Depth as a potential driver of genetic structure of sebastes mentella across the north Atlantic ocean

ICES Journal of Marine Science

Volumn 66, Issue 4, 2009, Pages 680-690

  Stefánsson, Magnús Örn ^a   Reinert, Jákup ^b   Sigurosson, Orsteinn ^a   Kristinsson, Kristján ^a   Nedreaas, Kjell ^c   Pampoulie, Christophe ^a  

^a MARINE RESEARCH INSTITUTE   (Iceland)

^b Faroese Fisheries Laboratory   (Faroe Islands)

^c INSTITUTE OF MARINE RESEARCH   (Norway)

Author keywords

Microsatellite loci; Migration; North Atlantic Ocean; Redfish; Sebastes mentella

Indexed keywords

ALLELE; CLUSTER ANALYSIS; GENETIC STRUCTURE; MIGRATION; PERCIFORM; VERTICAL DISTRIBUTION;

ATLANTIC ISLANDS; ATLANTIC OCEAN; FAROE ISLANDS; IRMINGER SEA;

SEBASTES MENTELLA;

EID: 68349101938     PISSN: 10543139     EISSN: 10959289     Source Type: Journal    
DOI: 10.1093/icesjms/fsp059     Document Type: Article

References (53)

1. Anderson, M. J. 2001. A new method for non-parametric multivariate analysis of variance. Austral Ecology, 26: 32-46.
2. Begg, G. A., Friedland, K. D., and Pearce, J. B. 1999. Stock identification and its role in stock assessment and fisheries management: an overview. Fisheries Research, 43: 1-8.
3. Bohonak, A. J. 2002. IBD (Isolation by Distance): a program for analyses of isolation by distance. Journal of Heredity, 93: 153-154.
4. Christensen, V., Guénette, S., Heymans, J. J., Walters, C. J., Watson, R., Zeller, D., and Pauly, D. 2003. Hundred-year decline of North Atlantic predatory fishes. Fish and Fisheries, 4: 1-24.
5. Corander, J., and Marttinen, P. 2006. Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology, 15: 2833-2843.
6. Corander, J., Waldmann, P., Marttinen, P., and Sillanpaa, M. J. 2004. BAPS 2: enhanced possibilities for the analysis of genetic population structure. Bioinformatics, 20: 2363 -2369.
7. Corander, J., Waldmann, P., and Sillanpaa, M. J. 2003. Bayesian analysis of genetic differentiation between populations. Genetics, 163: 367-374.
8. Danísdóttir, A. K., Gíslason, D., Kristinsson, K., Stefánsson, M. Ö., Johansen, T., and Pampoulie, C. 2008. Population structure of deep-sea and oceanic Sebastes mentella in the Irminger Sea and the continental slope in Icelandic waters based on allozyme markers: are they cryptic species? Transactions of the American Fisheries Society, 137: 1723-1740.
9. Excoffier, L., Laval, G., and Schneider, S. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1: 47-50.
10. FAO. 2007. The State of the World Fisheries and Aquaculture 2006. FAO, Rome.
11. Gharrett, A. J., Matala, A. P., Peterson, E. L., Gray, A. K., and Li, Z. 2007. Distribution and population genetic structure of sibling rougheye rockfish species. In Biology, Assessment, and Management of North Pacific Rockfishes, pp. 121-183. Ed. by J. Heifetz, J. Dicosmo, A. J. Gharrett, M. S. Love, V. M. O'Connell, and R. D. Stanley. Alaska Sea Grant College-AK-SG-07-01.
12. Gomez-Uchida, D., Hoffman, E. A., Ardren, W. R., and Banks, M. A. 2003. Microsatellite markers for the heavily exploited canary (Sebastes pinniger) and other rockfish species. Molecular Ecology Notes, 3: 387-389.
13. Goudet, J. 1995. FSTAT (Version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86: 485-486.
14. Guo, S. W., and Thompson, E. A. 1992. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48:361 -372.
15. Hilborn, R., Quinn, T. P., Schindler, D. E., and Rogers, D. E. 2003. Biocomplexity and fisheries sustainability. Proceedings of the National Academy of Sciences of the United States of America,27: 6564-6568.
16. Hyde, J. R., Kimbrell, C. A., Budrick, J. E., Lynn, E. A., and Vetter,R. D. 2008. Cryptic speciation in the vermilion rockfish (Sebastes miniatus) and the role of bathymetry in the speciation process. Molecular Ecology, 17: 1122-1136.
17. ICES. 2001. Planning Group on Redfish Stocks. ICES Document CM 2001/D: 04 Ref. ACFM.
18. ICES. 2007. Report of the Arctic Fisheries Working Group (AFWG),18-27 April 2007, Vigo, Spain. ICES Document CM 2007/ACFM: 16. 641 pp.
19. ICES. 2008. Report of the Arctic Fisheries Working Group (AFWG),21 -29 April 2008, ICES Headquarters, Copenhagen. ICES Document CM 2008/ACOM: 01. 531 pp.
20. Joensen, H., and Grahl-Nielsen, O. 2004. Stock structure of Sebastes mentella in the North Atlantic revealed by chemometry of the fatty acid profile in heart tissue. ICES Journal of Marine Science, 61: 113-126.
21. Johansen, T., Danielsdottir, A. K., Meland, K., and Naevdal, G. 2000. Studies of the genetic relationship between deep-sea and oceanic Sebastes mentella in the Irminger Sea. Fisheries Research, 49:179-192.
22. Lage, C., Kuhn, K., and Kornfield, I. 2004. Genetic differentiation among Atlantic cod (Gadus morhua) from Browns Bank, Georges Bank, and Nantucket Shoals. Fishery Bulletin US, 102:289-297.
23. Magnússon, J. 1972. Tilraunir til karfaveida med midsjávarvörpu í úthafinu. Aegir, 65: 430-432.
24. Magnússon, J., and Magnússon, J. V. 1995. Oceanic redfish (Sebastes mentella) in the Irminger Sea and adjacent waters. Scientia Marina, 59: 241 -254.
25. Miller, K. M., Schulze, A. D., and Withler, R. E. 2000. Characterization of microsatellite loci in Sebastes alutus and their conservation in congeneric rockfish species. Molecular Ecology, 9: 240-242.
26. Morato, T., Watson, R., Pitcher, T. J., and Pauly, D. 2006. Fishing down the deep. Fish and Fisheries, 7: 24-34.
27. O'Leary, D. B., Coughlan, J., Dillane, E., McCarthy, T. V., and Cross, T. F. 2007. Microsatellite variation in cod Gadus morhua throughout its geographic range. Journal of Fish Biology, 70: 310-335.
28. Pampoulie, C., and Daníelsdóttir, A. K. 2008. Resolving species identification problems in the genus Sebastes using nuclear genetic markers. Fisheries Research, 93: 54-63.
29. Pampoulie, C., Ruzzante, D. E., Chosson, V., Jörundsdóttir, T. D., Taylor, L., Thorsteinsson, V., Daníelsdóttir, A. K., et al. 2006. The genetic structure of Atlantic cod (Gadus morhua) around Iceland: insight from microsatellites, the Pan I locus, and tagging experiments. Canadian Journal of Fisheries and Aquatic Sciences,63: 2660-2674.
30. Pampoulie, C., Steingrund, P., Stefánsson, M. Ö., and Danielsdottir, A. K. 2008. Genetic divergence among East Icelandic and Faroese populations of Atlantic cod provides evidence for historical imprints at neutral and non-neutral markers. ICES Journal of Marine Science, 65: 65 -71.
31. Raymond, M., and Rousset, F. 1995. An exact test for population differentiation. Evolution, 49: 1280-1283.
32. Rice, W. R. 1989. Analyzing tables of statistical tests. Evolution, 43: 223-225.
33. Rico, C., Ibrahim, K. M., Rico, I., and Hewitt, G. M. 1997. Stock composition in North Atlantic populations of whiting using microsa- tellites markers. Journal of Fish Biology, 51: 462-475.
34. Roques, S., Pallotta, D., Sevigny, J. M., and Bernatchez, L. 1999. Isolation and characterization of polymorphic microsatellite markers in the North Atlantic redfish (Teleostei: Scorpaenidae, genus Sebastes). Molecular Ecology, 8: 685-687.
35. Roques, S., Sevigny, J. M., and Bernatchez, L. 2002. Genetic structure of deep-water redfish, Sebastes mentella, populations across the North Atlantic. Marine Biology, 140: 297-307.
36. Ross, I., and Gentleman, R. 1996. R: a language for data analysis and graphics. Journal of Computational and Graphical Statistics, 5:299-314.
37. Ruzzante, D. E., Taggart, C. T., Cook, D., and Goddard, S. V. 1997. Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua) off Newfoundland: a test and evidence of temporal stability. Canadian Journal of Fisheries and Aquatic Sciences, 54: 2700-2708.
38. Sambrook, J., and Russell, D. W. 2001. Molecular Cloning: a Laboratory Manual. Cold Spring Harbour Laboratory Press, New York.
39. Sigur∂sson, Th., Kristinsson, K., Rätz, H-J., Nedreaas, K. H., Melnikov, S. P., and Reinert, J. 2006. The fishery for pelagic redfish (Sebastes mentella) in the Irminger Sea and adjacent waters. ICES Journal of Marine Science, 63: 725 -736.
40. Sokal, R. R., and Rohlf, F. J. 1995. Biometry, 3rd edn. W. H. Freeman and Co., New York.
41. Stefánsson, M. Ö., Gislason, D., Thorgilsson, B., Ragnarsdóttir, A., Daníelsdóttir, A. K., and Sigur∂sson, Th. 2004. Population structure of S. mentella within and around the Irminger Sea. Working Document to the Study Group on Stock Identity and Management Units of Redfishes. ICES Document CM 2003/ACFM WD: 07.
42. Stefánsson, M. Ö., and Pampoulie, C. 2006. The influence of depth in fishery management: evidence from redfish (Sebastes mentella) and cod (Gadus morhua). Journal of Fish Biology, 69(Suppl. C): 256.
43. Stefánsson, M. Ö., Pampoulie, C., Thorgilsson, B., Ragnarsdóttir, A., Glslason, D., Daníelsdóttir, A. K., and Sigur∂sson, f. 2006. Natural selection and adaptation of the deep-sea redfish Sebastes mentella. Journal of Fish Biology, 69(Suppl. C): 235.
44. Stefánsson, M. Ö., Sigurdsson, Th., Pampoulie, C., Daníelsdóttir, A. K., Thorgilsson, B., Ragnarsdóttir, A., Gíslason, D., et al. Pleistocene genetic legacy suggests incipient species of Sebastes mentella in the Irminger Sea. Heredity, in press.
45. Stephenson, R., and Kenchington, E. 2000. Conserving fish stock structure is a critical aspect of preserving biodiversity. ICES Document CM 2000/Mini: 07. 7 pp.
46. Tåning, A. V. 1949. On the breeding places and abundance of the redfish (Sebastes) in the North Atlantic. Journal du Conseil Permanent International pour l'Exploration de la Mer, 16: 85-95.
47. Vinnichenko, V. I. 2007. Russian investigations and fishery of the pelagic redfish in the Norwegian Sea. Working Document 9. ICES Arctic Fisheries Working Group, Vigo, 18 -27 April 2007. 23 pp.
48. Was, A., Gosling, E., McCrann, K., and Mork, J. 2008. Evidence for population structure of blue whiting (Micromesistius poutassou) in the Northeast Atlantic. ICES Journal of Marine Science, 65:216-225.
49. Walsh, P. S., Metzger, D. A., and Higuchi, R. 1991. Chelex-100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques, 10: 506-513.
50. Waples, R. S. 1998. Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species. Journal of Heredity, 89: 435-450.
51. Ward, R. D. 2000. Genetic in fisheries management. Hydrobiologia, 420: 191-201.
52. Weir, B. S., and Cockerham, C. C. 1984. Estimating F-statistics for the analysis of population-structure. Evolution, 38: 1358-1370.
53. Westgaard, J-I., and Fevolden, E. 2007. Atlantic cod (Gadus morhua L.) in inner and outer coastal zones of northern Norway display divergent genetic signature at non-neutral loci. Fisheries Research, 85:320-329.