CRANN: Detecting adaptive evolution in protein-coding DNA sequences

Bioinformatics

Volumn 19, Issue 13, 2003, Pages 1726-

  Creevey, Chris J ^a   McInerney, J O ^a  

^a NATIONAL UNIVERSITY OF IRELAND   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PROTEIN;

ADAPTATION; ARTICLE; CODON; COMPUTER PROGRAM; DNA DETERMINATION; DNA SEQUENCE; GENETIC ANALYSIS; GENETIC CODE; GENETIC CONSERVATION; GENETIC SELECTION; HYPOTHESIS; NEIGHBOR JOINING METHOD; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL;

EID: 0141626870     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg225     Document Type: Article

References (5)

1. Creevey,C.J. and McInerney,J.O. (2002) An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences. Gene, 300, 43-51.
2. Li,W.H. (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol., 36, 96-99.
3. Li,W.H., Wu,C.I. and Luo,C.C. (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol., 2, 150-174.
4. Messier,W. and Stewart,C.B. (1997) Episodic adaptive evolution of primate lysozymes. Nature, 385, 151-154.
5. Saitou,N. and Nei,M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.