-
1
-
-
0032992297
-
Nitrogen management and the future of food: lessons from the management of energy and carbon
-
Socolow RH. Nitrogen management and the future of food: lessons from the management of energy and carbon. Proc Natl Acad Sci. 1999;96(11):6001-8.
-
(1999)
Proc Natl Acad Sci
, vol.96
, Issue.11
, pp. 6001-6008
-
-
Socolow, R.H.1
-
2
-
-
33644701160
-
Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity
-
Bi YM, Zhang Y, Signorelli T, Zhao R, Zhu T, Rothstein S. Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity. Plant J. 2005;44(4):680-92.
-
(2005)
Plant J
, vol.44
, Issue.4
, pp. 680-692
-
-
Bi, Y.M.1
Zhang, Y.2
Signorelli, T.3
Zhao, R.4
Zhu, T.5
Rothstein, S.6
-
3
-
-
0032536001
-
An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture
-
Zhang H. An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture. Science. 1998;279(5349):407-9.
-
(1998)
Science
, vol.279
, Issue.5349
, pp. 407-409
-
-
Zhang, H.1
-
4
-
-
68149162662
-
R2R3-type MYB transcription factor, CmMYB1, is a central nitrogen assimilation regulator in Cyanidioschyzon merolae
-
Imamura S, Kanesaki Y, Ohnuma M, Inouye T, Sekine Y, Fujiwara T, et al. R2R3-type MYB transcription factor, CmMYB1, is a central nitrogen assimilation regulator in Cyanidioschyzon merolae. Proc Natl Acad Sci. 2009;106(30):12548-53.
-
(2009)
Proc Natl Acad Sci
, vol.106
, Issue.30
, pp. 12548-12553
-
-
Imamura, S.1
Kanesaki, Y.2
Ohnuma, M.3
Inouye, T.4
Sekine, Y.5
Fujiwara, T.6
-
5
-
-
49449099340
-
Adaptation of Arabidopsis to nitrogen limitation involves induction of anthocyanin synthesis which is controlled by the NLA gene
-
Peng M, Hudson D, Schofield A, Tsao R, Yang R, Gu H, et al. Adaptation of Arabidopsis to nitrogen limitation involves induction of anthocyanin synthesis which is controlled by the NLA gene. J Exp Bot. 2008;59(11):2933-44.
-
(2008)
J Exp Bot
, vol.59
, Issue.11
, pp. 2933-2944
-
-
Peng, M.1
Hudson, D.2
Schofield, A.3
Tsao, R.4
Yang, R.5
Gu, H.6
-
6
-
-
77952374633
-
Effects of AOX1a deficiency on plant growth, gene expression of respiratory components and metabolic profile under low-nitrogen stress in Arabidopsis thaliana
-
Watanabe CK, Hachiya T, Takahara K, Kawai-Yamada M, Uchimiya H, Uesono Y, et al. Effects of AOX1a deficiency on plant growth, gene expression of respiratory components and metabolic profile under low-nitrogen stress in Arabidopsis thaliana. Plant Cell Physiol. 2010;51(5):810-22.
-
(2010)
Plant Cell Physiol
, vol.51
, Issue.5
, pp. 810-822
-
-
Watanabe, C.K.1
Hachiya, T.2
Takahara, K.3
Kawai-Yamada, M.4
Uchimiya, H.5
Uesono, Y.6
-
7
-
-
33646943536
-
A central role for the nitrate transporter NRT2.1 in the integrated morphological and physiological responses of the root system to nitrogen limitation in Arabidopsis
-
Remans T, Nacry P, Pervent M, Girin T, Tillard P, Lepetit M, et al. A central role for the nitrate transporter NRT2.1 in the integrated morphological and physiological responses of the root system to nitrogen limitation in Arabidopsis. Plant Physiol. 2006;140(3):909-21.
-
(2006)
Plant Physiol
, vol.140
, Issue.3
, pp. 909-921
-
-
Remans, T.1
Nacry, P.2
Pervent, M.3
Girin, T.4
Tillard, P.5
Lepetit, M.6
-
8
-
-
33846378526
-
Reciprocal leaf and root expression of AtAmt1.1 and root architectural changes in response to nitrogen starvation
-
Engineer CB, Kranz RG. Reciprocal leaf and root expression of AtAmt1.1 and root architectural changes in response to nitrogen starvation. Plant Physiol. 2007;143(1):236-50.
-
(2007)
Plant Physiol
, vol.143
, Issue.1
, pp. 236-250
-
-
Engineer, C.B.1
Kranz, R.G.2
-
9
-
-
2442705377
-
Metabolic engineering with Dof1 transcription factor in plants: improved nitrogen assimilation and growth under low-nitrogen conditions
-
Yanagisawa S, Akiyama A, Kisaka H, Uchimiya H, Miwa T. Metabolic engineering with Dof1 transcription factor in plants: improved nitrogen assimilation and growth under low-nitrogen conditions. Proc Natl Acad Sci. 2004;101(20):7833-8.
-
(2004)
Proc Natl Acad Sci
, vol.101
, Issue.20
, pp. 7833-7838
-
-
Yanagisawa, S.1
Akiyama, A.2
Kisaka, H.3
Uchimiya, H.4
Miwa, T.5
-
10
-
-
0034943198
-
Over-expression of cytosolic glutamine synthetase increases photosynthesis and growth at low nitrogen concentrations
-
Fuentes SI, Allen DJ, Ortiz-Lopez A, Hernandez G. Over-expression of cytosolic glutamine synthetase increases photosynthesis and growth at low nitrogen concentrations. J Exp Bot. 2001;52(358):1071-81.
-
(2001)
J Exp Bot
, vol.52
, Issue.358
, pp. 1071-1081
-
-
Fuentes, S.I.1
Allen, D.J.2
Ortiz-Lopez, A.3
Hernandez, G.4
-
11
-
-
33845801278
-
Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production
-
Martin A, Lee J, Kichey T, Gerentes D, Zivy M, Tatout C, et al. Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Plant Cell. 2006;18(11):3252-74.
-
(2006)
Plant Cell
, vol.18
, Issue.11
, pp. 3252-3274
-
-
Martin, A.1
Lee, J.2
Kichey, T.3
Gerentes, D.4
Zivy, M.5
Tatout, C.6
-
12
-
-
0036010138
-
Genetic manipulation and quantitative-trait loci mapping for nitrogen recycling in rice
-
Yamaya T, Obara M, Nakajima H, Sasaki S, Hayakawa T, Sato T. Genetic manipulation and quantitative-trait loci mapping for nitrogen recycling in rice. J Exp Bot. 2002;53(370):917-25.
-
(2002)
J Exp Bot
, vol.53
, Issue.370
, pp. 917-925
-
-
Yamaya, T.1
Obara, M.2
Nakajima, H.3
Sasaki, S.4
Hayakawa, T.5
Sato, T.6
-
13
-
-
34547907477
-
Engineering nitrogen use efficiency with alanine aminotransferase
-
Good AG, Johnson SJ, De Pauw M, Carroll RT, Savidov N, Vidmar J, et al. Engineering nitrogen use efficiency with alanine aminotransferase. Can J Bot. 2007;85:252-62.
-
(2007)
Can J Bot
, vol.85
, pp. 252-262
-
-
Good, A.G.1
Johnson, S.J.2
Pauw, M.3
Carroll, R.T.4
Savidov, N.5
Vidmar, J.6
-
14
-
-
49349091276
-
Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression of alanine aminotransferase
-
Shrawat AK, Carroll RT, DePauw M, Taylor GJ, Good AG. Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression of alanine aminotransferase. Plant Biotechnol J. 2008;6(7):722-32.
-
(2008)
Plant Biotechnol J
, vol.6
, Issue.7
, pp. 722-732
-
-
Shrawat, A.K.1
Carroll, R.T.2
DePauw, M.3
Taylor, G.J.4
Good, A.G.5
-
15
-
-
70449105246
-
Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling
-
Bi YM, Kant S, Clarke J, Gidda S, Ming F, Xu J, et al. Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling. Plant Cell Environ. 2009;32(12):1749-60.
-
(2009)
Plant Cell Environ
, vol.32
, Issue.12
, pp. 1749-1760
-
-
Bi, Y.M.1
Kant, S.2
Clarke, J.3
Gidda, S.4
Ming, F.5
Xu, J.6
-
16
-
-
0037783247
-
Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism
-
Wang R, Okamoto M, Xing X, Crawford NM. Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism. Plant Physiol. 2003;132(2):556-67.
-
(2003)
Plant Physiol
, vol.132
, Issue.2
, pp. 556-567
-
-
Wang, R.1
Okamoto, M.2
Xing, X.3
Crawford, N.M.4
-
17
-
-
36348952053
-
Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA
-
Peng M, Bi YM, Zhu T, Rothstein SJ. Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA. Plant Mol Biol. 2007;65(6):775-97.
-
(2007)
Plant Mol Biol
, vol.65
, Issue.6
, pp. 775-797
-
-
Peng, M.1
Bi, Y.M.2
Zhu, T.3
Rothstein, S.J.4
-
18
-
-
20044381102
-
Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants
-
Palenchar PM, Kouranov A, Lejay LV, Coruzzi GM. Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants. Genome Biol. 2004;5(11):R91.
-
(2004)
Genome Biol
, vol.5
, Issue.11
, pp. R91
-
-
Palenchar, P.M.1
Kouranov, A.2
Lejay, L.V.3
Coruzzi, G.M.4
-
19
-
-
34848890339
-
Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis
-
Bi Y-M, Wang R-L, Zhu T, Rothstein SJ. Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis. BMC Genom. 2007;8(1):281.
-
(2007)
BMC Genom
, vol.8
, Issue.1
, pp. 281
-
-
Bi, Y.-M.1
Wang, R.-L.2
Zhu, T.3
Rothstein, S.J.4
-
20
-
-
33646344515
-
Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray
-
Lian X, Wang S, Zhang J, Feng Q, Zhang L, Fan D, et al. Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray. Plant Mol Biol. 2006;60(5):617-31.
-
(2006)
Plant Mol Biol
, vol.60
, Issue.5
, pp. 617-631
-
-
Lian, X.1
Wang, S.2
Zhang, J.3
Feng, Q.4
Zhang, L.5
Fan, D.6
-
21
-
-
67650287043
-
Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase
-
Beatty PH, Shrawat AK, Carroll RT, Zhu T, Good AG. Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase. Plant Biotechnol J. 2009;7(6):562-76.
-
(2009)
Plant Biotechnol J
, vol.7
, Issue.6
, pp. 562-576
-
-
Beatty, P.H.1
Shrawat, A.K.2
Carroll, R.T.3
Zhu, T.4
Good, A.G.5
-
22
-
-
84866731676
-
Transcriptome response to nitrogen starvation in rice
-
Cai H, Lu Y, Xie W, Zhu T, Lian X. Transcriptome response to nitrogen starvation in rice. J Biosci. 2012;37(4):731-47.
-
(2012)
J Biosci
, vol.37
, Issue.4
, pp. 731-747
-
-
Cai, H.1
Lu, Y.2
Xie, W.3
Zhu, T.4
Lian, X.5
-
23
-
-
81755176108
-
Genome-wide identification of microRNAs in response to low nitrate availability in maize leaves and roots
-
Xu Z, Zhong S, Li X, Li W, Rothstein SJ, Zhang S, et al. Genome-wide identification of microRNAs in response to low nitrate availability in maize leaves and roots. PLoS One. 2011;6(11):e28009.
-
(2011)
PLoS One
, vol.6
, Issue.11
, pp. e28009
-
-
Xu, Z.1
Zhong, S.2
Li, X.3
Li, W.4
Rothstein, S.J.5
Zhang, S.6
-
24
-
-
84872193386
-
Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses
-
Humbert S, Subedi S, Cohn J, Zeng B, Bi YM, Chen X, et al. Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses. BMC Genom. 2013;14:3.
-
(2013)
BMC Genom
, vol.14
, pp. 3
-
-
Humbert, S.1
Subedi, S.2
Cohn, J.3
Zeng, B.4
Bi, Y.M.5
Chen, X.6
-
25
-
-
78650608472
-
Nitrogen stress response of a hybrid species: a gene expression study
-
Brouillette LC, Donovan LA. Nitrogen stress response of a hybrid species: a gene expression study. Ann Bot. 2011;107(1):101-8.
-
(2011)
Ann Bot
, vol.107
, Issue.1
, pp. 101-108
-
-
Brouillette, L.C.1
Donovan, L.A.2
-
26
-
-
0037291268
-
Constitutive expression of a novel-type ammonium transporter OsAMT2 in rice plants
-
Suenaga A, Moriya K, Sonoda Y, Ikeda A, von Wirén N, Hayakawa T, et al. Constitutive expression of a novel-type ammonium transporter OsAMT2 in rice plants. Plant Cell Physiol. 2003;44(2):206-11.
-
(2003)
Plant Cell Physiol
, vol.44
, Issue.2
, pp. 206-211
-
-
Suenaga, A.1
Moriya, K.2
Sonoda, Y.3
Ikeda, A.4
Wirén, N.5
Hayakawa, T.6
-
27
-
-
84874236029
-
Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics
-
Sakai H, Lee SS, Tanaka T, Numa H, Kim J, Kawahara Y, et al. Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics. Plant Cell Physiol. 2013;54(2):e6.
-
(2013)
Plant Cell Physiol
, vol.54
, Issue.2
, pp. e6
-
-
Sakai, H.1
Lee, S.S.2
Tanaka, T.3
Numa, H.4
Kim, J.5
Kawahara, Y.6
-
28
-
-
84875134412
-
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
-
Kawahara Y, de la Bastide M, Hamilton JP, Kanamori H, McCombie WR, Ouyang S, et al. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice. 2013;6(1):4.
-
(2013)
Rice
, vol.6
, Issue.1
, pp. 4
-
-
Kawahara, Y.1
Bastide, M.2
Hamilton, J.P.3
Kanamori, H.4
McCombie, W.R.5
Ouyang, S.6
-
29
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10(3):R25.
-
(2009)
Genome Biol
, vol.10
, Issue.3
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
30
-
-
84876996918
-
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013;14(4):R36.
-
(2013)
Genome Biol
, vol.14
, Issue.4
, pp. R36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
31
-
-
0036910174
-
T-DNA insertional mutagenesis for activation tagging in rice
-
Jeong DH, An S, Kang HG, Moon S, Han JJ, Park S, et al. T-DNA insertional mutagenesis for activation tagging in rice. Plant Physiol. 2002;130(4):1636-44.
-
(2002)
Plant Physiol
, vol.130
, Issue.4
, pp. 1636-1644
-
-
Jeong, D.H.1
An, S.2
Kang, H.G.3
Moon, S.4
Han, J.J.5
Park, S.6
-
32
-
-
84887965203
-
Analysis of the early-flowering mechanisms and generation of T-DNA tagging lines in Kitaake, a model rice cultivar
-
Kim SL, Choi M, Jung KH, An G. Analysis of the early-flowering mechanisms and generation of T-DNA tagging lines in Kitaake, a model rice cultivar. J Exp Bot. 2013;64(14):4169-82.
-
(2013)
J Exp Bot
, vol.64
, Issue.14
, pp. 4169-4182
-
-
Kim, S.L.1
Choi, M.2
Jung, K.H.3
An, G.4
-
33
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black DL. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem. 2003;72:291-336.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
34
-
-
38949133822
-
The search for alternative splicing regulators: new approaches offer a path to a splicing code
-
David CJ, Manley JL. The search for alternative splicing regulators: new approaches offer a path to a splicing code. Genes Dev. 2008;22(3):279-85.
-
(2008)
Genes Dev
, vol.22
, Issue.3
, pp. 279-285
-
-
David, C.J.1
Manley, J.L.2
-
35
-
-
18344364099
-
Understanding alternative sp licing: towards a cellular code
-
Matlin AJ, Clark F, Smith CW. Understanding alternative sp licing: towards a cellular code. Nat Rev Mol Cell Biol. 2005;6(5):386-98.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, Issue.5
, pp. 386-398
-
-
Matlin, A.J.1
Clark, F.2
Smith, C.W.3
-
36
-
-
4944241489
-
Intron retention is a major phenomenon in alternative splicing in Arabidopsis
-
Ner-Gaon H, Halachmi R, Savaldi-Goldstein S, Rubin E, Ophir R, Fluhr R. Intron retention is a major phenomenon in alternative splicing in Arabidopsis. Plant J. 2004;39(6):877-85.
-
(2004)
Plant J
, vol.39
, Issue.6
, pp. 877-885
-
-
Ner-Gaon, H.1
Halachmi, R.2
Savaldi-Goldstein, S.3
Rubin, E.4
Ophir, R.5
Fluhr, R.6
-
37
-
-
33646484347
-
Genomewide comparative analysis of alternative splicing in plants
-
Wang BB, Brendel V. Genomewide comparative analysis of alternative splicing in plants. Proc Natl Acad Sci. 2006;103(18):7175-80.
-
(2006)
Proc Natl Acad Sci
, vol.103
, Issue.18
, pp. 7175-7180
-
-
Wang, B.B.1
Brendel, V.2
-
38
-
-
47649124124
-
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
-
Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, et al. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science. 2008;321(5891):956-60.
-
(2008)
Science
, vol.321
, Issue.5891
, pp. 956-960
-
-
Sultan, M.1
Schulz, M.H.2
Richard, H.3
Magen, A.4
Klingenhoff, A.5
Scherf, M.6
-
39
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, et al. Alternative isoform regulation in human tissue transcriptomes. Nature. 2008;456(7221):470-6.
-
(2008)
Nature
, vol.456
, Issue.7221
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
-
40
-
-
84861890038
-
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
-
Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M. Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res. 2012;22(6):1184-95.
-
(2012)
Genome Res
, vol.22
, Issue.6
, pp. 1184-1195
-
-
Marquez, Y.1
Brown, J.W.2
Simpson, C.3
Barta, A.4
Kalyna, M.5
-
41
-
-
77951871117
-
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
-
Zhang G, Guo G, Hu X, Zhang Y, Li Q, Li R, et al. Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res. 2010;20(5):646-54.
-
(2010)
Genome Res
, vol.20
, Issue.5
, pp. 646-654
-
-
Zhang, G.1
Guo, G.2
Hu, X.3
Zhang, Y.4
Li, Q.5
Li, R.6
-
42
-
-
33744951518
-
Differential regulation of transcript accumulation and alternative splicing of a DREB2 homolog under abiotic stress conditions in common wheat
-
Egawa C, Kobayashi F, Ishibashi M, Nakamura T, Nakamura C, Takumi S. Differential regulation of transcript accumulation and alternative splicing of a DREB2 homolog under abiotic stress conditions in common wheat. Genes Genet Syst. 2006;81(2):77-91.
-
(2006)
Genes Genet Syst
, vol.81
, Issue.2
, pp. 77-91
-
-
Egawa, C.1
Kobayashi, F.2
Ishibashi, M.3
Nakamura, T.4
Nakamura, C.5
Takumi, S.6
-
43
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009;10(1):57-63.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.1
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
45
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28(5):511-5.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.5
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Baren, M.J.6
-
46
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012;7(3):562-78.
-
(2012)
Nat Protoc
, vol.7
, Issue.3
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
-
47
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Meth. 2008;5(7):621-8.
-
(2008)
Nat Meth
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
48
-
-
85013782742
-
Differential expression of RNA-Seq data at the gene level-the DESeq package
-
Anders S, Huber W. Differential expression of RNA-Seq data at the gene level-the DESeq package. Eur Mol Biol Lab. 2013.
-
Eur Mol Biol Lab
-
-
Anders, S.1
Huber, W.2
-
49
-
-
77955214742
-
RNA-Seq atlas of Glycine max: a guide to the soybean transcriptome
-
Severin AJ, Woody JL, Bolon YT, Joseph B, Diers BW, Farmer AD, et al. RNA-Seq atlas of Glycine max: a guide to the soybean transcriptome. BMC Plant Biol. 2010;10:160.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 160
-
-
Severin, A.J.1
Woody, J.L.2
Bolon, Y.T.3
Joseph, B.4
Diers, B.W.5
Farmer, A.D.6
-
50
-
-
58349111875
-
AmiGO: online access to ontology and annotation data
-
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S, et al. AmiGO: online access to ontology and annotation data. Bioinformatics. 2009;25(2):288-9.
-
(2009)
Bioinformatics
, vol.25
, Issue.2
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
Shu, S.4
Marshall, B.5
Lewis, S.6
-
51
-
-
43949138227
-
Blast2GO: a comprehensive suite for functional analysis in plant genomics
-
Conesa A, Gotz S. Blast2GO: a comprehensive suite for functional analysis in plant genomics. Intl J Plant Genom. 2008;2008:619832.
-
(2008)
Intl J Plant Genom
, vol.2008
, pp. 619832
-
-
Conesa, A.1
Gotz, S.2
-
52
-
-
80051941094
-
Identification of novel transcripts in annotated genomes using RNA-Seq
-
Roberts A, Pimentel H, Trapnell C, Pachter L. Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics. 2011;27(17):2325-9.
-
(2011)
Bioinformatics
, vol.27
, Issue.17
, pp. 2325-2329
-
-
Roberts, A.1
Pimentel, H.2
Trapnell, C.3
Pachter, L.4
-
53
-
-
0033918191
-
T-DNA insertional mutagenesis for functional genomics in rice
-
Jeon JS, Lee S, Jung KH, Jun SH, Jeong DH, Lee J, et al. T-DNA insertional mutagenesis for functional genomics in rice. Plant J. 2000;22(6):561-70.
-
(2000)
Plant J
, vol.22
, Issue.6
, pp. 561-570
-
-
Jeon, J.S.1
Lee, S.2
Jung, K.H.3
Jun, S.H.4
Jeong, D.H.5
Lee, J.6
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