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Volumn 108, Issue 4, 2015, Pages 810-820

Simulating the entropic collapse of coarse-grained chromosomes

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 84923248039     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2014.11.3487     Document Type: Article
Times cited : (44)

References (84)
  • 1
    • 57749209893 scopus 로고    scopus 로고
    • The major architects of chromatin: Architectural proteins in bacteria, archaea and eukaryotes
    • M.S. Luijsterburg, and M.F. White R.T. Dame The major architects of chromatin: architectural proteins in bacteria, archaea and eukaryotes Crit. Rev. Biochem. Mol. Biol. 43 2008 393 418
    • (2008) Crit. Rev. Biochem. Mol. Biol. , vol.43 , pp. 393-418
    • Luijsterburg, M.S.1    White, M.F.2    Dame, R.T.3
  • 2
    • 33747615506 scopus 로고    scopus 로고
    • Entropy-driven spatial organization of highly confined polymers: Lessons for the bacterial chromosome
    • S. Jun, and B. Mulder Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome Proc. Natl. Acad. Sci. USA 103 2006 12388 12393
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 12388-12393
    • Jun, S.1    Mulder, B.2
  • 3
    • 34848860442 scopus 로고    scopus 로고
    • Time scale of entropic segregation of flexible polymers in confinement: Implications for chromosome segregation in filamentous bacteria
    • A. Arnold, and S. Jun Time scale of entropic segregation of flexible polymers in confinement: implications for chromosome segregation in filamentous bacteria Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 76 2007 031901
    • (2007) Phys. Rev. e Stat. Nonlin. Soft Matter Phys. , vol.76 , pp. 031901
    • Arnold, A.1    Jun, S.2
  • 4
    • 34447626090 scopus 로고    scopus 로고
    • Chromosome segregation in Escherichia coli division: A free energy-driven string model
    • J. Fan, K. Tuncay, and P.J. Ortoleva Chromosome segregation in Escherichia coli division: a free energy-driven string model Comput. Biol. Chem. 31 2007 257 264
    • (2007) Comput. Biol. Chem. , vol.31 , pp. 257-264
    • Fan, J.1    Tuncay, K.2    Ortoleva, P.J.3
  • 5
    • 77954719357 scopus 로고    scopus 로고
    • Entropy as the driver of chromosome segregation
    • S. Jun, and A. Wright Entropy as the driver of chromosome segregation Nat. Rev. Microbiol. 8 2010 600 607
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 600-607
    • Jun, S.1    Wright, A.2
  • 6
    • 84859961094 scopus 로고    scopus 로고
    • Polymer physics for understanding bacterial chromosomes
    • R.T. Dame, C.J. Dorman, Springer Dordrecht, The Netherlands
    • S. Jun Polymer physics for understanding bacterial chromosomes R.T. Dame, C.J. Dorman, Bacterial Chromatin 2010 Springer Dordrecht, The Netherlands 97 116
    • (2010) Bacterial Chromatin , pp. 97-116
    • Jun, S.1
  • 7
    • 84863012682 scopus 로고    scopus 로고
    • Ring polymers as model bacterial chromosomes: Confinement, chain topology, single chain statistics, and how they interact
    • Y. Jung, and C. Jeon B.-Y. Ha Ring polymers as model bacterial chromosomes: confinement, chain topology, single chain statistics, and how they interact Soft Matter 8 2012 2095 2102
    • (2012) Soft Matter , vol.8 , pp. 2095-2102
    • Jung, Y.1    Jeon, C.2    Ha, B.-Y.3
  • 8
    • 84859579676 scopus 로고    scopus 로고
    • Intrachain ordering and segregation of polymers under confinement
    • Y. Jung, and J. Kim B.-Y. Ha Intrachain ordering and segregation of polymers under confinement Macromolecules 45 2012 3256 3262
    • (2012) Macromolecules , vol.45 , pp. 3256-3262
    • Jung, Y.1    Kim, J.2    Ha, B.-Y.3
  • 9
    • 84904430498 scopus 로고    scopus 로고
    • Induction of entropic segregation: The first step is the hardest
    • E. Minina, and A. Arnold Induction of entropic segregation: the first step is the hardest Soft Matter. 10 2014 5836 5841
    • (2014) Soft Matter. , vol.10 , pp. 5836-5841
    • Minina, E.1    Arnold, A.2
  • 10
    • 0028940740 scopus 로고
    • Phase separation in cytoplasm, due to macromolecular crowding, is the basis for microcompartmentation
    • H. Walter, and D.E. Brooks Phase separation in cytoplasm, due to macromolecular crowding, is the basis for microcompartmentation FEBS Lett. 361 1995 135 139
    • (1995) FEBS Lett. , vol.361 , pp. 135-139
    • Walter, H.1    Brooks, D.E.2
  • 11
    • 0030605841 scopus 로고    scopus 로고
    • Macromolecular crowding and the mandatory condensation of DNA in bacteria
    • S.B. Zimmerman, and L.D. Murphy Macromolecular crowding and the mandatory condensation of DNA in bacteria FEBS Lett. 390 1996 245 248
    • (1996) FEBS Lett. , vol.390 , pp. 245-248
    • Zimmerman, S.B.1    Murphy, L.D.2
  • 12
    • 0015100570 scopus 로고
    • A transition to a compact form of DNA in polymer solutions
    • L.S. Lerman A transition to a compact form of DNA in polymer solutions Proc. Natl. Acad. Sci. USA 68 1971 1886 1890
    • (1971) Proc. Natl. Acad. Sci. USA , vol.68 , pp. 1886-1890
    • Lerman, L.S.1
  • 13
    • 84985735713 scopus 로고
    • Excluded volume as a determinant of macromolecular structure and reactivity
    • A.P. Minton Excluded volume as a determinant of macromolecular structure and reactivity Biopolymers 20 1981 2093 2120
    • (1981) Biopolymers , vol.20 , pp. 2093-2120
    • Minton, A.P.1
  • 14
    • 0020668187 scopus 로고
    • The effect of volume occupancy upon the thermodynamic activity of proteins: Some biochemical consequences
    • A.P. Minton The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences Mol. Cell. Biochem. 55 1983 119 140
    • (1983) Mol. Cell. Biochem. , vol.55 , pp. 119-140
    • Minton, A.P.1
  • 15
    • 30744464564 scopus 로고    scopus 로고
    • Elongation/compaction of giant DNA caused by depletion interaction with a flexible polymer
    • M. Kojima, K. Kubo, and K. Yoshikawa Elongation/compaction of giant DNA caused by depletion interaction with a flexible polymer J. Chem. Phys. 124 2006 024902
    • (2006) J. Chem. Phys. , vol.124 , pp. 024902
    • Kojima, M.1    Kubo, K.2    Yoshikawa, K.3
  • 16
    • 0026344818 scopus 로고
    • Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli
    • S.B. Zimmerman, and S.O. Trach Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli J. Mol. Biol. 222 1991 599 620
    • (1991) J. Mol. Biol. , vol.222 , pp. 599-620
    • Zimmerman, S.B.1    Trach, S.O.2
  • 17
    • 0002973783 scopus 로고    scopus 로고
    • Structure of DNA within the bacterial cell: Physics and physiology
    • R.L. Charlebois, American Society for Microbiology Washington, DC
    • C.L. Woldringh, and T. Odijk Structure of DNA within the bacterial cell: physics and physiology R.L. Charlebois, Organization of the Prokaryotic Genome, Chapter 10 1999 American Society for Microbiology Washington, DC 171 187
    • (1999) Organization of the Prokaryotic Genome, Chapter 10 , pp. 171-187
    • Woldringh, C.L.1    Odijk, T.2
  • 18
    • 0035782861 scopus 로고    scopus 로고
    • Polymer-mediated compaction and internal dynamics of isolated Escherichia coli nucleoids
    • S. Cunha, C.L. Woldringh, and T. Odijk Polymer-mediated compaction and internal dynamics of isolated Escherichia coli nucleoids J. Struct. Biol. 136 2001 53 66
    • (2001) J. Struct. Biol. , vol.136 , pp. 53-66
    • Cunha, S.1    Woldringh, C.L.2    Odijk, T.3
  • 19
    • 34249694800 scopus 로고    scopus 로고
    • Experimental evidence for the influence of molecular crowding on nuclear architecture
    • K. Richter, M. Nessling, and P. Lichter Experimental evidence for the influence of molecular crowding on nuclear architecture J. Cell Sci. 120 2007 1673 1680
    • (2007) J. Cell Sci. , vol.120 , pp. 1673-1680
    • Richter, K.1    Nessling, M.2    Lichter, P.3
  • 20
    • 45849101224 scopus 로고    scopus 로고
    • Self-association of polynucleosome chains by macromolecular crowding
    • R. Hancock Self-association of polynucleosome chains by macromolecular crowding Eur. Biophys. J. 37 2008 1059 1064
    • (2008) Eur. Biophys. J. , vol.37 , pp. 1059-1064
    • Hancock, R.1
  • 21
    • 84867042373 scopus 로고    scopus 로고
    • Physical manipulation of the Escherichia coli chromosome reveals its soft nature
    • J. Pelletier, and K. Halvorsen S. Jun Physical manipulation of the Escherichia coli chromosome reveals its soft nature Proc. Natl. Acad. Sci. USA 109 2012 E2649 E2656
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. E2649-E2656
    • Pelletier, J.1    Halvorsen, K.2    Jun, S.3
  • 22
    • 0032514107 scopus 로고    scopus 로고
    • Osmotic compaction of supercoiled DNA into a bacterial nucleoid
    • T. Odijk Osmotic compaction of supercoiled DNA into a bacterial nucleoid Biophys. Chem. 73 1998 23 29
    • (1998) Biophys. Chem. , vol.73 , pp. 23-29
    • Odijk, T.1
  • 23
    • 0000618056 scopus 로고    scopus 로고
    • Large discrete transition in a single DNA molecule appears continuous in the ensemble
    • K. Yoshikawa, and M. Takahashi A.R. Khokhlov Large discrete transition in a single DNA molecule appears continuous in the ensemble Phys. Rev. Lett. 76 1996 3029 3031
    • (1996) Phys. Rev. Lett. , vol.76 , pp. 3029-3031
    • Yoshikawa, K.1    Takahashi, M.2    Khokhlov, A.R.3
  • 24
    • 31344453142 scopus 로고    scopus 로고
    • Cooperative transitions of isolated Escherichia coli nucleoids: Implications for the nucleoid as a cellular phase
    • S.B. Zimmerman Cooperative transitions of isolated Escherichia coli nucleoids: implications for the nucleoid as a cellular phase J. Struct. Biol. 153 2006 160 175
    • (2006) J. Struct. Biol. , vol.153 , pp. 160-175
    • Zimmerman, S.B.1
  • 25
    • 22444439358 scopus 로고    scopus 로고
    • A-tract clusters may facilitate DNA packaging in bacterial nucleoid
    • M.Y. Tolstorukov, and K.M. Virnik V.B. Zhurkin A-tract clusters may facilitate DNA packaging in bacterial nucleoid Nucleic Acids Res. 33 2005 3907 3918
    • (2005) Nucleic Acids Res. , vol.33 , pp. 3907-3918
    • Tolstorukov, M.Y.1    Virnik, K.M.2    Zhurkin, V.B.3
  • 26
    • 33750531252 scopus 로고    scopus 로고
    • Chromosome organization and segregation in bacteria
    • M. Thanbichler, and L. Shapiro Chromosome organization and segregation in bacteria J. Struct. Biol. 156 2006 292 303
    • (2006) J. Struct. Biol. , vol.156 , pp. 292-303
    • Thanbichler, M.1    Shapiro, L.2
  • 27
    • 33750527566 scopus 로고    scopus 로고
    • The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: A molecular perspective
    • M.S. Luijsterburg, and M.C. Noom R.T. Dame The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective J. Struct. Biol. 156 2006 262 272
    • (2006) J. Struct. Biol. , vol.156 , pp. 262-272
    • Luijsterburg, M.S.1    Noom, M.C.2    Dame, R.T.3
  • 28
    • 20544465434 scopus 로고    scopus 로고
    • SMC proteins and chromosome mechanics: From bacteria to humans
    • T. Hirano SMC proteins and chromosome mechanics: from bacteria to humans Philos. Trans. R. Soc. Lond. B Biol. Sci. 360 2005 507 514
    • (2005) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.360 , pp. 507-514
    • Hirano, T.1
  • 29
    • 33646177549 scopus 로고    scopus 로고
    • At the heart of the chromosome: SMC proteins in action
    • T. Hirano At the heart of the chromosome: SMC proteins in action Nat. Rev. Mol. Cell Biol. 7 2006 311 322
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 311-322
    • Hirano, T.1
  • 30
    • 3042681300 scopus 로고    scopus 로고
    • Information content and complexity in the high-order organization of DNA
    • A. Minsky Information content and complexity in the high-order organization of DNA Annu. Rev. Biophys. Biomol. Struct. 33 2004 317 342
    • (2004) Annu. Rev. Biophys. Biomol. Struct. , vol.33 , pp. 317-342
    • Minsky, A.1
  • 31
    • 34247517469 scopus 로고    scopus 로고
    • DNA-protein interactions and bacterial chromosome architecture
    • J. Stavans, and A. Oppenheim DNA-protein interactions and bacterial chromosome architecture Phys. Biol. 3 2006 R1 R10
    • (2006) Phys. Biol. , vol.3 , pp. R1-R10
    • Stavans, J.1    Oppenheim, A.2
  • 32
    • 3142774839 scopus 로고    scopus 로고
    • Topological domain structure of the Escherichia coli chromosome
    • L. Postow, and C.D. Hardy N.R. Cozzarelli Topological domain structure of the Escherichia coli chromosome Genes Dev. 18 2004 1766 1779
    • (2004) Genes Dev. , vol.18 , pp. 1766-1779
    • Postow, L.1    Hardy, C.D.2    Cozzarelli, N.R.3
  • 33
    • 33750504444 scopus 로고    scopus 로고
    • Structural and physical aspects of bacterial chromosome segregation
    • C.L. Woldringh, and N. Nanninga Structural and physical aspects of bacterial chromosome segregation J. Struct. Biol. 156 2006 273 283
    • (2006) J. Struct. Biol. , vol.156 , pp. 273-283
    • Woldringh, C.L.1    Nanninga, N.2
  • 34
    • 0035119398 scopus 로고    scopus 로고
    • SMC proteins in bacteria: Condensation motors for chromosome segregation?
    • P.L. Graumann SMC proteins in bacteria: condensation motors for chromosome segregation? Biochimie 83 2001 53 59
    • (2001) Biochimie , vol.83 , pp. 53-59
    • Graumann, P.L.1
  • 35
    • 18444369954 scopus 로고    scopus 로고
    • The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin
    • R.T. Dame The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin Mol. Microbiol. 56 2005 858 870
    • (2005) Mol. Microbiol. , vol.56 , pp. 858-870
    • Dame, R.T.1
  • 36
    • 0021702552 scopus 로고
    • Phase separation between nucleoid and cytoplasm in Escherichia coli as defined by immersive refractometry
    • J.A. Valkenburg, and C.L. Woldringh Phase separation between nucleoid and cytoplasm in Escherichia coli as defined by immersive refractometry J. Bacteriol. 160 1984 1151 1157
    • (1984) J. Bacteriol. , vol.160 , pp. 1151-1157
    • Valkenburg, J.A.1    Woldringh, C.L.2
  • 37
    • 84864379357 scopus 로고    scopus 로고
    • Nucleoid structure and segregation
    • R.T. Dame, C.J. Dorman, Springer Dordrecht, The Netherlands
    • C.L. Woldringh Nucleoid structure and segregation R.T. Dame, C.J. Dorman, Bacterial Chromatin 2010 Springer Dordrecht, The Netherlands 71 96
    • (2010) Bacterial Chromatin , pp. 71-96
    • Woldringh, C.L.1
  • 38
    • 84923262147 scopus 로고    scopus 로고
    • Coarse-grained molecular dynamics simulations of depletion-induced interactions for soft matter systems
    • T.N. Shendruk, and M. Bertrand H.W. de Haan Coarse-grained molecular dynamics simulations of depletion-induced interactions for soft matter systems J. Chem. Phys. 141 2014 244910
    • (2014) J. Chem. Phys. , vol.141 , pp. 244910
    • Shendruk, T.N.1    Bertrand, M.2    De Haan, H.W.3
  • 39
    • 67249108760 scopus 로고    scopus 로고
    • Depletion interaction of two spheres full density functional theory vs. Morphometric results
    • M. Oettel, and H. Hansen-Goos R. Roth Depletion interaction of two spheres full density functional theory vs. morphometric results Europhys. Lett. 85 2009 36003
    • (2009) Europhys. Lett. , vol.85 , pp. 36003
    • Oettel, M.1    Hansen-Goos, H.2    Roth, R.3
  • 40
    • 67650931275 scopus 로고    scopus 로고
    • Hard-sphere fluids in annular wedges: Density distributions and depletion potentials
    • V. Boţan, and F. Pesth M. Oettel Hard-sphere fluids in annular wedges: density distributions and depletion potentials Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 79 2009 061402
    • (2009) Phys. Rev. e Stat. Nonlin. Soft Matter Phys. , vol.79 , pp. 061402
    • Boţan, V.1    Pesth, F.2    Oettel, M.3
  • 41
    • 84855264157 scopus 로고    scopus 로고
    • Depletion potentials in highly size-asymmetric binary hard-sphere mixtures: Comparison of simulation results with theory
    • D.J. Ashton, and N.B. Wilding R. Evans Depletion potentials in highly size-asymmetric binary hard-sphere mixtures: comparison of simulation results with theory Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 84 2011 061136
    • (2011) Phys. Rev. e Stat. Nonlin. Soft Matter Phys. , vol.84 , pp. 061136
    • Ashton, D.J.1    Wilding, N.B.2    Evans, R.3
  • 42
    • 4244202584 scopus 로고
    • Free-energy model for the inhomogeneous hard-sphere fluid mixture and density-functional theory of freezing
    • Y. Rosenfeld Free-energy model for the inhomogeneous hard-sphere fluid mixture and density-functional theory of freezing Phys. Rev. Lett. 63 1989 980 983
    • (1989) Phys. Rev. Lett. , vol.63 , pp. 980-983
    • Rosenfeld, Y.1
  • 43
    • 34147130136 scopus 로고    scopus 로고
    • Internal structure and dynamics of isolated Escherichia coli nucleoids assessed by fluorescence correlation spectroscopy
    • T. Romantsov, I. Fishov, and O. Krichevsky Internal structure and dynamics of isolated Escherichia coli nucleoids assessed by fluorescence correlation spectroscopy Biophys. J. 92 2007 2875 2884
    • (2007) Biophys. J. , vol.92 , pp. 2875-2884
    • Romantsov, T.1    Fishov, I.2    Krichevsky, O.3
  • 44
    • 0036050398 scopus 로고    scopus 로고
    • The role of co-transcriptional translation and protein translocation (transertion) in bacterial chromosome segregation
    • C.L. Woldringh The role of co-transcriptional translation and protein translocation (transertion) in bacterial chromosome segregation Mol. Microbiol. 45 2002 17 29
    • (2002) Mol. Microbiol. , vol.45 , pp. 17-29
    • Woldringh, C.L.1
  • 45
    • 65949088363 scopus 로고    scopus 로고
    • Modeling the separation of macromolecules: A review of current computer simulation methods
    • G.W. Slater, and C. Holm L. Zhan Modeling the separation of macromolecules: a review of current computer simulation methods Electrophoresis 30 2009 792 818
    • (2009) Electrophoresis , vol.30 , pp. 792-818
    • Slater, G.W.1    Holm, C.2    Zhan, L.3
  • 47
    • 79960325276 scopus 로고    scopus 로고
    • Entropy-based mechanism of ribosome-Nucleoid segregation in E. Coli cells
    • J. Mondal, and B.P. Bratton J.C. Weisshaar Entropy-based mechanism of ribosome-nucleoid segregation in E. coli cells Biophys. J. 100 2011 2605 2613
    • (2011) Biophys. J. , vol.100 , pp. 2605-2613
    • Mondal, J.1    Bratton, B.P.2    Weisshaar, J.C.3
  • 51
    • 0347024191 scopus 로고    scopus 로고
    • On pair additivity of the depletion force
    • D. Zhu, W. Li, and H.R. Ma On pair additivity of the depletion force J. Phys. Condens. Matter 15 2003 8281
    • (2003) J. Phys. Condens. Matter , vol.15 , pp. 8281
    • Zhu, D.1    Li, W.2    Ma, H.R.3
  • 52
    • 84898975417 scopus 로고    scopus 로고
    • Quantifying the effects of neglecting many-body interactions in coarse-grained models of complex fluids
    • D.J. Ashton, and N.B. Wilding Quantifying the effects of neglecting many-body interactions in coarse-grained models of complex fluids Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 89 2014 031301
    • (2014) Phys. Rev. e Stat. Nonlin. Soft Matter Phys. , vol.89 , pp. 031301
    • Ashton, D.J.1    Wilding, N.B.2
  • 55
    • 0035792981 scopus 로고    scopus 로고
    • The depletion potential in non-additive hard-sphere mixtures
    • R. Roth, and R. Evans The depletion potential in non-additive hard-sphere mixtures Europhys. Lett. 53 2001 271
    • (2001) Europhys. Lett. , vol.53 , pp. 271
    • Roth, R.1    Evans, R.2
  • 56
    • 0037439646 scopus 로고    scopus 로고
    • Geometry-based density functional theory: An overview
    • M. Schmidt Geometry-based density functional theory: an overview J. Phys. Condens. Matter 15 2003 S101
    • (2003) J. Phys. Condens. Matter , vol.15 , pp. S101
    • Schmidt, M.1
  • 58
    • 75649134244 scopus 로고    scopus 로고
    • Fundamental measure theory for hard-sphere mixtures: A review
    • R. Roth Fundamental measure theory for hard-sphere mixtures: a review J. Phys. Condens. Matter 22 2010 063102
    • (2010) J. Phys. Condens. Matter , vol.22 , pp. 063102
    • Roth, R.1
  • 59
    • 37649031569 scopus 로고    scopus 로고
    • Depletion force between two large spheres suspended in a bath of small spheres: Onset of the Derjaguin limit
    • M. Oettel Depletion force between two large spheres suspended in a bath of small spheres: onset of the Derjaguin limit Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 69 2004 041404
    • (2004) Phys. Rev. e Stat. Nonlin. Soft Matter Phys. , vol.69 , pp. 041404
    • Oettel, M.1
  • 60
    • 42749107502 scopus 로고    scopus 로고
    • Effect of repulsive and attractive interactions on depletion forces in colloidal suspensions: A density functional theory treatment
    • S.A. Egorov Effect of repulsive and attractive interactions on depletion forces in colloidal suspensions: a density functional theory treatment Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 70 2004 031402
    • (2004) Phys. Rev. e Stat. Nonlin. Soft Matter Phys. , vol.70 , pp. 031402
    • Egorov, S.A.1
  • 61
    • 33748278176 scopus 로고    scopus 로고
    • Depletion potential between large spheres immersed in a multicomponent mixture of small spheres
    • R. Roth, and M. Kinoshita Depletion potential between large spheres immersed in a multicomponent mixture of small spheres J. Chem. Phys. 125 2006 084910
    • (2006) J. Chem. Phys. , vol.125 , pp. 084910
    • Roth, R.1    Kinoshita, M.2
  • 63
    • 33846340430 scopus 로고    scopus 로고
    • Hard-sphere fluid adsorbed in an annular wedge: The depletion force of hard-body colloidal physics
    • A.R. Herring, and J.R. Henderson Hard-sphere fluid adsorbed in an annular wedge: the depletion force of hard-body colloidal physics Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 75 2007 011402
    • (2007) Phys. Rev. e Stat. Nonlin. Soft Matter Phys. , vol.75 , pp. 011402
    • Herring, A.R.1    Henderson, J.R.2
  • 64
    • 33645999511 scopus 로고
    • On interaction between two bodies immersed in a solution of macromolecules
    • S. Asakura, and F. Oosawa On interaction between two bodies immersed in a solution of macromolecules J. Chem. Phys. 22 1954 1255 1256
    • (1954) J. Chem. Phys. , vol.22 , pp. 1255-1256
    • Asakura, S.1    Oosawa, F.2
  • 66
    • 3142770511 scopus 로고    scopus 로고
    • Phase diagram of the adhesive hard sphere fluid
    • M.A. Miller, and D. Frenkel Phase diagram of the adhesive hard sphere fluid J. Chem. Phys. 121 2004 535 545
    • (2004) J. Chem. Phys. , vol.121 , pp. 535-545
    • Miller, M.A.1    Frenkel, D.2
  • 67
    • 0014632882 scopus 로고
    • Globule-coil transitions in homogeneous macromolecules
    • Y.Y. Eizner Globule-coil transitions in homogeneous macromolecules Polym. Sci. U.S.S.R. 11 1969 409 417
    • (1969) Polym. Sci. U.S.S.R. , vol.11 , pp. 409-417
    • Eizner, Y.Y.1
  • 68
    • 0018420216 scopus 로고
    • Internal condensation of a single DNA molecule
    • C.B. Post, and B.H. Zimm Internal condensation of a single DNA molecule Biopolymers 18 1979 1487 1501
    • (1979) Biopolymers , vol.18 , pp. 1487-1501
    • Post, C.B.1    Zimm, B.H.2
  • 70
    • 0026136464 scopus 로고
    • Coil-globule type transitions in polymers. 2. Theory of coil-globule transition in linear macromolecules
    • T.M. Birshtein, and V.A. Pryamitsyn Coil-globule type transitions in polymers. 2. Theory of coil-globule transition in linear macromolecules Macromolecules 24 1991 1554 1560
    • (1991) Macromolecules , vol.24 , pp. 1554-1560
    • Birshtein, T.M.1    Pryamitsyn, V.A.2
  • 71
    • 0026839336 scopus 로고
    • Quantitative theory of the globule-to-coil transition. 1. Link density distribution in a globule and its radius of gyration
    • A.Y. Grosberg, and D.V. Kuznetsov Quantitative theory of the globule-to-coil transition. 1. Link density distribution in a globule and its radius of gyration Macromolecules 25 1992 1970 1979
    • (1992) Macromolecules , vol.25 , pp. 1970-1979
    • Grosberg, A.Y.1    Kuznetsov, D.V.2
  • 72
    • 22944481207 scopus 로고    scopus 로고
    • Simulation study of the coil-globule transition of a polymer in solvent
    • J.M. Polson, and N.E. Moore Simulation study of the coil-globule transition of a polymer in solvent J. Chem. Phys. 122 2005 024905
    • (2005) J. Chem. Phys. , vol.122 , pp. 024905
    • Polson, J.M.1    Moore, N.E.2
  • 73
    • 84888419290 scopus 로고    scopus 로고
    • Unified view on the mean-field order of coil-globule transition
    • D. Yang and Q. Wang. Unified view on the mean-field order of coil-globule transition. ACS Macro Lett. 2:952-954.
    • ACS Macro Lett. , vol.2 , pp. 952-954
    • Yang, D.1    Wang, Q.2
  • 74
    • 79952279926 scopus 로고    scopus 로고
    • The fractal globule as a model of chromatin architecture in the cell
    • L.A. Mirny The fractal globule as a model of chromatin architecture in the cell Chromosome Res. 19 2011 37 51
    • (2011) Chromosome Res. , vol.19 , pp. 37-51
    • Mirny, L.A.1
  • 75
    • 84863534788 scopus 로고    scopus 로고
    • Physical descriptions of the bacterial nucleoid at large scales, and their biological implications
    • V.G. Benza, and B. Bassetti M.C. Lagomarsino Physical descriptions of the bacterial nucleoid at large scales, and their biological implications Rep. Prog. Phys. 75 2012 076602
    • (2012) Rep. Prog. Phys. , vol.75 , pp. 076602
    • Benza, V.G.1    Bassetti, B.2    Lagomarsino, M.C.3
  • 76
    • 67649505379 scopus 로고    scopus 로고
    • Switchable self-protected attractions in DNA-functionalized colloids
    • M.E. Leunissen, and R. Dreyfus P.M. Chaikin Switchable self-protected attractions in DNA-functionalized colloids Nat. Mater. 8 2009 590 595
    • (2009) Nat. Mater. , vol.8 , pp. 590-595
    • Leunissen, M.E.1    Dreyfus, R.2    Chaikin, P.M.3
  • 77
    • 67449126244 scopus 로고    scopus 로고
    • Towards self-replicating materials of DNA-functionalized colloids
    • M.E. Leunissen, and R. Dreyfus P.M. Chaikin Towards self-replicating materials of DNA-functionalized colloids Soft Matter 5 2009 2422 2430
    • (2009) Soft Matter , vol.5 , pp. 2422-2430
    • Leunissen, M.E.1    Dreyfus, R.2    Chaikin, P.M.3
  • 78
    • 0034237843 scopus 로고    scopus 로고
    • Dynamical intermediates in the collapse of semiflexible polymers in poor solvents
    • B. Schnurr, F.C. MacKintosh, and D.R.M. Williams Dynamical intermediates in the collapse of semiflexible polymers in poor solvents Europhys. Lett. 51 2000 279
    • (2000) Europhys. Lett. , vol.51 , pp. 279
    • Schnurr, B.1    Mackintosh, F.C.2    Williams, D.R.M.3
  • 80
    • 2942541592 scopus 로고    scopus 로고
    • Condensed states of a semiflexible homopolymer: Ordered globules and toroids
    • I.R. Cooke, and D.R.M. Williams Condensed states of a semiflexible homopolymer: ordered globules and toroids Physica A 339 2004 45 52
    • (2004) Physica A , vol.339 , pp. 45-52
    • Cooke, I.R.1    Williams, D.R.M.2
  • 82
    • 34547853743 scopus 로고    scopus 로고
    • Mesoscopic description of solvent effects on polymer dynamics
    • S.H. Lee, and R. Kapral Mesoscopic description of solvent effects on polymer dynamics J. Chem. Phys. 124 2006 214901
    • (2006) J. Chem. Phys. , vol.124 , pp. 214901
    • Lee, S.H.1    Kapral, R.2
  • 83
    • 84884198840 scopus 로고    scopus 로고
    • Maximum compaction density of folded semiflexible polymers
    • A. Lappala, and E.M. Terentjev Maximum compaction density of folded semiflexible polymers Macromolecules 46 2013 7125 7131
    • (2013) Macromolecules , vol.46 , pp. 7125-7131
    • Lappala, A.1    Terentjev, E.M.2
  • 84
    • 78650635183 scopus 로고    scopus 로고
    • Effect of confinement on the collapsing mechanism of a flexible polymer chain
    • S. Das, and S. Chakraborty Effect of confinement on the collapsing mechanism of a flexible polymer chain J. Chem. Phys. 133 2010 174904
    • (2010) J. Chem. Phys. , vol.133 , pp. 174904
    • Das, S.1    Chakraborty, S.2


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