-
1
-
-
0015070886
-
Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty
-
Britten RJ, Davidson EH: Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty. Q Rev Biol 1971, 46:111-138.
-
(1971)
Q Rev Biol
, vol.46
, pp. 111-138
-
-
Britten, R.J.1
Davidson, E.H.2
-
2
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King M-C, Wilson AC: Evolution at two levels in humans and chimpanzees. Science 1975, 188(4184):107-116.
-
(1975)
Science
, vol.188
, Issue.4184
, pp. 107-116
-
-
King, M.-C.1
Wilson, A.C.2
-
4
-
-
22744439568
-
Evolution at two levels: On genes and form
-
Carroll SB: Evolution at two levels: on genes and form. PLoS Biol 2005, 3(7):e245.
-
(2005)
PLoS Biol
, vol.3
, Issue.7
, pp. e245
-
-
Carroll, S.B.1
-
6
-
-
46149104377
-
Evo-devo and an expanding evolutionary synthesis: A genetic theory of morphological evolution
-
Carroll SB: Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 2008, 134(1):25-36.
-
(2008)
Cell
, vol.134
, Issue.1
, pp. 25-36
-
-
Carroll, S.B.1
-
7
-
-
65849256049
-
A humanized version of Foxp2 affects cortico-basal ganglia circuits in mice
-
Enard W, Gehre S, Hammerschmidt K, Hölter SM, Blass T, Somel M, Brückner MK, Schreiweis C, Winter C, Sohr R, Becker L, Wiebe V, Nickel B, Giger T, Müller U, Groszer M, Adler T, Aguilar A, Bolle I, Calzada-Wack J, Dalke C, Ehrhardt N, Favor J, Fuchs H, Gailus-Durner V, Hans W, Hölzlwimmer G, Javaheri A, Kalaydjiev S, Kallnik M, et al : A humanized version of Foxp2 affects cortico-basal ganglia circuits in mice. Cell 2009, 137(5):961-971.
-
(2009)
Cell
, vol.137
, Issue.5
, pp. 961-971
-
-
Enard, W.1
Gehre, S.2
Hammerschmidt, K.3
Hölter, S.M.4
Blass, T.5
Somel, M.6
Brückner, M.K.7
Schreiweis, C.8
Winter, C.9
Sohr, R.10
Becker, L.11
Wiebe, V.12
Nickel, B.13
Giger, T.14
Müller, U.15
Groszer, M.16
Adler, T.17
Aguilar, A.18
Bolle, I.19
Calzada-Wack, J.20
Dalke, C.21
Ehrhardt, N.22
Favor, J.23
Fuchs, H.24
Gailus-Durner, V.25
Hans, W.26
Hölzlwimmer, G.27
Javaheri, A.28
Kalaydjiev, S.29
Kallnik, M.30
more..
-
8
-
-
0347992009
-
Evolution of the human ASPM gene, a major determinant of brain size
-
Zhang J: Evolution of the human ASPM gene, a major determinant of brain size. Genetics 2003, 165(4):2063-2070.
-
(2003)
Genetics
, vol.165
, Issue.4
, pp. 2063-2070
-
-
Zhang, J.1
-
9
-
-
5444236355
-
Positive selection on the human genome
-
Vallender EJ, Lahn BT: Positive selection on the human genome. Hum Mol Genet 2004, 13(suppl 2):R245-R254.
-
(2004)
Hum Mol Genet
, vol.13
, pp. R245-R254
-
-
Vallender, E.J.1
Lahn, B.T.2
-
10
-
-
1542329549
-
Adaptive evolution of ASPM, a major determinant of cerebral cortical size in humans
-
Evans PD, Anderson JR, Vallender EJ, Gilbert SL, Malcom CM, Dorus S, Lahn BT: Adaptive evolution of ASPM, a major determinant of cerebral cortical size in humans. Hum Mol Genet 2004, 13(5):489-494.
-
(2004)
Hum Mol Genet
, vol.13
, Issue.5
, pp. 489-494
-
-
Evans, P.D.1
Anderson, J.R.2
Vallender, E.J.3
Gilbert, S.L.4
Malcom, C.M.5
Dorus, S.6
Lahn, B.T.7
-
11
-
-
2942744749
-
Reconstructing the evolutionary history of microcephalin, a gene controlling human brain size
-
Evans PD, Anderson JR, Vallender EJ, Choi SS, Lahn BT: Reconstructing the evolutionary history of microcephalin, a gene controlling human brain size. Hum Mol Genet 2004, 13(11):1139-1145.
-
(2004)
Hum Mol Genet
, vol.13
, Issue.11
, pp. 1139-1145
-
-
Evans, P.D.1
Anderson, J.R.2
Vallender, E.J.3
Choi, S.S.4
Lahn, B.T.5
-
12
-
-
2942737273
-
Molecular evolution of microcephalin, a gene determining human brain size
-
Y-q W, Su B: Molecular evolution of microcephalin, a gene determining human brain size. Hum Mol Genet 2004, 13(11):1131-1137.
-
(2004)
Hum Mol Genet
, vol.13
, Issue.11
, pp. 1131-1137
-
-
Y-q, W.1
Su, B.2
-
13
-
-
0037158715
-
Molecular evolution of FOXP2, a gene involved in speech and language
-
Enard W, Przeworski M, Fisher SE, Lai CSL, Wiebe V, Kitano T, Monaco AP, Paabo S: Molecular evolution of FOXP2, a gene involved in speech and language. Nature 2002, 418(6900):869-872.
-
(2002)
Nature
, vol.418
, Issue.6900
, pp. 869-872
-
-
Enard, W.1
Przeworski, M.2
Fisher, S.E.3
Lai, C.S.L.4
Wiebe, V.5
Kitano, T.6
Monaco, A.P.7
Paabo, S.8
-
14
-
-
34247855863
-
The locus of evolution: Evo devo and the genetics of adaptation
-
Hoekstra HE, Coyne JA: The locus of evolution: evo devo and the genetics of adaptation. Evolution 2007, 61(5):995-1016.
-
(2007)
Evolution
, vol.61
, Issue.5
, pp. 995-1016
-
-
Hoekstra, H.E.1
Coyne, J.A.2
-
15
-
-
44949129000
-
Assessing the evolutionary impact of amino acid mutations in the human genome
-
Boyko AR, Williamson SH, Indap AR, Degenhardt JD, Hernandez RD, Lohmueller KE, Adams MD, Schmidt S, Sninsky JJ, Sunyaev SR: Assessing the evolutionary impact of amino acid mutations in the human genome. PLoS Genet 2008, 4(5):e1000083.
-
(2008)
PLoS Genet
, vol.4
, Issue.5
, pp. e1000083
-
-
Boyko, A.R.1
Williamson, S.H.2
Indap, A.R.3
Degenhardt, J.D.4
Hernandez, R.D.5
Lohmueller, K.E.6
Adams, M.D.7
Schmidt, S.8
Sninsky, J.J.9
Sunyaev, S.R.10
-
16
-
-
34247248182
-
Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolution
-
Gojobori J, Tang H, Akey JM, Wu C-I: Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolution. Proc Natl Acad Sci U S A 2007, 104(10):3907-3912.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.10
, pp. 3907-3912
-
-
Gojobori, J.1
Tang, H.2
Akey, J.M.3
Wu, C.-I.4
-
17
-
-
59849107271
-
Is genetic evolution predictable?
-
Stern DL, Orgogozo V: Is genetic evolution predictable? Science 2009, 323(5915):746-751.
-
(2009)
Science
, vol.323
, Issue.5915
, pp. 746-751
-
-
Stern, D.L.1
Orgogozo, V.2
-
18
-
-
84877930638
-
Evolution and function of de novo originated genes
-
Wu D-D, Zhang Y-P: Evolution and function of de novo originated genes. Mol Phylogenet Evol 2013, 67(2):541-545.
-
(2013)
Mol Phylogenet Evol
, vol.67
, Issue.2
, pp. 541-545
-
-
Wu, D.-D.1
Zhang, Y.-P.2
-
19
-
-
84882340111
-
New genes as drivers of phenotypic evolution
-
Chen S, Krinsky BH, Long M: New genes as drivers of phenotypic evolution. Nat Rev Genet 2013, 14(9):645-660.
-
(2013)
Nat Rev Genet
, vol.14
, Issue.9
, pp. 645-660
-
-
Chen, S.1
Krinsky, B.H.2
Long, M.3
-
20
-
-
84888581378
-
New gene evolution: Little did we know
-
Long M, VanKuren NW, Chen S, Vibranovski MD: New gene evolution: little did we know. Ann Rev Genet 2013, 47(1):307-333.
-
(2013)
Ann Rev Genet
, vol.47
, Issue.1
, pp. 307-333
-
-
Long, M.1
VanKuren, N.W.2
Chen, S.3
Vibranovski, M.D.4
-
21
-
-
78650385315
-
New genes in drosophila quickly become essential
-
Chen S, Zhang YE, Long M: New genes in drosophila quickly become essential. Science 2010, 330(6011):1682-1685.
-
(2010)
Science
, vol.330
, Issue.6011
, pp. 1682-1685
-
-
Chen, S.1
Zhang, Y.E.2
Long, M.3
-
22
-
-
81755187310
-
De novo origin of human protein-coding genes
-
Wu D-D, Irwin DM, Zhang Y-P: De novo origin of human protein-coding genes. PLoS Genet 2011, 7(11):e1002379.
-
(2011)
PLoS Genet
, vol.7
, Issue.11
, pp. e1002379
-
-
Wu, D.-D.1
Irwin, D.M.2
Zhang, Y.-P.3
-
23
-
-
80055025720
-
Accelerated recruitment of new brain development genes into the human genome
-
Zhang YE, Landback P, Vibranovski MD, Long M: Accelerated recruitment of new brain development genes into the human genome. PLoS Biol 2011, 9(10):e1001179.
-
(2011)
PLoS Biol
, vol.9
, Issue.10
, pp. e1001179
-
-
Zhang, Y.E.1
Landback, P.2
Vibranovski, M.D.3
Long, M.4
-
24
-
-
84861130103
-
Frequent recent origination of brain genes shaped the evolution of foraging behavior in drosophila
-
Chen S, Spletter M, Ni X, White KP, Luo L, Long M: Frequent recent origination of brain genes shaped the evolution of foraging behavior in drosophila. Cell Rep 2012, 1(2):118-132.
-
(2012)
Cell Rep
, vol.1
, Issue.2
, pp. 118-132
-
-
Chen, S.1
Spletter, M.2
Ni, X.3
White, K.P.4
Luo, L.5
Long, M.6
-
25
-
-
77950801106
-
A human-specific de novo protein-coding gene associated with human brain functions
-
Li C-Y, Zhang Y, Wang Z, Zhang Y, Cao C, Zhang P-W, Lu S-J, Li X-M, Yu Q, Zheng X, Du Q, Uhl GR, Liu Q-R, Wei L: A human-specific de novo protein-coding gene associated with human brain functions. PLoS Comput Biol 2010, 6(3):e1000734.
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.3
, pp. e1000734
-
-
Li, C.-Y.1
Zhang, Y.2
Wang, Z.3
Zhang, Y.4
Cao, C.5
Zhang, P.-W.6
Lu, S.-J.7
Li, X.-M.8
Yu, Q.9
Zheng, X.10
Du, Q.11
Uhl, G.R.12
Liu, Q.-R.13
Wei, L.14
-
26
-
-
79953043801
-
The developmental transcriptome of drosophila melanogaster
-
Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, Baren MJV, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, et al: The developmental transcriptome of drosophila melanogaster. Nature 2011, 471:473-479.
-
(2011)
Nature
, vol.471
, pp. 473-479
-
-
Graveley, B.R.1
Brooks, A.N.2
Carlson, J.W.3
Duff, M.O.4
Landolin, J.M.5
Yang, L.6
Artieri, C.G.7
Baren, M.J.V.8
Boley, N.9
Booth, B.W.10
Brown, J.B.11
Cherbas, L.12
Davis, C.A.13
Dobin, A.14
Li, R.15
Lin, W.16
Malone, J.H.17
Mattiuzzo, N.R.18
Miller, D.19
Sturgill, D.20
Tuch, B.B.21
Zaleski, C.22
Zhang, D.23
Blanchette, M.24
Dudoit, S.25
Eads, B.26
Green, R.E.27
Hammonds, A.28
Jiang, L.29
Kapranov, P.30
more..
-
27
-
-
60549111634
-
WGCNA: An R package for weighted correlation network analysis
-
Langfelder P, Horvath S: WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 2008, 9(1):559.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
28
-
-
84866518216
-
An anatomically comprehensive atlas of the adult human brain transcriptome
-
Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, Daly BD, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, et al: An anatomically comprehensive atlas of the adult human brain transcriptome. Nature 2012, 489(7416):391-399.
-
(2012)
Nature
, vol.489
, Issue.7416
, pp. 391-399
-
-
Hawrylycz, M.J.1
Lein, E.S.2
Guillozet-Bongaarts, A.L.3
Shen, E.H.4
Ng, L.5
Miller, J.A.6
Van De Lagemaat, L.N.7
Smith, K.A.8
Ebbert, A.9
Riley, Z.L.10
Abajian, C.11
Beckmann, C.F.12
Bernard, A.13
Bertagnolli, D.14
Boe, A.F.15
Cartagena, P.M.16
Chakravarty, M.M.17
Chapin, M.18
Chong, J.19
Dalley, R.A.20
Daly, B.D.21
Dang, C.22
Datta, S.23
Dee, N.24
Dolbeare, T.A.25
Faber, V.26
Feng, D.27
Fowler, D.R.28
Goldy, J.29
Gregor, B.W.30
more..
-
29
-
-
80054993342
-
Spatio-temporal transcriptome of the human brain
-
Kang HJ, Kawasawa YI, Cheng F, Zhu Y, Xu X, Li M, Sousa AMM, Pletikos M, Meyer KA, Sedmak G, Guennel T, Shin Y, Johnson MB, Krsnik Ž, Mayer S, Fertuzinhos S, Umlauf S, Lisgo SN, Vortmeyer A, Weinberger DR, Mane S, Hyde TM, Huttner A, Reimers M, Kleinman JE, Šestan N: Spatio-temporal transcriptome of the human brain. Nature 2011, 478(7370):483-489.
-
(2011)
Nature
, vol.478
, Issue.7370
, pp. 483-489
-
-
Kang, H.J.1
Kawasawa, Y.I.2
Cheng, F.3
Zhu, Y.4
Xu, X.5
Li, M.6
Sousa, A.M.M.7
Pletikos, M.8
Meyer, K.A.9
Sedmak, G.10
Guennel, T.11
Shin, Y.12
Johnson, M.B.13
Krsnik, Ž.14
Mayer, S.15
Fertuzinhos, S.16
Umlauf, S.17
Lisgo, S.N.18
Vortmeyer, A.19
Weinberger, D.R.20
Mane, S.21
Hyde, T.M.22
Huttner, A.23
Reimers, M.24
Kleinman, J.E.25
Šestan, N.26
more..
-
30
-
-
65549085440
-
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi
-
Mummery-Widmer JL, Yamazaki M, Stoeger T, Novatchkova M, Bhalerao S, Chen D, Dietzl G, Dickson BJ, Knoblich JA: Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. Nature 2009, 458(7241):987-992.
-
(2009)
Nature
, vol.458
, Issue.7241
, pp. 987-992
-
-
Mummery-Widmer, J.L.1
Yamazaki, M.2
Stoeger, T.3
Novatchkova, M.4
Bhalerao, S.5
Chen, D.6
Dietzl, G.7
Dickson, B.J.8
Knoblich, J.A.9
-
31
-
-
70350023619
-
The maternal-to-zygotic transition: A play in two acts
-
Tadros W, Lipshitz HD: The maternal-to-zygotic transition: a play in two acts. Development 2009, 136(18):3033-3042.
-
(2009)
Development
, vol.136
, Issue.18
, pp. 3033-3042
-
-
Tadros, W.1
Lipshitz, H.D.2
-
32
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
Zhang J, Nielsen R, Yang Z: Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 2005, 22(12):2472-2479.
-
(2005)
Mol Biol Evol
, vol.22
, Issue.12
, pp. 2472-2479
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
-
33
-
-
34547616501
-
The new mutation theory of phenotypic evolution
-
Nei M: The new mutation theory of phenotypic evolution. Proc Natl Acad Sci U S A 2007, 104(30):12235-12242.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.30
, pp. 12235-12242
-
-
Nei, M.1
-
34
-
-
33746885883
-
Systemic determinants of gene evolution and function
-
Epub
-
Koonin EV: Systemic determinants of gene evolution and function. Mol Syst Biol 2005, 1(1): Epub.
-
(2005)
Mol Syst Biol
, vol.1
, Issue.1
-
-
Koonin, E.V.1
-
35
-
-
79960698975
-
Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
-
Kong Y: Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies. Genomics 2011, 98(2):152-153.
-
(2011)
Genomics
, vol.98
, Issue.2
, pp. 152-153
-
-
Kong, Y.1
-
36
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL: TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25(9):1105-1111.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
37
-
-
34547582418
-
CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
-
Kong L, Zhang Y, Ye Z-Q, Liu X-Q, Zhao S-Q, Wei L, Gao G: CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res 2007, 35(suppl 2):W345-W349.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W345-W349
-
-
Kong, L.1
Zhang, Y.2
Ye, Z.-Q.3
Liu, X.-Q.4
Zhao, S.-Q.5
Wei, L.6
Gao, G.7
-
38
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
39
-
-
84864065413
-
ProteinHistorian: Tools for the comparative analysis of eukaryote protein origin
-
Prlic A, Capra JA, Williams AG, Pollard KS: ProteinHistorian: tools for the comparative analysis of eukaryote protein origin. PLoS Comput Biol 2012, 8(6):e1002567.
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.6
, pp. e1002567
-
-
Prlic, A.1
Capra, J.A.2
Williams, A.G.3
Pollard, K.S.4
-
40
-
-
61649083057
-
BioMart-biological queries made easy
-
Smedley D, Haider S, Ballester B, Holland R, London D, Thorisson G, Kasprzyk A: BioMart-biological queries made easy. BMC Genomics 2009, 10(1):22.
-
(2009)
BMC Genomics
, vol.10
, Issue.1
, pp. 22
-
-
Smedley, D.1
Haider, S.2
Ballester, B.3
Holland, R.4
London, D.5
Thorisson, G.6
Kasprzyk, A.7
-
41
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z: PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24(8):1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
42
-
-
0038005018
-
DAVID: Database for annotation, visualization, and integrated discovery
-
Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA: DAVID: database for annotation, visualization, and integrated discovery. Genome Biol 2003, 4(5):3.
-
(2003)
Genome Biol
, vol.4
, Issue.5
, pp. 3
-
-
Dennis, G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
43
-
-
77953212372
-
Gene ontology analysis for RNA-seq: Accounting for selection bias
-
Young MD, Wakefield MJ, Smyth GK, Oshlack A: Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol 2010, 11(2):R14.
-
(2010)
Genome Biol
, vol.11
, Issue.2
, pp. R14
-
-
Young, M.D.1
Wakefield, M.J.2
Smyth, G.K.3
Oshlack, A.4
|