; PMID:20884784; http://dx.doi.org/ 10.1261/rna.2230110.
-
(2010)
RNA
, vol.16
, pp. 2181-2188
-
-
Carte, J.1
Pfister, N.T.2
Compton, M.M.3
Terns, R.M.4
Terns, M.P.5
-
28
-
-
79551694059
-
Interaction of the Cas6 riboendonuclease with CRISPR RNAs: Recognition and cleavage
-
PMID:21300293
-
Wang R, Preamplume G, Terns MP, Terns RM, Li H. Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure 2011; 19:257-64; PMID:21300293; http://dx.doi.org/10.1016/j.str.2010.11.014.
-
(2011)
Structure
, vol.19
, pp. 257-264
-
-
Wang, R.1
Preamplume, G.2
Terns, M.P.3
Terns, R.M.4
Li, H.5
-
29
-
-
79958825675
-
An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3
-
PMID:21572442
-
Sashital DG, Jinek M, Doudna JA. An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3. Nat Struct Mol Biol 2011; 18:680-7; PMID:21572442; http://dx.doi.org/10.1038/nsmb.2043.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 680-687
-
-
Sashital, D.G.1
Jinek, M.2
Doudna, J.A.3
-
30
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
PMID:19945378
-
Hale CR, Zhao P, Olson S, Duff MO, Graveley BR, Wells L, et al. RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 2009; 139:945-56; PMID:19945378; http://dx.doi.org/10.1016/j.cell.2009.07.040.
-
(2009)
Cell
, vol.139
, pp. 945-956
-
-
Hale, C.R.1
Zhao, P.2
Olson, S.3
Duff, M.O.4
Graveley, B.R.5
Wells, L.6
-
31
-
-
35748974534
-
Evolutionary conservation of sequence and secondary structures in CRISPR repeats
-
PMID:17442114
-
Kunin V, Sorek R, Hugenholtz P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 2007; 8:R61; PMID:17442114; http://dx.doi.org/10.1186/gb-2007-8-4-r61.
-
(2007)
Genome Biol
, vol.8
-
-
Kunin, V.1
Sorek, R.2
Hugenholtz, P.3
-
32
-
-
80052698473
-
Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein
-
PMID:21699496
-
Howard JA, Delmas S, Ivancic-Bace I, Bolt EL. Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein. Biochem J 2011; 439:85-95; PMID:21699496; http://dx.doi.org/10.1042/BJ20110901.
-
(2011)
Biochem J
, vol.439
, pp. 85-95
-
-
Howard, J.A.1
Delmas, S.2
Ivancic-Bace, I.3
Bolt, E.L.4
-
33
-
-
84861357119
-
Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax
-
PMID:22408157
-
Plagens A, Tjaden B, Hagemann A, Randau L, Hensel R. Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax. J Bacteriol 2012; 194:2491-500; PMID:22408157; http://dx.doi.org/10.1128/JB.00206-12.
-
(2012)
J Bacteriol
, vol.194
, pp. 2491-2500
-
-
Plagens, A.1
Tjaden, B.2
Hagemann, A.3
Randau, L.4
Hensel, R.5
-
34
-
-
80755145195
-
The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli
-
PMID:21813460
-
Sapranauskas R, Gasiunas G, Fremaux C, Barrangou R, Horvath P, Siksnys V. The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli. Nucleic Acids Res 2011; 39:9275-82; PMID:21813460; http://dx.doi.org/10.1093/nar/gkr606.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 9275-9282
-
-
Sapranauskas, R.1
Gasiunas, G.2
Fremaux, C.3
Barrangou, R.4
Horvath, P.5
Siksnys, V.6
-
35
-
-
84856778250
-
Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity
-
PMID:22227115
-
Zhang J, Rouillon C, Kerou M, Reeks J, Brugger K, Graham S, et al. Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity. Mol Cell 2012; 45:303-13; PMID:22227115; http://dx.doi.org/10.1016/j. molcel.2011.12.013.
-
(2012)
Mol Cell
, vol.45
, pp. 303-313
-
-
Zhang, J.1
Rouillon, C.2
Kerou, M.3
Reeks, J.4
Brugger, K.5
Graham, S.6
-
36
-
-
33744941078
-
The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
-
PMID:16612537
-
Godde JS, Bickerton A. The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol 2006; 62:718-29; PMID:16612537; http://dx.doi.org/10.1007/s00239-005-0223- z.
-
(2006)
J Mol Evol
, vol.62
, pp. 718-729
-
-
Godde, J.S.1
Bickerton, A.2
-
37
-
-
84866951828
-
An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA
-
PMID:22767603
-
Fischer S, Maier LK, Stoll B, Brendel J, Fischer E, Pfeiffer F, et al. An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA. J Biol Chem 2012; 287:33351-63; PMID:22767603; http://dx.doi.org/10.1074/jbc.M112.377002.
-
(2012)
J Biol Chem
, vol.287
, pp. 33351-33363
-
-
Fischer, S.1
Maier, L.K.2
Stoll, B.3
Brendel, J.4
Fischer, E.5
Pfeiffer, F.6
-
38
-
-
84868111481
-
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
-
PMID:22879377
-
Richter H, Zoephel J, Schermuly J, Maticzka D, Backofen R, Randau L. Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis. Nucleic Acids Res 2012; 40:9887-96; PMID:22879377; http://dx.doi.org/10.1093/nar/gks737.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 9887-9896
-
-
Richter, H.1
Zoephel, J.2
Schermuly, J.3
Maticzka, D.4
Backofen, R.5
Randau, L.6
-
39
-
-
84863116866
-
The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex
-
PMID:22238224
-
Wang R, Zheng H, Preamplume G, Shao Y, Li H. The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex. Protein Sci 2012; 21:405-17; PMID:22238224; http://dx.doi.org/10.1002/pro.2028.
-
(2012)
Protein Sci
, vol.21
, pp. 405-417
-
-
Wang, R.1
Zheng, H.2
Preamplume, G.3
Shao, Y.4
Li, H.5
-
40
-
-
79958848350
-
Recognition and maturation of effector RNAs in a CRISPR interference pathway
-
PMID:21572444
-
Gesner EM, Schellenberg MJ, Garside EL, George MM, Macmillan AM. Recognition and maturation of effector RNAs in a CRISPR interference pathway. Nat Struct Mol Biol 2011; 18:688-92; PMID:21572444; http://dx.doi.org/10.1038/ nsmb.2042.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 688-692
-
-
Gesner, E.M.1
Schellenberg, M.J.2
Garside, E.L.3
George, M.M.4
Macmillan, A.M.5
-
41
-
-
84862190458
-
Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA
-
PMID:22522703
-
Haurwitz RE, Sternberg SH, Doudna JA. Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA. EMBO J 2012; 31:2824-32; PMID:22522703; http://dx.doi.org/10.1038/emboj.2012.107.
-
(2012)
EMBO J
, vol.31
, pp. 2824-2832
-
-
Haurwitz, R.E.1
Sternberg, S.H.2
Doudna, J.A.3
-
42
-
-
81255160844
-
Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference
-
PMID:22009198
-
Beloglazova N, Petit P, Flick R, Brown G, Savchenko A, Yakunin AF. Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference. EMBO J 2011; 30:4616-27; PMID:22009198; http://dx.doi.org/10.1038/emboj.2011.377.
-
(2011)
EMBO J
, vol.30
, pp. 4616-4627
-
-
Beloglazova, N.1
Petit, P.2
Flick, R.3
Brown, G.4
Savchenko, A.5
Yakunin, A.F.6
-
44
-
-
0035988323
-
The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea
-
PMID:12125824
-
Deppenmeier U, Johann A, Hartsch T, Merkl R, Schmitz RA, Martinez-Arias R, et al. The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea. J Mol Microbiol Biotechnol 2002; 4:453-61; PMID:12125824.
-
(2002)
J Mol Microbiol Biotechnol
, vol.4
, pp. 453-461
-
-
Deppenmeier, U.1
Johann, A.2
Hartsch, T.3
Merkl, R.4
Schmitz, R.A.5
Martinez-Arias, R.6
-
45
-
-
33745394713
-
Global transcriptional analysis of Methanosarcina mazei strain Gö1 under different nitrogen availabilities
-
PMID:16625354
-
Veit K, Ehlers C, Ehrenreich A, Salmon K, Hovey R, Gunsalus RP, et al. Global transcriptional analysis of Methanosarcina mazei strain Gö1 under different nitrogen availabilities. Mol Genet Genomics 2006; 276:41-55; PMID:16625354; http://dx.doi.org/10.1007/s00438-006-0117-9.
-
(2006)
Mol Genet Genomics
, vol.276
, pp. 41-55
-
-
Veit, K.1
Ehlers, C.2
Ehrenreich, A.3
Salmon, K.4
Hovey, R.5
Gunsalus, R.P.6
-
46
-
-
49749117821
-
Insights into the NrpR regulon in Methanosarcina mazei Gö1
-
PMID:18415079
-
Weidenbach K, Ehlers C, Kock J, Ehrenreich A, Schmitz RA. Insights into the NrpR regulon in Methanosarcina mazei Gö1. Arch Microbiol 2008; 190:319-32; PMID:18415079; http://dx.doi.org/10.1007/s00203-008-0369-3.
-
(2008)
Arch Microbiol
, vol.190
, pp. 319-332
-
-
Weidenbach, K.1
Ehlers, C.2
Kock, J.3
Ehrenreich, A.4
Schmitz, R.A.5
-
47
-
-
37749047864
-
Deletion of the archaeal histone in Methanosarcina mazei Gö1 results in reduced growth and genomic transcription
-
PMID:18086209
-
Weidenbach K, Glöer J, Ehlers C, Sandman K, Reeve JN, Schmitz RA. Deletion of the archaeal histone in Methanosarcina mazei Gö1 results in reduced growth and genomic transcription. Mol Microbiol 2008; 67:662-71; PMID:18086209; http://dx.doi.org/10.1111/j.1365-2958.2007.06076.x.
-
(2008)
Mol Microbiol
, vol.67
, pp. 662-671
-
-
Weidenbach, K.1
Glöer, J.2
Ehlers, C.3
Sandman, K.4
Reeve, J.N.5
Schmitz, R.A.6
-
48
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
PMID:20164839
-
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, Sittka A, et al. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 2010; 464:250-5; PMID:20164839; http://dx.doi.org/10.1038/nature08756.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
Sittka, A.6
-
49
-
-
84856792673
-
Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs
-
PMID:22227116
-
Hale CR, Majumdar S, Elmore J, Pfister N, Compton M, Olson S, et al. Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs. Mol Cell 2012; 45:292-302; PMID:22227116; http://dx.doi.org/10.1016/j.molcel.2011.10.023.
-
(2012)
Mol Cell
, vol.45
, pp. 292-302
-
-
Hale, C.R.1
Majumdar, S.2
Elmore, J.3
Pfister, N.4
Compton, M.5
Olson, S.6
-
50
-
-
79953779608
-
Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/ Cas immune system
-
PMID:21343909
-
Sinkunas T, Gasiunas G, Fremaux C, Barrangou R, Horvath P, Siksnys V. Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/ Cas immune system. EMBO J 2011; 30:1335-42; PMID:21343909; http://dx.doi.org/ 10.1038/emboj.2011.41.
-
(2011)
EMBO J
, vol.30
, pp. 1335-1342
-
-
Sinkunas, T.1
Gasiunas, G.2
Fremaux, C.3
Barrangou, R.4
Horvath, P.5
Siksnys, V.6
-
51
-
-
0036225678
-
The genome of M. acetivorans reveals extensive metabolic and physiological diversity
-
PMID:11932238
-
Galagan JE, Nusbaum C, Roy A, Endrizzi MG, Macdonald P, FitzHugh W, et al. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res 2002; 12:532-42; PMID:11932238; http://dx.doi.org/10.1101/ gr.223902.
-
(2002)
Genome Res
, vol.12
, pp. 532-542
-
-
Galagan, J.E.1
Nusbaum, C.2
Roy, A.3
Endrizzi, M.G.4
Macdonald, P.5
FitzHugh, W.6
-
52
-
-
33751081532
-
The Methanosarcina barkeri genome: Comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes
-
PMID:16980466
-
Maeder DL, Anderson I, Brettin TS, Bruce DC, Gilna P, Han CS, et al. The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes. J Bacteriol 2006; 188:7922-31; PMID:16980466; http://dx.doi.org/10.1128/JB.00810-06.
-
(2006)
J Bacteriol
, vol.188
, pp. 7922-7931
-
-
Maeder, D.L.1
Anderson, I.2
Brettin, T.S.3
Bruce, D.C.4
Gilna, P.5
Han, C.S.6
-
53
-
-
84858659496
-
Mechanism of substrate selection by a highly specific CRISPR endoribonuclease
-
PMID:22345129
-
Sternberg SH, Haurwitz RE, Doudna JA. Mechanism of substrate selection by a highly specific CRISPR endoribonuclease. RNA 2012; 18:661-72; PMID:22345129; http://dx.doi.org/10.1261/rna.030882.111.
-
(2012)
RNA
, vol.18
, pp. 661-672
-
-
Sternberg, S.H.1
Haurwitz, R.E.2
Doudna, J.A.3
-
54
-
-
79958754524
-
Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
-
PMID:21507944
-
Lintner NG, Kerou M, Brumfield SK, Graham S, Liu H, Naismith JH, et al. Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J Biol Chem 2011; 286:21643-56; PMID:21507944; http://dx.doi.org/10.1074/jbc.M111.238485.
-
(2011)
J Biol Chem
, vol.286
, pp. 21643-21656
-
-
Lintner, N.G.1
Kerou, M.2
Brumfield, S.K.3
Graham, S.4
Liu, H.5
Naismith, J.H.6
-
55
-
-
84867389802
-
RNA processing enables predictable programming of gene expression
-
PMID:22983090
-
Qi L, Haurwitz RE, Shao W, Doudna JA, Arkin AP. RNA processing enables predictable programming of gene expression. Nat Biotechnol 2012; 30:1002-6; PMID:22983090; http://dx.doi.org/10.1038/nbt.2355.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 1002-1006
-
-
Qi, L.1
Haurwitz, R.E.2
Shao, W.3
Doudna, J.A.4
Arkin, A.P.5
-
56
-
-
77956621546
-
H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
-
PMID:20659289
-
Westra ER, Pul U, Heidrich N, Jore MM, Lundgren M, Stratmann T, et al. H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol Microbiol 2010; 77:1380-93; PMID:20659289; http://dx.doi.org/10.1111/j.1365-2958.2010.07315.x.
-
(2010)
Mol Microbiol
, vol.77
, pp. 1380-1393
-
-
Westra, E.R.1
Pul, U.2
Heidrich, N.3
Jore, M.M.4
Lundgren, M.5
Stratmann, T.6
-
57
-
-
0030900723
-
A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors
-
PMID:9122246
-
Metcalf WW, Zhang JK, Apolinario E, Sowers KR, Wolfe RS. A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors. Proc Natl Acad Sci USA 1997; 94:2626-31; PMID:9122246; http://dx.doi.org/10.1073/pnas.94.6.2626.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 2626-2631
-
-
Metcalf, W.W.1
Zhang, J.K.2
Apolinario, E.3
Sowers, K.R.4
Wolfe, R.S.5
-
58
-
-
0025675856
-
High efficiency transformation of Escherichia coli with plasmids
-
PMID:2265755
-
Inoue H, Nojima H, Okayama H. High efficiency transformation of Escherichia coli with plasmids. Gene 1990; 96:23-8; PMID:2265755; http://dx.doi.org/10.1016/0378-1119(90)90336-P.
-
(1990)
Gene
, vol.96
, pp. 23-28
-
-
Inoue, H.1
Nojima, H.2
Okayama, H.3
-
59
-
-
23744474252
-
Development of genetic methods and construction of a chromosomal glnK1 mutant in Methanosarcina mazei strain Gö1
-
PMID:15824904
-
Ehlers C, Weidenbach K, Veit K, Deppenmeier U, Metcalf WW, Schmitz RA. Development of genetic methods and construction of a chromosomal glnK1 mutant in Methanosarcina mazei strain Gö1. Mol Genet Genomics 2005; 273:290-8; PMID:15824904; http://dx.doi.org/10.1007/s00438-005-1128-7.
-
(2005)
Mol Genet Genomics
, vol.273
, pp. 290-298
-
-
Ehlers, C.1
Weidenbach, K.2
Veit, K.3
Deppenmeier, U.4
Metcalf, W.W.5
Schmitz, R.A.6
-
60
-
-
24344474413
-
Effects of nitrogen and carbon sources on transcription of soluble methyltransferases in Methanosarcina mazei strain Go1
-
PMID:16109956
-
Veit K, Ehlers C, Schmitz RA. Effects of nitrogen and carbon sources on transcription of soluble methyltransferases in Methanosarcina mazei strain Go1. J Bacteriol 2005; 187:6147-54; PMID:16109956; http://dx.doi.org/10.1128/JB.187. 17.6147-6154.2005.
-
(2005)
J Bacteriol
, vol.187
, pp. 6147-6154
-
-
Veit, K.1
Ehlers, C.2
Schmitz, R.A.3
-
61
-
-
76049099044
-
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability
-
PMID:19996181
-
Jäger D, Sharma CM, Thomsen J, Ehlers C, Vogel J, Schmitz RA. Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. Proc Natl Acad Sci USA 2009; 106:21878-82; PMID:19996181; http://dx.doi.org/10.1073/pnas.0909051106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 21878-21882
-
-
Jäger, D.1
Sharma, C.M.2
Thomsen, J.3
Ehlers, C.4
Vogel, J.5
Schmitz, R.A.6
-
62
-
-
84870600743
-
An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains
-
PMID:22965121
-
Jäger D, Pernitzsch SR, Richter AS, Backofen R, Sharma CM, Schmitz RA. An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains. Nucleic Acids Res 2012; 40:10964-79; PMID:22965121; http://dx.doi.org/10.1093/nar/gks847.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 10964-10979
-
-
Jäger, D.1
Pernitzsch, S.R.2
Richter, A.S.3
Backofen, R.4
Sharma, C.M.5
Schmitz, R.A.6
-
63
-
-
33751548288
-
Diversity of microRNAs in human and chimpanzee brain
-
PMID:17072315
-
Berezikov E, Thuemmler F, van Laake LW, Kondova I, Bontrop R, Cuppen E, et al. Diversity of microRNAs in human and chimpanzee brain. Nat Genet 2006; 38:1375-7; PMID:17072315; http://dx.doi.org/10.1038/ng1914.
-
(2006)
Nat Genet
, vol.38
, pp. 1375-1377
-
-
Berezikov, E.1
Thuemmler, F.2
Van Laake, L.W.3
Kondova, I.4
Bontrop, R.5
Cuppen, E.6
-
64
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker I, Fontana W, Stadler P, Bonhoeffer L, Tacker M, et al. Fast folding and comparison of RNA secondary structures. Monatshefte für Chemie - Chemical Monthly 1994; 125:167-88; http://dx.doi.org/10.1007/BF00818163.
-
(1994)
Monatshefte für Chemie - Chemical Monthly
, vol.125
, pp. 167-188
-
-
Hofacker, I.1
Fontana, W.2
Stadler, P.3
Bonhoeffer, L.4
Tacker, M.5
-
65
-
-
33644853766
-
Local RNA base pairing probabilities in large sequences
-
PMID:16368769
-
Bernhart SH, Hofacker IL, Stadler PF. Local RNA base pairing probabilities in large sequences. Bioinformatics 2006; 22:614-5; PMID:16368769; http://dx.doi.org/10.1093/bioinformatics/btk014.
-
(2006)
Bioinformatics
, vol.22
, pp. 614-615
-
-
Bernhart, S.H.1
Hofacker, I.L.2
Stadler, P.F.3
-
66
-
-
84863200501
-
Global or local? Predicting secondary structure and accessibility in mRNAs
-
PMID:22373926
-
Lange SJ, Maticzka D, Möhl M, Gagnon JN, Brown CM, Backofen R. Global or local? Predicting secondary structure and accessibility in mRNAs. Nucleic Acids Res 2012; 40:5215-26; PMID:22373926; http://dx.doi.org/10.1093/ nar/gks181.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5215-5226
-
-
Lange, S.J.1
Maticzka, D.2
Möhl, M.3
Gagnon, J.N.4
Brown, C.M.5
Backofen, R.6
-
67
-
-
77954269050
-
Freiburg RNA Tools: A web server integrating INTARNA, EXPARNA and LOCARNA
-
PMID:20444875
-
Smith C, Heyne S, Richter AS, Will S, Backofen R. Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA. Nucleic Acids Res 2010; 38(Web Server issue):W373-7; PMID:20444875; http://dx.doi.org/10.1093/nar/ gkq316.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.WEB SERVER ISSUE
-
-
Smith, C.1
Heyne, S.2
Richter, A.S.3
Will, S.4
Backofen, R.5
-
68
-
-
63849246525
-
Protein structure prediction on the Web: A case study using the Phyre server
-
PMID:19247286
-
Kelley LA, Sternberg MJ. Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 2009; 4:363-71; PMID:19247286; http://dx.doi.org/10.1038/nprot.2009.2.
-
(2009)
Nat Protoc
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
69
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
PMID:17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007; 23:2947-8; PMID:17846036; http://dx.doi.org/10.1093/bioinformatics/btm404.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
-
70
-
-
0033824470
-
DaliLite workbench for protein structure comparison
-
PMID:10980157
-
Holm L, Park J. DaliLite workbench for protein structure comparison. Bioinformatics 2000; 16:566-7; PMID:10980157; http://dx.doi.org/10.1093/ bioinformatics/16.6.566.
-
(2000)
Bioinformatics
, vol.16
, pp. 566-567
-
-
Holm, L.1
Park, J.2
-
71
-
-
58249121729
-
RNAalifold: Improved consensus structure prediction for RNA alignments
-
PMID:19014431
-
Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF. RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics 2008; 9:474; PMID:19014431; http://dx.doi.org/10.1186/1471-2105-9-474.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 474
-
-
Bernhart, S.H.1
Hofacker, I.L.2
Will, S.3
Gruber, A.R.4
Stadler, P.F.5
|