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Volumn 14, Issue 1, 2014, Pages

Integrative analysis of young genes, positively selected genes and IncRNAs in the development of Drosophila melanogaster

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; DEVELOPMENTAL STAGE; FLY; GENE EXPRESSION; PHENOTYPE; PHENOTYPIC PLASTICITY; RNA; SELECTION;

EID: 84924114652     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/s12862-014-0241-9     Document Type: Article
Times cited : (11)

References (43)
  • 1
    • 0015070886 scopus 로고
    • Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty
    • Britten RJ, Davidson EH: Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty. Q Rev Biol 1971, 46:111-138.
    • (1971) Q Rev Biol , vol.46 , pp. 111-138
    • Britten, R.J.1    Davidson, E.H.2
  • 2
    • 0016669094 scopus 로고
    • Evolution at two levels in humans and chimpanzees
    • King M-C, Wilson AC: Evolution at two levels in humans and chimpanzees. Science 1975, 188(4184):107-116.
    • (1975) Science , vol.188 , Issue.4184 , pp. 107-116
    • King, M.-C.1    Wilson, A.C.2
  • 4
    • 22744439568 scopus 로고    scopus 로고
    • Evolution at two levels: On genes and form
    • Carroll SB: Evolution at two levels: on genes and form. PLoS Biol 2005, 3(7):e245.
    • (2005) PLoS Biol , vol.3 , Issue.7 , pp. e245
    • Carroll, S.B.1
  • 6
    • 46149104377 scopus 로고    scopus 로고
    • Evo-devo and an expanding evolutionary synthesis: A genetic theory of morphological evolution
    • Carroll SB: Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 2008, 134(1):25-36.
    • (2008) Cell , vol.134 , Issue.1 , pp. 25-36
    • Carroll, S.B.1
  • 8
    • 0347992009 scopus 로고    scopus 로고
    • Evolution of the human ASPM gene, a major determinant of brain size
    • Zhang J: Evolution of the human ASPM gene, a major determinant of brain size. Genetics 2003, 165(4):2063-2070.
    • (2003) Genetics , vol.165 , Issue.4 , pp. 2063-2070
    • Zhang, J.1
  • 9
    • 5444236355 scopus 로고    scopus 로고
    • Positive selection on the human genome
    • Vallender EJ, Lahn BT: Positive selection on the human genome. Hum Mol Genet 2004, 13(suppl 2):R245-R254.
    • (2004) Hum Mol Genet , vol.13 , pp. R245-R254
    • Vallender, E.J.1    Lahn, B.T.2
  • 11
    • 2942744749 scopus 로고    scopus 로고
    • Reconstructing the evolutionary history of microcephalin, a gene controlling human brain size
    • Evans PD, Anderson JR, Vallender EJ, Choi SS, Lahn BT: Reconstructing the evolutionary history of microcephalin, a gene controlling human brain size. Hum Mol Genet 2004, 13(11):1139-1145.
    • (2004) Hum Mol Genet , vol.13 , Issue.11 , pp. 1139-1145
    • Evans, P.D.1    Anderson, J.R.2    Vallender, E.J.3    Choi, S.S.4    Lahn, B.T.5
  • 12
    • 2942737273 scopus 로고    scopus 로고
    • Molecular evolution of microcephalin, a gene determining human brain size
    • Y-q W, Su B: Molecular evolution of microcephalin, a gene determining human brain size. Hum Mol Genet 2004, 13(11):1131-1137.
    • (2004) Hum Mol Genet , vol.13 , Issue.11 , pp. 1131-1137
    • Y-q, W.1    Su, B.2
  • 14
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: Evo devo and the genetics of adaptation
    • Hoekstra HE, Coyne JA: The locus of evolution: evo devo and the genetics of adaptation. Evolution 2007, 61(5):995-1016.
    • (2007) Evolution , vol.61 , Issue.5 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 16
    • 34247248182 scopus 로고    scopus 로고
    • Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolution
    • Gojobori J, Tang H, Akey JM, Wu C-I: Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolution. Proc Natl Acad Sci U S A 2007, 104(10):3907-3912.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.10 , pp. 3907-3912
    • Gojobori, J.1    Tang, H.2    Akey, J.M.3    Wu, C.-I.4
  • 17
    • 59849107271 scopus 로고    scopus 로고
    • Is genetic evolution predictable?
    • Stern DL, Orgogozo V: Is genetic evolution predictable? Science 2009, 323(5915):746-751.
    • (2009) Science , vol.323 , Issue.5915 , pp. 746-751
    • Stern, D.L.1    Orgogozo, V.2
  • 18
    • 84877930638 scopus 로고    scopus 로고
    • Evolution and function of de novo originated genes
    • Wu D-D, Zhang Y-P: Evolution and function of de novo originated genes. Mol Phylogenet Evol 2013, 67(2):541-545.
    • (2013) Mol Phylogenet Evol , vol.67 , Issue.2 , pp. 541-545
    • Wu, D.-D.1    Zhang, Y.-P.2
  • 19
    • 84882340111 scopus 로고    scopus 로고
    • New genes as drivers of phenotypic evolution
    • Chen S, Krinsky BH, Long M: New genes as drivers of phenotypic evolution. Nat Rev Genet 2013, 14(9):645-660.
    • (2013) Nat Rev Genet , vol.14 , Issue.9 , pp. 645-660
    • Chen, S.1    Krinsky, B.H.2    Long, M.3
  • 21
    • 78650385315 scopus 로고    scopus 로고
    • New genes in drosophila quickly become essential
    • Chen S, Zhang YE, Long M: New genes in drosophila quickly become essential. Science 2010, 330(6011):1682-1685.
    • (2010) Science , vol.330 , Issue.6011 , pp. 1682-1685
    • Chen, S.1    Zhang, Y.E.2    Long, M.3
  • 22
    • 81755187310 scopus 로고    scopus 로고
    • De novo origin of human protein-coding genes
    • Wu D-D, Irwin DM, Zhang Y-P: De novo origin of human protein-coding genes. PLoS Genet 2011, 7(11):e1002379.
    • (2011) PLoS Genet , vol.7 , Issue.11 , pp. e1002379
    • Wu, D.-D.1    Irwin, D.M.2    Zhang, Y.-P.3
  • 23
    • 80055025720 scopus 로고    scopus 로고
    • Accelerated recruitment of new brain development genes into the human genome
    • Zhang YE, Landback P, Vibranovski MD, Long M: Accelerated recruitment of new brain development genes into the human genome. PLoS Biol 2011, 9(10):e1001179.
    • (2011) PLoS Biol , vol.9 , Issue.10 , pp. e1001179
    • Zhang, Y.E.1    Landback, P.2    Vibranovski, M.D.3    Long, M.4
  • 24
    • 84861130103 scopus 로고    scopus 로고
    • Frequent recent origination of brain genes shaped the evolution of foraging behavior in drosophila
    • Chen S, Spletter M, Ni X, White KP, Luo L, Long M: Frequent recent origination of brain genes shaped the evolution of foraging behavior in drosophila. Cell Rep 2012, 1(2):118-132.
    • (2012) Cell Rep , vol.1 , Issue.2 , pp. 118-132
    • Chen, S.1    Spletter, M.2    Ni, X.3    White, K.P.4    Luo, L.5    Long, M.6
  • 27
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • Langfelder P, Horvath S: WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 2008, 9(1):559.
    • (2008) BMC Bioinformatics , vol.9 , Issue.1 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 31
    • 70350023619 scopus 로고    scopus 로고
    • The maternal-to-zygotic transition: A play in two acts
    • Tadros W, Lipshitz HD: The maternal-to-zygotic transition: a play in two acts. Development 2009, 136(18):3033-3042.
    • (2009) Development , vol.136 , Issue.18 , pp. 3033-3042
    • Tadros, W.1    Lipshitz, H.D.2
  • 32
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z: Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 2005, 22(12):2472-2479.
    • (2005) Mol Biol Evol , vol.22 , Issue.12 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 33
    • 34547616501 scopus 로고    scopus 로고
    • The new mutation theory of phenotypic evolution
    • Nei M: The new mutation theory of phenotypic evolution. Proc Natl Acad Sci U S A 2007, 104(30):12235-12242.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.30 , pp. 12235-12242
    • Nei, M.1
  • 34
    • 33746885883 scopus 로고    scopus 로고
    • Systemic determinants of gene evolution and function
    • Epub
    • Koonin EV: Systemic determinants of gene evolution and function. Mol Syst Biol 2005, 1(1): Epub.
    • (2005) Mol Syst Biol , vol.1 , Issue.1
    • Koonin, E.V.1
  • 35
    • 79960698975 scopus 로고    scopus 로고
    • Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
    • Kong Y: Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies. Genomics 2011, 98(2):152-153.
    • (2011) Genomics , vol.98 , Issue.2 , pp. 152-153
    • Kong, Y.1
  • 36
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL: TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25(9):1105-1111.
    • (2009) Bioinformatics , vol.25 , Issue.9 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 37
    • 34547582418 scopus 로고    scopus 로고
    • CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
    • Kong L, Zhang Y, Ye Z-Q, Liu X-Q, Zhao S-Q, Wei L, Gao G: CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res 2007, 35(suppl 2):W345-W349.
    • (2007) Nucleic Acids Res , vol.35 , pp. W345-W349
    • Kong, L.1    Zhang, Y.2    Ye, Z.-Q.3    Liu, X.-Q.4    Zhao, S.-Q.5    Wei, L.6    Gao, G.7
  • 39
    • 84864065413 scopus 로고    scopus 로고
    • ProteinHistorian: Tools for the comparative analysis of eukaryote protein origin
    • Prlic A, Capra JA, Williams AG, Pollard KS: ProteinHistorian: tools for the comparative analysis of eukaryote protein origin. PLoS Comput Biol 2012, 8(6):e1002567.
    • (2012) PLoS Comput Biol , vol.8 , Issue.6 , pp. e1002567
    • Prlic, A.1    Capra, J.A.2    Williams, A.G.3    Pollard, K.S.4
  • 41
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z: PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24(8):1586-1591.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1
  • 43
    • 77953212372 scopus 로고    scopus 로고
    • Gene ontology analysis for RNA-seq: Accounting for selection bias
    • Young MD, Wakefield MJ, Smyth GK, Oshlack A: Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol 2010, 11(2):R14.
    • (2010) Genome Biol , vol.11 , Issue.2 , pp. R14
    • Young, M.D.1    Wakefield, M.J.2    Smyth, G.K.3    Oshlack, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.