-
1
-
-
84878464979
-
Population genomics based on low coverage sequencing: how low should we go?
-
Buerkle CA, Gompert Z (2013) Population genomics based on low coverage sequencing: how low should we go? Molecular Ecology, 22, 3028-3035.
-
(2013)
Molecular Ecology
, vol.22
, pp. 3028-3035
-
-
Buerkle, C.A.1
Gompert, Z.2
-
2
-
-
61449135985
-
Fast and flexible simulation of DNA sequence data
-
Chen GK, Marjoram P, Wall JD (2009) Fast and flexible simulation of DNA sequence data. Genome Research, 19, 136-142.
-
(2009)
Genome Research
, vol.19
, pp. 136-142
-
-
Chen, G.K.1
Marjoram, P.2
Wall, J.D.3
-
3
-
-
84907483586
-
Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals
-
Advance access.
-
Cheng AY, Teo YY, Ong RTH (2014) Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals. Bioinformatics. Advance access.
-
(2014)
Bioinformatics
-
-
Cheng, A.Y.1
Teo, Y.Y.2
Ong, R.T.H.3
-
4
-
-
84876057069
-
Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data
-
Crawford JE, Lazzaro BP (2012) Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data. Frontiers in Genetics, 3, 66.
-
(2012)
Frontiers in Genetics
, vol.3
, pp. 66
-
-
Crawford, J.E.1
Lazzaro, B.P.2
-
5
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, Banks E, Poplin R et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature Genetics, 43, 491-498.
-
(2011)
Nature Genetics
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
-
6
-
-
84855989774
-
Fast computation and applications of genome mappability
-
Derrien T, Estellé J, Marco Sola S et al. (2012) Fast computation and applications of genome mappability. PLoS One, 7, e30377.
-
(2012)
PLoS One
, vol.7
, pp. e30377
-
-
Derrien, T.1
Estellé, J.2
Marco Sola, S.3
-
7
-
-
84865106490
-
Neutrality tests for sequences with missing data
-
Ferretti L, Raineri E, Ramos-Onsins S (2012) Neutrality tests for sequences with missing data. Genetics, 191, 1397-1401.
-
(2012)
Genetics
, vol.191
, pp. 1397-1401
-
-
Ferretti, L.1
Raineri, E.2
Ramos-Onsins, S.3
-
8
-
-
84870822864
-
Tools for mapping high-throughput sequencing data
-
Fonseca NA, Rung J, Brazma A, Marioni JC (2012) Tools for mapping high-throughput sequencing data. Bioinformatics, 28, 3169-3177.
-
(2012)
Bioinformatics
, vol.28
, pp. 3169-3177
-
-
Fonseca, N.A.1
Rung, J.2
Brazma, A.3
Marioni, J.C.4
-
9
-
-
84894161596
-
Assessing the effect of sequencing depth and sample size in population genetics inferences
-
Fumagalli M (2013) Assessing the effect of sequencing depth and sample size in population genetics inferences. PLoS One, 8, e79667.
-
(2013)
PLoS One
, vol.8
, pp. e79667
-
-
Fumagalli, M.1
-
10
-
-
84895760521
-
Characterizing bias in population genetic inferences from low-coverage sequencing data
-
Han E, Sinsheimer JS, Novembre J (2014) Characterizing bias in population genetic inferences from low-coverage sequencing data. Molecular Biology and Evolution, 31, 723-35.
-
(2014)
Molecular Biology and Evolution
, vol.31
, pp. 723-735
-
-
Han, E.1
Sinsheimer, J.S.2
Novembre, J.3
-
11
-
-
56649111423
-
A flexible forward simulator for populations subject to selection and demography
-
Hernandez RD (2008) A flexible forward simulator for populations subject to selection and demography. Bioinformatics, 24, 2786-2787.
-
(2008)
Bioinformatics
, vol.24
, pp. 2786-2787
-
-
Hernandez, R.D.1
-
12
-
-
84857145150
-
ART: a next-generation sequencing read simulator
-
Huang W, Li L, Myers JR, Marth GT (2012) ART: a next-generation sequencing read simulator. Bioinformatics, 28, 593-594.
-
(2012)
Bioinformatics
, vol.28
, pp. 593-594
-
-
Huang, W.1
Li, L.2
Myers, J.R.3
Marth, G.T.4
-
13
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson RR (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics, 18, 337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
14
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg S (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology, 10, R25.
-
(2009)
Genome Biology
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
15
-
-
84864326252
-
Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score
-
Lee H, Schatz MC (2012) Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score. Bioinformatics, 28, 2097-105.
-
(2012)
Bioinformatics
, vol.28
, pp. 2097-2105
-
-
Lee, H.1
Schatz, M.C.2
-
16
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
17
-
-
77957272611
-
A survey of sequence alignment algorithms for next-generation sequencing
-
Li H, Homer N (2010) A survey of sequence alignment algorithms for next-generation sequencing. Briefings in Bioinformatics, 11, 473-483.
-
(2010)
Briefings in Bioinformatics
, vol.11
, pp. 473-483
-
-
Li, H.1
Homer, N.2
-
18
-
-
68549104404
-
The sequence alignment/map (SAM) format and SAMtools
-
Li H, Handsaker B, Wysoker A et al. (2009) The sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
19
-
-
72849144434
-
Sequencing technologies - the next generation
-
Metzker ML (2010) Sequencing technologies - the next generation. Nature Reviews Genetics, 11, 31-46.
-
(2010)
Nature Reviews Genetics
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
20
-
-
84879043343
-
Quantifying single nucleotide variant detection sensitivity in exome sequencing
-
Meynert AM, Bicknell LS, Hurles ME, Jackson AP, Taylor MS (2013) Quantifying single nucleotide variant detection sensitivity in exome sequencing. BMC Bioinformatics, 14, 195.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 195
-
-
Meynert, A.M.1
Bicknell, L.S.2
Hurles, M.E.3
Jackson, A.P.4
Taylor, M.S.5
-
21
-
-
84897110582
-
Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics
-
Nevado B, Ramos-Onsins SE, Perez-Enciso M (2014) Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics. Molecular Ecology, 23, 1764-1779.
-
(2014)
Molecular Ecology
, vol.23
, pp. 1764-1779
-
-
Nevado, B.1
Ramos-Onsins, S.E.2
Perez-Enciso, M.3
-
22
-
-
79956314887
-
Genotype and SNP calling from next-generation sequencing data
-
Nielsen R, Paul JS, Albrechtsen A, Song YS (2011) Genotype and SNP calling from next-generation sequencing data. Nature Reviews Genetics, 12, 443-451.
-
(2011)
Nature Reviews Genetics
, vol.12
, pp. 443-451
-
-
Nielsen, R.1
Paul, J.S.2
Albrechtsen, A.3
Song, Y.S.4
-
23
-
-
84864273210
-
SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data
-
Nielsen R, Korneliussen T, Albrechtsen A, Li Y, Wang J (2012) SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data. PLoS One, 7, e37558.
-
(2012)
PLoS One
, vol.7
, pp. e37558
-
-
Nielsen, R.1
Korneliussen, T.2
Albrechtsen, A.3
Li, Y.4
Wang, J.5
-
24
-
-
77649263292
-
Population genetic inference from genomic sequence variation
-
Pool JE, Hellmann I, Jensen JD, Nielsen R (2010) Population genetic inference from genomic sequence variation. Genome Research, 20, 291-300.
-
(2010)
Genome Research
, vol.20
, pp. 291-300
-
-
Pool, J.E.1
Hellmann, I.2
Jensen, J.D.3
Nielsen, R.4
-
25
-
-
80053978849
-
Comparative analysis of algorithms for next-generation sequencing read alignment
-
Ruffalo M, LaFramboise T, Koyuturk M (2011) Comparative analysis of algorithms for next-generation sequencing read alignment. Bioinformatics, 27, 2790-2796.
-
(2011)
Bioinformatics
, vol.27
, pp. 2790-2796
-
-
Ruffalo, M.1
LaFramboise, T.2
Koyuturk, M.3
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