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Volumn 5, Issue FEB, 2015, Pages

History, chance and selection during phenotypic and genomic experimental evolution: Replaying the tape of life at different levels

Author keywords

Adaptation; Drosophila subobscura; Genetic background; Genomic convergence; Historical constraints; Phenotypic convergence

Indexed keywords

ARTICLE; BIODIVERSITY; CONVERGENT EVOLUTION; DROSOPHILA; EVOLUTION; EVOLUTIONARY ADAPTATION; EVOLUTIONARY DEVELOPMENTAL BIOLOGY; GENETIC ASSOCIATION; GENOME; MUTATION; NATURAL SELECTION; NONHUMAN; PARALLEL EVOLUTION; PHENOTYPE;

EID: 84923552403     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2015.00071     Document Type: Article
Times cited : (18)

References (38)
  • 1
    • 37549017103 scopus 로고    scopus 로고
    • Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?
    • Arendt, J., and Reznick, D. (2008). Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? Trends in Ecology & Evolution 23(1), 26-32. doi:10.1016/j.tree.2007.09.011
    • (2008) Trends in Ecology & Evolution , vol.23 , Issue.1 , pp. 26-32
    • Arendt, J.1    Reznick, D.2
  • 2
    • 84897858777 scopus 로고    scopus 로고
    • The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms
    • Baldwin-Brown, J. G., Long, A. D., & Thornton, K. R. (2014). The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms. Molecular Biology and Evolution, 31(4), 1040-55. doi:10.1093/molbev/msu048
    • (2014) Molecular Biology and Evolution , vol.31 , Issue.4 , pp. 1040-1055
    • Baldwin-Brown, J.G.1    Long, A.D.2    Thornton, K.R.3
  • 3
    • 84888001845 scopus 로고    scopus 로고
    • Genome dynamics during experimental evolution
    • Barrick, J. E., & Lenski, R. E. (2013). Genome dynamics during experimental evolution. Nature Reviews. Genetics, 14(12), 827-39. doi:10.1038/nrg3564.
    • (2013) Nature Reviews. Genetics , vol.14 , Issue.12 , pp. 827-839
    • Barrick, J.E.1    Lenski, R.E.2
  • 4
    • 84873977937 scopus 로고    scopus 로고
    • Genotypic but not phenotypic historical contingency revealed by viral experimental evolution.
    • Bedhomme, S., Lafforgue, G., and Elena, S. F. (2013). Genotypic but not phenotypic historical contingency revealed by viral experimental evolution. BMC Evolutionary Biology 13:46. doi:10.1186/1471-2148-13-46.
    • (2013) BMC Evolutionary Biology , vol.13 , pp. 46
    • Bedhomme, S.1    Lafforgue, G.2    Elena, S.F.3
  • 5
  • 6
    • 84869131230 scopus 로고    scopus 로고
    • How does adaptation sweep through the genome? Insights from long term selection experiments
    • Burke, M. K. (2012). How does adaptation sweep through the genome? Insights from long term selection experiments. Proc. R. Soc. B 279(1749), 5029-38. doi:10.1098/rspb.2012.0799.
    • (2012) Proc. R. Soc. B , vol.279 , Issue.1749 , pp. 5029-5038
    • Burke, M.K.1
  • 7
    • 77957346489 scopus 로고    scopus 로고
    • Genome-wide analysis of a long-term evolution experiment with Drosophila
    • Burke, M. K., Dunham, J. P., Shahrestani, P., Thornton, K. R., Rose, M. R., and Long, A. D. (2010). Genome-wide analysis of a long-term evolution experiment with Drosophila. Nature 467(7315), 587-90. doi:10.1038/nature09352.
    • (2010) Nature , vol.467 , Issue.7315 , pp. 587-590
    • Burke, M.K.1    Dunham, J.P.2    Shahrestani, P.3    Thornton, K.R.4    Rose, M.R.5    Long, A.D.6
  • 8
    • 84867554607 scopus 로고    scopus 로고
    • What paths do advantageous alleles take during short-term evolutionary change?
    • Burke, M. K., and Long, A. D. (2012). What paths do advantageous alleles take during short-term evolutionary change? Molecular Ecology 21(20), 4913-6. doi: 10.1111/j.1365-294X.2012.05745.x.
    • (2012) Molecular Ecology , vol.21 , Issue.20 , pp. 4913-4916
    • Burke, M.K.1    Long, A.D.2
  • 10
    • 84902775598 scopus 로고    scopus 로고
    • Empirical fitness landscapes and the predictability of evolution Nature reviews.
    • De Visser, J. A. G. M., and Krug, J. (2014). Empirical fitness landscapes and the predictability of evolution. Nature reviews. Genetics 15(7), 480-90. doi:10.1038/nrg3744.
    • (2014) Genetics , vol.15 , Issue.7 , pp. 480-490
    • De Visser, J.A.G.M.1    Krug, J.2
  • 11
    • 84860663163 scopus 로고    scopus 로고
    • Evolutionary insight from whole-genome sequencing of experimentally evolved microbes
    • Dettman, J. R., Rodrigue, N., Melnyk, A. H., Wong, A., Bailey, S. F., and Kassen, R. (2012). Evolutionary insight from whole-genome sequencing of experimentally evolved microbes. Molecular Ecology 21(9), 2058-77. doi:10.1111/j.1365-294X.2012.05484.x.
    • (2012) Molecular Ecology , vol.21 , Issue.9 , pp. 2058-2077
    • Dettman, J.R.1    Rodrigue, N.2    Melnyk, A.H.3    Wong, A.4    Bailey, S.F.5    Kassen, R.6
  • 12
    • 84888274008 scopus 로고    scopus 로고
    • Genome sequencing and population genomics in non-model organisms
    • Ellegren, H. (2014). Genome sequencing and population genomics in non-model organisms. Trends in Ecology & Evolution 29(1), 51-63. doi:10.1016/j.tree.2013.09.008.
    • (2014) Trends in Ecology & Evolution , vol.29 , Issue.1 , pp. 51-63
    • Ellegren, H.1
  • 13
    • 79956051868 scopus 로고    scopus 로고
    • Adaptation in the age of ecological genomics: insights from parallelism and convergence
    • Elmer, K. R., and Meyer, A. (2011). Adaptation in the age of ecological genomics: insights from parallelism and convergence. Trends in Ecology & Evolution 26(6), 298-306. doi:10.1016/j.tree.2011.02.008.
    • (2011) Trends in Ecology & Evolution , vol.26 , Issue.6 , pp. 298-306
    • Elmer, K.R.1    Meyer, A.2
  • 15
    • 84900443378 scopus 로고    scopus 로고
    • Laboratory selection quickly erases historical differentiation.
    • Fragata, I., Simões, P., Lopes-Cunha, M., Lima, M., Kellen, B., Bárbaro, M., et al. (2014a). Laboratory selection quickly erases historical differentiation. PLoS ONE 9(5):e96227. doi:10.1371/journal.pone.0096227.
    • (2014) PLoS ONE , vol.9 , Issue.5
    • Fragata, I.1    Simões, P.2    Lopes-Cunha, M.3    Lima, M.4    Kellen, B.5    Bárbaro, M.6
  • 17
    • 84870434206 scopus 로고    scopus 로고
    • 'High-Dimensional Fitness Landscapes and Speciation'.
    • eds. M. Pigliucci and G. Muller (Cambridge, MA: MIT Press)
    • Gavrilets, S. (2010). 'High-Dimensional Fitness Landscapes and Speciation'. In Evolution: the extended synthesis eds. M. Pigliucci and G. Muller (Cambridge, MA: MIT Press), 45-80.
    • (2010) Evolution: the extended synthesis , pp. 45-80
    • Gavrilets, S.1
  • 19
    • 58549086375 scopus 로고    scopus 로고
    • Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?
    • Hoffmann, A. A, and Rieseberg, L. H. (2008). Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation? Annual Review of Ecology, Evolution, and Systematics 39, 21-42. doi:10.1146/annurev.ecolsys.39.110707.173532.
    • (2008) Annual Review of Ecology, Evolution, and Systematics , vol.39 , pp. 21-42
    • Hoffmann, A.A.1    Rieseberg, L.H.2
  • 21
    • 77957889544 scopus 로고    scopus 로고
    • How and why chromosome inversions evolve.
    • Kirkpatrick, M. (2010). How and why chromosome inversions evolve. PLoS Biology 8(9): e1000501. doi:10.1371/journal.pbio.1000501
    • (2010) PLoS Biology , vol.8 , Issue.9
    • Kirkpatrick, M.1
  • 23
    • 84876090839 scopus 로고    scopus 로고
    • Replaying the tape of life: quantification of the predictability of evolution.
    • Lobkovsky, A. E., and Koonin, E. V. (2012). Replaying the tape of life: quantification of the predictability of evolution. Frontiers in Genetics 3:246. doi:10.3389/fgene.2012.00246.
    • (2012) Frontiers in Genetics , vol.3 , pp. 246
    • Lobkovsky, A.E.1    Koonin, E.V.2
  • 24
    • 84868698988 scopus 로고    scopus 로고
    • Strengths and weaknesses of experimental evolution
    • Magalhães, S., and Matos, M. (2012). Strengths and weaknesses of experimental evolution. Trends in Ecology & Evolution 27(12), 649-50. doi:10.1016/j.tree.2012.08.004.
    • (2012) Trends in Ecology & Evolution , vol.27 , Issue.12 , pp. 649-650
    • Magalhães, S.1    Matos, M.2
  • 25
    • 13144257707 scopus 로고    scopus 로고
    • The genetic theory of adaptation: a brief history
    • Orr, H. A. (2005). The genetic theory of adaptation: a brief history. Nature Reviews Genetics 6(2), 119-27. doi:10.1038/nrg1523.
    • (2005) Nature Reviews Genetics , vol.6 , Issue.2 , pp. 119-127
    • Orr, H.A.1
  • 27
    • 84869215946 scopus 로고    scopus 로고
    • From nature to the laboratory: the impact of founder effects on adaptation
    • Santos, J, Pascual, M., Simões, P., Fragata, I., Lima, M., Kellen, B., et al. (2012). From nature to the laboratory: the impact of founder effects on adaptation. Journal of Evolutionary Biology 25(12), 2607-22. doi:10.1111/jeb.12008.
    • (2012) Journal of Evolutionary Biology , vol.25 , Issue.12 , pp. 2607-2622
    • Santos, J.1    Pascual, M.2    Simões, P.3    Fragata, I.4    Lima, M.5    Kellen, B.6
  • 28
    • 84883793625 scopus 로고    scopus 로고
    • Fast evolutionary genetic differentiation during experimental colonizations
    • Santos, Josiane, Pascual, M., Simões, P., Fragata, I., Rose, M. R., and Matos, M. (2013). Fast evolutionary genetic differentiation during experimental colonizations. Journal of Genetics 92(2), 183-94. doi:10.1007/s12041-013-0239-x.
    • (2013) Journal of Genetics , vol.92 , Issue.2 , pp. 183-194
    • Santos Josiane Pascual, M.1    Simões, P.2    Fragata, I.3    Rose, M.R.4    Matos, M.5
  • 29
    • 84928214396 scopus 로고    scopus 로고
    • Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation.
    • Schlötterer, C., Kofler, R., Versace, E., Tobler, R., & Franssen, S. U. (2014). Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation. Heredity, 1-10. doi:10.1038/hdy.2014.86.
    • (2014) Heredity , pp. 1-10
    • Schlötterer, C.1    Kofler, R.2    Versace, E.3    Tobler, R.4    Franssen, S.U.5
  • 30
    • 40749118949 scopus 로고    scopus 로고
    • Evolutionary dynamics of molecular markers during local adaptation: a case study in Drosophila subobscura.
    • Simões, P., Pascual, M., Santos, J., Rose, M. R., and Matos, M. (2008). Evolutionary dynamics of molecular markers during local adaptation: a case study in Drosophila subobscura. BMC Evolutionary Biology 8(1):66. doi:10.1186/1471-2148-8-66.
    • (2008) BMC Evolutionary Biology , vol.8 , Issue.1 , pp. 66
    • Simões, P.1    Pascual, M.2    Santos, J.3    Rose, M.R.4    Matos, M.5
  • 31
    • 77957589706 scopus 로고    scopus 로고
    • Divergent evolution of molecular markers during laboratory adaptation in Drosophila subobscura
    • Simões, P., Pascual, M., Coelho, M. M., and Matos, M. (2010). Divergent evolution of molecular markers during laboratory adaptation in Drosophila subobscura. Genetica 138(9-10), 999-1009. doi:10.1007/s10709-010-9486-4.
    • (2010) Genetica , vol.138 , Issue.9-10 , pp. 999-1009
    • Simões, P.1    Pascual, M.2    Coelho, M.M.3    Matos, M.4
  • 32
    • 47749138616 scopus 로고    scopus 로고
    • How repeatable is adaptive evolution? The role of geographical origin and founder effects in laboratory adaptation.
    • Simões, P., Santos, J., Fragata, I., Mueller, L. D., Rose, M. R., and Matos, M. (2008a). How repeatable is adaptive evolution?. The role of geographical origin and founder effects in laboratory adaptation. Evolution 62(8), 1817-29. doi:10.1111/j.1558-5646.2008.00423.x.
    • (2008) Evolution , vol.62 , Issue.8 , pp. 1817-1829
    • Simões, P.1    Santos, J.2    Fragata, I.3    Mueller, L.D.4    Rose, M.R.5    Matos, M.6
  • 33
    • 84896734951 scopus 로고    scopus 로고
    • Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast
    • Spor, A., Kvitek, D. J., Nidelet, T., Martin, J., Legrand, J., Dillmann, C., et al. (2014). Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast. Evolution 68(3), 772-90. doi:10.1111/evo.12302.
    • (2014) Evolution , vol.68 , Issue.3 , pp. 772-790
    • Spor, A.1    Kvitek, D.J.2    Nidelet, T.3    Martin, J.4    Legrand, J.5    Dillmann, C.6
  • 35
    • 84886102011 scopus 로고    scopus 로고
    • The genetic causes of convergent evolution
    • Stern, D. L. (2013). The genetic causes of convergent evolution. Nature Reviews Genetics 14(11), 751-64. doi:10.1038/nrg3483.
    • (2013) Nature Reviews Genetics , vol.14 , Issue.11 , pp. 751-764
    • Stern, D.L.1
  • 37
    • 0034707056 scopus 로고    scopus 로고
    • Variation in the reversibility of evolution
    • Teotónio, H., and Rose, M. R. (2000). Variation in the reversibility of evolution. Nature 408(6811), 463-6. doi:10.1038/35044070.
    • (2000) Nature , vol.408 , Issue.6811 , pp. 463-466
    • Teotónio, H.1    Rose, M.R.2
  • 38
    • 59149100147 scopus 로고    scopus 로고
    • Experimental evolution reveals natural selection on standing genetic variation
    • Teotónio, H., Chelo, I. M., Bradic, M., Rose, M. R., and Long, A. D. (2009). Experimental evolution reveals natural selection on standing genetic variation. Nature Genetics 41(2), 251-7. doi:10.1038/ng.289.
    • (2009) Nature Genetics , vol.41 , Issue.2 , pp. 251-257
    • Teotónio, H.1    Chelo, I.M.2    Bradic, M.3    Rose, M.R.4    Long, A.D.5


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