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Volumn 9789048134731, Issue , 2010, Pages 97-116

Polymer physics for understanding bacterial chromosomes

Author keywords

Chromosome segregation; Molecular crowding; Necleoid compaction; Polymer physics

Indexed keywords


EID: 84859961094     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-90-481-3473-1_6     Document Type: Chapter
Times cited : (6)

References (57)
  • 1
    • 34548717559 scopus 로고
    • Phase transition for a hard sphere system
    • Alder BJ, Wainwright TE (1957) Phase transition for a hard sphere system. J Chem Phys 27:1208-1209
    • (1957) J Chem Phys , vol.27 , pp. 1208-1209
    • Alder, B.J.1    Wainwright, T.E.2
  • 2
    • 34848860442 scopus 로고    scopus 로고
    • Timescale of entropic segregation of flexible polymers in confinement: Implications for chromosome segregation in filamentous bacteria
    • Arnold A, Jun. S (2007) Timescale of entropic segregation of flexible polymers in confinement: implications for chromosome segregation in filamentous bacteria. Phys Rev E 76:031901
    • (2007) Phys Rev E , vol.76 , pp. 031901
    • Arnold, A.1    Jun, S.2
  • 3
    • 36148931768 scopus 로고    scopus 로고
    • FtsK and SpoIIIE: The tale of the conserved tails
    • Barre FX (2007) FtsK and SpoIIIE: the tale of the conserved tails. Mol Microbiol 66:1051-1055
    • (2007) Mol Microbiol , vol.66 , pp. 1051-1055
    • Barre, F.X.1
  • 4
    • 20444390654 scopus 로고    scopus 로고
    • Chromosome and replisome dynamics in E. coli: Loss of sister cohesion triggers global chromosome movement and mediates chromosome segregation
    • Bates D, Kleckner N (2005) Chromosome and replisome dynamics in E. coli: loss of sister cohesion triggers global chromosome movement and mediates chromosome segregation. Cell 121:899-911
    • (2005) Cell , vol.121 , pp. 899-911
    • Bates, D.1    Kleckner, N.2
  • 5
    • 33748650086 scopus 로고    scopus 로고
    • Spatial and temporal organization of the Bacillus subtilis replication cycle
    • Berkmen MB, Grossman AD (2006) Spatial and temporal organization of the Bacillus subtilis replication cycle. Mol Microbiol 62:57-71
    • (2006) Mol Microbiol , vol.62 , pp. 57-71
    • Berkmen, M.B.1    Grossman, A.D.2
  • 7
    • 3042599315 scopus 로고    scopus 로고
    • Linear ordering and dynamic segregation of the bacterial chromosome
    • Breier AM, Cozzarelli NR (2004) Linear ordering and dynamic segregation of the bacterial chromosome. Proc Natl Acad Sci USA 101:9175-9176
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9175-9176
    • Breier, A.M.1    Cozzarelli, N.R.2
  • 8
    • 33744806678 scopus 로고    scopus 로고
    • Self-avoiding flexible polymers under spherical confinement
    • Cacciuto A, Luijten E (2006) Self-avoiding flexible polymers under spherical confinement. Nano Lett 6:901-905
    • (2006) Nano Lett , vol.6 , pp. 901-905
    • Cacciuto, A.1    Luijten, E.2
  • 9
    • 0022909525 scopus 로고
    • Conjectures on the statistics of ring polymers
    • Cates ME, Deutsch JM (1986) Conjectures on the statistics of ring polymers. J Physique 47:2121-2128
    • (1986) J Physique , vol.47 , pp. 2121-2128
    • Cates, M.E.1    Deutsch, J.M.2
  • 10
    • 65349192825 scopus 로고    scopus 로고
    • Cell division: Breaking up is easy to do
    • Chen I (2009) Cell division: breaking up is easy to do. Curr Biol 19(8):R327-R328
    • (2009) Curr Biol , vol.19 , Issue.8 , pp. R327-R328
    • Chen, I.1
  • 11
    • 0037090539 scopus 로고    scopus 로고
    • Exploring intracellular space: Function of the Min system in round-shaped Escherichia coli
    • Corbin BD, Yu XC, Margolin W (2002) Exploring intracellular space: function of the Min system in round-shaped Escherichia coli. EMBO J 21:1998-2008
    • (2002) EMBO J , vol.21 , pp. 1998-2008
    • Corbin, B.D.1    Yu, X.C.2    Margolin, W.3
  • 13
    • 34548348945 scopus 로고    scopus 로고
    • MukB colocalizes with the oriC region and is required for organization of the two Escherichia coli chromosome arms into separate cell halves
    • Danilova O, Reyes-Lamothe R, Pinskaya M, Sherratt D, Possoz C (2007) MukB colocalizes with the oriC region and is required for organization of the two Escherichia coli chromosome arms into separate cell halves. Mol Microbiol 65:1485-1492
    • (2007) Mol Microbiol , vol.65 , pp. 1485-1492
    • Danilova, O.1    Reyes-Lamothe, R.2    Pinskaya, M.3    Sherratt, D.4    Possoz, C.5
  • 14
    • 0034305363 scopus 로고    scopus 로고
    • New genes with old modus operandi: The connection between supercoiling and partitioning of DNA in Escherichia coli
    • Dasgupta S, Maisnier-Patin S, Nordström K (2000) New genes with old modus operandi: the connection between supercoiling and partitioning of DNA in Escherichia coli. EMBO Reports 1:323-327
    • (2000) EMBO Reports , vol.1 , pp. 323-327
    • Dasgupta, S.1    Maisnier-Patin, S.2    Nordström, K.3
  • 15
    • 0037195084 scopus 로고    scopus 로고
    • Does RNA polymerase help drive chromosome segregation in bacteria?
    • Dworkin J, Losick R (2002) Does RNA polymerase help drive chromosome segregation in bacteria? Proc Natl Acad Sci USA 99:14089-14094
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 14089-14094
    • Dworkin, J.1    Losick, R.2
  • 16
    • 24744445788 scopus 로고    scopus 로고
    • Single-particle tracking of oriC-GFP fluorescent spots during chromosome segregation in Escherichia coli
    • Elmore S, Müller M, Vischer N, Odijk T, Woldringh CL (2005) Single-particle tracking of oriC-GFP fluorescent spots during chromosome segregation in Escherichia coli. J Struct Biol 151:275-287
    • (2005) J Struct Biol , vol.151 , pp. 275-287
    • Elmore, S.1    Müller, M.2    Vischer, N.3    Odijk, T.4    Woldringh, C.L.5
  • 17
    • 34447626090 scopus 로고    scopus 로고
    • Chromosome segregation in Escherichia coli division: A free energy-driven string model
    • Fan J, Tuncay K, Ortoleva PJ (2007) Chromosome segregation in Escherichia coli division: a free energy-driven string model. Comp Biol Chem 31:257-264
    • (2007) Comp Biol Chem , vol.31 , pp. 257-264
    • Fan, J.1    Tuncay, K.2    Ortoleva, P.J.3
  • 18
    • 33745288732 scopus 로고    scopus 로고
    • Fine-scale time-lapse analysis of the biphasic, dynamic behaviour of the two Vibrio cholerae chromosomes
    • Fiebig A, Keren K, Theriot JA (2006) Fine-scale time-lapse analysis of the biphasic, dynamic behaviour of the two Vibrio cholerae chromosomes. Mol Microbiol 60:1164-1178
    • (2006) Mol Microbiol , vol.60 , pp. 1164-1178
    • Fiebig, A.1    Keren, K.2    Theriot, J.A.3
  • 20
    • 36849125953 scopus 로고
    • Statistical mechanics of dilute polymer solutions II
    • Flory PJ, Krigbaum WR (1950) Statistical mechanics of dilute polymer solutions II. J Chem Phys 18:1086-1094
    • (1950) J Chem Phys , vol.18 , pp. 1086-1094
    • Flory, P.J.1    Krigbaum, W.R.2
  • 21
    • 33845460999 scopus 로고    scopus 로고
    • A dynamic, mitotic-like mechanism for bacterial chromosome segregation
    • Fogel MA, Waldor MK (2006) A dynamic, mitotic-like mechanism for bacterial chromosome segregation. Genes Dev 20:3269-3282
    • (2006) Genes Dev , vol.20 , pp. 3269-3282
    • Fogel, M.A.1    Waldor, M.K.2
  • 22
    • 0000814740 scopus 로고
    • Polymeric coils with excluded volume in dilute solution: The invalidity of the model of impenetrable spheres and the influence of excluded volume on the rates of diffusion-controlled intermacromolecular reactions
    • Grosberg AY, Khalatur PG, Khokhlov AR (1982) Polymeric coils with excluded volume in dilute solution: the invalidity of the model of impenetrable spheres and the influence of excluded volume on the rates of diffusion-controlled intermacromolecular reactions. Die Makromol Chem, Rapid Commun 3:709-713
    • (1982) Die Makromol Chem, Rapid Commun , vol.3 , pp. 709-713
    • Grosberg, A.Y.1    Khalatur, P.G.2    Khokhlov, A.R.3
  • 24
    • 0034652329 scopus 로고    scopus 로고
    • Closing the ring: Links between SMC proteins and chromosome partitioning, condensation, and supercoiling
    • Holmes VF, Cozzarelli NR (2000) Closing the ring: links between SMC proteins and chromosome partitioning, condensation, and supercoiling. Proc Natl Acad Sci USA 97:1322-1324
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1322-1324
    • Holmes, V.F.1    Cozzarelli, N.R.2
  • 25
    • 33947211308 scopus 로고    scopus 로고
    • MreB is important for cell shape but not for chromosome segregation of the filamentous cyanobacterium Anabaena sp. PCC 7120
    • Hu B, Yang G, Zhao W, Zhang Y, Zhao J (2007) MreB is important for cell shape but not for chromosome segregation of the filamentous cyanobacterium Anabaena sp. PCC 7120. Mol Microbiol 63:1640-1652
    • (2007) Mol Microbiol , vol.63 , pp. 1640-1652
    • Hu, B.1    Yang, G.2    Zhao, W.3    Zhang, Y.4    Zhao, J.5
  • 26
    • 27244437938 scopus 로고    scopus 로고
    • Min-protein oscillations in round bacteria
    • Huang KC, Wingreen NS (2004) Min-protein oscillations in round bacteria. Phys Biol 1:229-235
    • (2004) Phys Biol , vol.1 , pp. 229-235
    • Huang, K.C.1    Wingreen, N.S.2
  • 27
    • 0000606955 scopus 로고
    • On the regulation of DNA R replication in bacteria
    • Jacob F, Brenner S, Cuzin F (1963) On the regulation of DNA R replication in bacteria. J Mol Biol 28:329-348
    • (1963) J Mol Biol , vol.28 , pp. 329-348
    • Jacob, F.1    Brenner, S.2    Cuzin, F.3
  • 28
    • 33947603724 scopus 로고    scopus 로고
    • Confined space and effective interactions of multiple self-avoiding chains
    • Jun. S, Arnold A, Ha B-Y (2007) Confined space and effective interactions of multiple self-avoiding chains. Phys Rev Lett 98:128303
    • (2007) Phys Rev Lett , vol.98 , pp. 128303
    • Jun, S.1    Arnold, A.2    Ha, B.-Y.3
  • 29
    • 33747615506 scopus 로고    scopus 로고
    • Entropy-driven spatial organization of highly confined polymers: Lessons for the bacterial chromosome
    • Jun. S, Mulder B (2006) Entropy-driven spatial organization of highly confined polymers: lessons for the bacterial chromosome. Proc Natl Acad Sci USA 103:12388-12393
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 12388-12393
    • Jun, S.1    Mulder, B.2
  • 31
    • 0033040987 scopus 로고    scopus 로고
    • Intracellular bacterial symbionts of aphids possess many genomic copies per bacterium
    • Komaki K, Ishikawa H (1999) Intracellular bacterial symbionts of aphids possess many genomic copies per bacterium. J Mol Evol 48:717-722
    • (1999) J Mol Evol , vol.48 , pp. 717-722
    • Komaki, K.1    Ishikawa, H.2
  • 32
    • 0035881478 scopus 로고    scopus 로고
    • The extrusion-capture model for chromosome partitioning in bacteria
    • Lemon KP, Grossman AD (2001) The extrusion-capture model for chromosome partitioning in bacteria. Genes Dev 15:2031-2041
    • (2001) Genes Dev , vol.15 , pp. 2031-2041
    • Lemon, K.P.1    Grossman, A.D.2
  • 34
    • 58649111971 scopus 로고    scopus 로고
    • Actin homolog MreB affects chromosome segregation by regulating topoisomerase IV in Escherichia coli
    • Madabhushi R, Marians KJ (2009) Actin homolog MreB affects chromosome segregation by regulating topoisomerase IV in Escherichia coli. Mol Cell 33:171-180
    • (2009) Mol Cell , vol.33 , pp. 171-180
    • Madabhushi, R.1    Marians, K.J.2
  • 36
    • 0030730114 scopus 로고    scopus 로고
    • Polymer models of meiotic and mitotic chromosomes
    • Marko JF, Siggia ED (1997) Polymer models of meiotic and mitotic chromosomes. Mol Biol Cell 8:2217-2231
    • (1997) Mol Biol Cell , vol.8 , pp. 2217-2231
    • Marko, J.F.1    Siggia, E.D.2
  • 37
    • 0036855878 scopus 로고    scopus 로고
    • Models on stickiness of replicated Escherichia coli oriC
    • Nanninga N, Roos M, Woldringh CL (2002) Models on stickiness of replicated Escherichia coli oriC. Microbiology 148:3327-3328
    • (2002) Microbiology , vol.148 , pp. 3327-3328
    • Nanninga, N.1    Roos, M.2    Woldringh, C.L.3
  • 38
    • 33749177128 scopus 로고    scopus 로고
    • The Escherichia coli chromosome is organized with the left and right chromosome arms in separate cell halves
    • Nielsen HJ, Ottesen JR, Youngren B, Austin SJ, Hansen FG (2006) The Escherichia coli chromosome is organized with the left and right chromosome arms in separate cell halves. Mol Microbiol 62:331-338
    • (2006) Mol Microbiol , vol.62 , pp. 331-338
    • Nielsen, H.J.1    Ottesen, J.R.2    Youngren, B.3    Austin, S.J.4    Hansen, F.G.5
  • 39
    • 33751573278 scopus 로고    scopus 로고
    • DNA conned in nanochannels: Hairpin tightening by entropic depletion
    • Odijk T (2006) DNA conned in nanochannels: Hairpin tightening by entropic depletion. J Chem Phys 125:204904
    • (2006) J Chem Phys , vol.125 , pp. 204904
    • Odijk, T.1
  • 40
    • 84971301149 scopus 로고
    • The effect of shape on the interaction of colloidal particles
    • Onsager L (1949) The effect of shape on the interaction of colloidal particles. Ann NY Acad Sci 51:627-659
    • (1949) Ann NY Acad Sci , vol.51 , pp. 627-659
    • Onsager, L.1
  • 41
    • 33645958276 scopus 로고    scopus 로고
    • Polymer chains in confined spaces and flow-injection problems: Some remarks
    • Sakaue T, Raphaël (2006) Polymer chains in confined spaces and flow-injection problems: some remarks. Macromolecules 39:2621-2628
    • (2006) Macromolecules , vol.39 , pp. 2621-2628
    • Sakaue, T.1    Raphaël2
  • 42
    • 0034652090 scopus 로고    scopus 로고
    • Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I
    • Sawitzke JA, Austin S (2000) Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I. Proc Natl Acad Sci USA 97:1671-1676
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1671-1676
    • Sawitzke, J.A.1    Austin, S.2
  • 43
    • 0004146634 scopus 로고
    • Cambridge University Press, Cambridge, UK
    • Schrödinger (1944) What is life? Cambridge University Press, Cambridge, UK
    • (1944) What is life?
    • Schrödinger1
  • 44
    • 34247517469 scopus 로고    scopus 로고
    • DNA - Protein interactions and bacterial chromosome architecture
    • Stavans J, Oppenheim A (2006) DNA - protein interactions and bacterial chromosome architecture. Phys Biol 3:R1-R10
    • (2006) Phys Biol , vol.3 , pp. R1-R10
    • Stavans, J.1    Oppenheim, A.2
  • 45
    • 0035725457 scopus 로고    scopus 로고
    • Sister chromosome cohesion of Escherichia coli
    • Sunako Y, Onogi T, Hiraga S (2001) Sister chromosome cohesion of Escherichia coli. Mol Microbiol 42:1233-1241
    • (2001) Mol Microbiol , vol.42 , pp. 1233-1241
    • Sunako, Y.1    Onogi, T.2    Hiraga, S.3
  • 48
    • 55749095037 scopus 로고    scopus 로고
    • Caulobacter requires a dedicated mechanism to initiate chromosome segregation
    • Toro E, Hong S-H, McAdams HH, Shapiro L (2008) Caulobacter requires a dedicated mechanism to initiate chromosome segregation. Proc Natl Acad Sci USA 105:15435-15440
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 15435-15440
    • Toro, E.1    Hong, S.-H.2    McAdams, H.H.3    Shapiro, L.4
  • 49
    • 0000457477 scopus 로고    scopus 로고
    • Architecture of a bacterial chromosome
    • Trun NJ, Marko JF (1998) Architecture of a bacterial chromosome. ASM News 64:276-283
    • (1998) ASM News , vol.64 , pp. 276-283
    • Trun, N.J.1    Marko, J.F.2
  • 50
    • 0000617794 scopus 로고    scopus 로고
    • Polymer theory: Path integrals and scaling
    • Vilgis TA (2000) Polymer theory: path integrals and scaling. Phys Rep 336:167-254
    • (2000) Phys Rep , vol.336 , pp. 167-254
    • Vilgis, T.A.1
  • 51
    • 3042548402 scopus 로고    scopus 로고
    • Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication
    • Viollier PH, Thanbichler M, McGrath PT, West L, Meewan M, McAdams HH, Shapiro L (2004) Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication. Proc Natl Acad Sci USA 101:9257-9262
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9257-9262
    • Viollier, P.H.1    Thanbichler, M.2    McGrath, P.T.3    West, L.4    Meewan, M.5    McAdams, H.H.6    Shapiro, L.7
  • 52
    • 0018873836 scopus 로고    scopus 로고
    • A square bacterium
    • Walsby AE (2000) A square bacterium. Nature 283:69-71
    • (2000) Nature , vol.283 , pp. 69-71
    • Walsby, A.E.1
  • 53
    • 33745603713 scopus 로고    scopus 로고
    • The two Escherichia coli chromosome arms locate to separate cell halves
    • Wang X, Liu X, Possoz C, Sherratt DJ (2006) The two Escherichia coli chromosome arms locate to separate cell halves. Genes Dev 20:1727-1731
    • (2006) Genes Dev , vol.20 , pp. 1727-1731
    • Wang, X.1    Liu, X.2    Possoz, C.3    Sherratt, D.J.4
  • 55
    • 0036050398 scopus 로고    scopus 로고
    • The role of co-transcriptional translation and protein translocation (transertion) in bacterial chromosome segregation
    • Woldringh CL (2002) The role of co-transcriptional translation and protein translocation (transertion) in bacterial chromosome segregation. Mol Microbiol 45:17-29
    • (2002) Mol Microbiol , vol.45 , pp. 17-29
    • Woldringh, C.L.1
  • 57
    • 36849135353 scopus 로고
    • Preliminary results from a recalculation of the Monte Carlo equation of state of hard spheres
    • Wood WW, Jacobson JD (1957) Preliminary results from a recalculation of the Monte Carlo equation of state of hard spheres. J Chem Phys 27:1207-1208
    • (1957) J Chem Phys , vol.27 , pp. 1207-1208
    • Wood, W.W.1    Jacobson, J.D.2


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