-
3
-
-
80054746492
-
Exome sequencing as a tool for mendelian disease gene discovery
-
Bamshad MJ, Ng SB, Bigham AW, Tabor HK, Emond MJ, et al. (2011) Exome sequencing as a tool for mendelian disease gene discovery. Nature reviewsGenetics 12: 745-755.
-
(2011)
Nature ReviewsGenetics
, vol.12
, pp. 745-755
-
-
Bamshad, M.J.1
Ng, S.B.2
Bigham, A.W.3
Tabor, H.K.4
Emond, M.J.5
-
4
-
-
77949915021
-
Conservation genetics in transition to conservation genomics
-
Ouborg NJ, Pertoldi C, Loeschcke V, Bijlsma RK, Hedrick PW (2010) Conservation genetics in transition to conservation genomics. Trends in genetics: TIG 26: 177-187.
-
(2010)
Trends in Genetics: TIG
, vol.26
, pp. 177-187
-
-
Ouborg, N.J.1
Pertoldi, C.2
Loeschcke, V.3
Bijlsma, R.K.4
Hedrick, P.W.5
-
5
-
-
72849144434
-
Sequencing technologies - The next generation
-
Metzker ML (2010) Sequencing technologies - the next generation. Nature reviews Genetics 11: 31-46.
-
(2010)
Nature Reviews Genetics
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
6
-
-
84876057069
-
Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data
-
Crawford JE, Lazzaro BP (2012) Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data. Frontiers in genetics 3: 66.
-
(2012)
Frontiers in Genetics
, vol.3
, pp. 66
-
-
Crawford, J.E.1
Lazzaro, B.P.2
-
7
-
-
84890116555
-
Unlocking the vault: Next generation museum population genomics
-
under review
-
Bi K, Linderoth T, Vanderpool D, Good JM, Nielsen R, et al. (2013) Unlocking the vault: next generation museum population genomics. Molecular Ecology under review.
-
(2013)
Molecular Ecology
-
-
Bi, K.1
Linderoth, T.2
Vanderpool, D.3
Good, J.M.4
Nielsen, R.5
-
8
-
-
67849128665
-
Estimation of allele frequencies from high-coverage genomesequencing projects
-
Lynch M (2009) Estimation of allele frequencies from high-coverage genomesequencing projects. Genetics 182: 295-301.
-
(2009)
Genetics
, vol.182
, pp. 295-301
-
-
Lynch, M.1
-
9
-
-
80051532482
-
Inference of site frequency spectra from highthroughput sequence data: Quantification of selection on nonsynonymous and synonymous sites in humans
-
Keightley PD, Halligan DL (2011) Inference of site frequency spectra from highthroughput sequence data: quantification of selection on nonsynonymous and synonymous sites in humans. Genetics 188: 931-940.
-
(2011)
Genetics
, vol.188
, pp. 931-940
-
-
Keightley, P.D.1
Halligan, D.L.2
-
10
-
-
79958078775
-
Estimation of allele frequency and association mapping using next-generation sequencing data
-
Kim SY, Lohmueller KE, Albrechtsen A, Li Y, Korneliussen T, et al. (2011) Estimation of allele frequency and association mapping using next-generation sequencing data. BMC bioinformatics 12: 231.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 231
-
-
Kim, S.Y.1
Lohmueller, K.E.2
Albrechtsen, A.3
Li, Y.4
Korneliussen, T.5
-
11
-
-
84864273210
-
Snp calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data
-
Nielsen R, Korneliussen T, Albrechtsen A, Li Y, Wang J (2012) Snp calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data. PloS one 7: e37558.
-
(2012)
PloS One
, vol.7
-
-
Nielsen, R.1
Korneliussen, T.2
Albrechtsen, A.3
Li, Y.4
Wang, J.5
-
12
-
-
80054915847
-
A statistical framework for snp calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
-
Oxford, England
-
Li H (2011) A statistical framework for snp calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics (Oxford, England) 27: 2987-2993.
-
(2011)
Bioinformatics
, vol.27
, pp. 2987-2993
-
-
Li, H.1
-
13
-
-
80053985877
-
Inference of population mutation rate and detection of segregating sites from next-generation sequence data
-
Kang CJ, Marjoram P (2011) Inference of population mutation rate and detection of segregating sites from next-generation sequence data. Genetics 189: 595-605.
-
(2011)
Genetics
, vol.189
, pp. 595-605
-
-
Kang, C.J.1
Marjoram, P.2
-
14
-
-
77954319020
-
Sequencing of 50 human exomes reveals adaptation to high altitude
-
New York, NY
-
Yi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZX, et al. (2010) Sequencing of 50 human exomes reveals adaptation to high altitude. Science (New York, NY) 329: 75-78.
-
(2010)
Science
, vol.329
, pp. 75-78
-
-
Yi, X.1
Liang, Y.2
Huerta-Sanchez, E.3
Jin, X.4
Cuo, Z.X.5
-
15
-
-
79953184676
-
A hierarchical bayesian model for nextgeneration population genomics
-
Gompert Z, Buerkle CA (2011) A hierarchical bayesian model for nextgeneration population genomics. Genetics 187: 903-917.
-
(2011)
Genetics
, vol.187
, pp. 903-917
-
-
Gompert, Z.1
Buerkle, C.A.2
-
16
-
-
84863512164
-
Genomic regions with a history of divergent selection affect fitness of hybrids between two butterfly species
-
Gompert Z, Lucas LK, Nice CC, Fordyce JA, Forister ML, et al. (2012) Genomic regions with a history of divergent selection affect fitness of hybrids between two butterfly species. Evolution; international journal of organic evolution 66: 2167-2181.
-
(2012)
Evolution; International Journal of Organic Evolution
, vol.66
, pp. 2167-2181
-
-
Gompert, Z.1
Lucas, L.K.2
Nice, C.C.3
Fordyce, J.A.4
Forister, M.L.5
-
17
-
-
84887078795
-
Quantifying population genetic differentiation from next-generation sequencing data
-
Epub ahead of print
-
Fumagalli M, Vieira FG, Korneliussen TS, Linderoth TP, Huerta-Sanchez E, et al. (2013) Quantifying population genetic differentiation from next-generation sequencing data. Genetics Epub ahead of print.
-
(2013)
Genetics
-
-
Fumagalli, M.1
Vieira, F.G.2
Korneliussen, T.S.3
Linderoth, T.P.4
Huerta-Sanchez, E.5
-
18
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen R (2005)Molecular signatures of natural selection. Annual Review of Genetics 39: 197-218.
-
(2005)
Annual Review of Genetics
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
19
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Hudson RR, Kreitman M, Aguade M (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguade, M.3
-
20
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by dna polymorphism
-
Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by dna polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
21
-
-
0026709389
-
Estimation of levels of gene flow from dna sequence data
-
Hudson RR, Slatkin M, Maddison WP (1992) Estimation of levels of gene flow from dna sequence data. Genetics 132: 583-589.
-
(1992)
Genetics
, vol.132
, pp. 583-589
-
-
Hudson, R.R.1
Slatkin, M.2
Maddison, W.P.3
-
22
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
Fu YX, Li WH (1993) Statistical tests of neutrality of mutations. Genetics 133: 693-709.
-
(1993)
Genetics
, vol.133
, pp. 693-709
-
-
Fu, Y.X.1
Li, W.H.2
-
23
-
-
84873589790
-
Anisotropic isolation by distance: The main orientations of human genetic differentiation
-
Jay F, Sjdin P, Jakobsson M, Blum MG (2013) Anisotropic isolation by distance: the main orientations of human genetic differentiation. Molecular biology and evolution 30: 513-525.
-
(2013)
Molecular Biology and Evolution
, vol.30
, pp. 513-525
-
-
Jay, F.1
Sjdin, P.2
Jakobsson, M.3
Blum, M.G.4
-
24
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
DOI 10.1038/ng1847, PII NG1847
-
Price AL, Patterson NJ, Plenge RM,WeinblattME, Shadick NA, et al. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nature genetics 38: 904-909. (Pubitemid 44141658)
-
(2006)
Nature Genetics
, vol.38
, Issue.8
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
Reich, D.6
-
25
-
-
0018080152
-
Synthetic maps of human gene frequencies in europeans
-
New York, NY
-
Menozzi P, Piazza A, Cavalli-Sforza L (1978) Synthetic maps of human gene frequencies in europeans. Science (New York, NY) 201: 786-792.
-
(1978)
Science
, vol.201
, pp. 786-792
-
-
Menozzi, P.1
Piazza, A.2
Cavalli-Sforza, L.3
-
26
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Genomes Project Consortium
-
Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
27
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
Genomes Project Consortium
-
Genomes Project Consortium, Abecasis GR, Auton A, Brooks LD, DePristo MA, et al. (2012) An integrated map of genetic variation from 1,092 human genomes. Nature 491: 56-65.
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
Abecasis, G.R.1
Auton, A.2
Brooks, L.D.3
DePristo, M.A.4
-
28
-
-
84859636918
-
A fine-scale chimpanzee genetic map from population sequencing
-
New York, NY
-
Auton A, Fledel-Alon A, Pfeifer S, Venn O, Segurel L, et al. (2012) A fine-scale chimpanzee genetic map from population sequencing. Science (New York, NY) 336: 193-198.
-
(2012)
Science
, vol.336
, pp. 193-198
-
-
Auton, A.1
Fledel-Alon, A.2
Pfeifer, S.3
Venn, O.4
Segurel, L.5
-
29
-
-
84867875610
-
A map of rice genome variation reveals the origin of cultivated rice
-
Huang X, Kurata N, Wei X, Wang ZX, Wang A, et al. (2012) A map of rice genome variation reveals the origin of cultivated rice. Nature 490: 497-501.
-
(2012)
Nature
, vol.490
, pp. 497-501
-
-
Huang, X.1
Kurata, N.2
Wei, X.3
Wang, Z.X.4
Wang, A.5
-
30
-
-
84872333179
-
Deep whole-genome sequencing of 100 southeast asian malays
-
Wong LP, Ong RT, Poh WT, Liu X, Chen P, et al. (2013) Deep whole-genome sequencing of 100 southeast asian malays. American Journal of Human Genetics 92: 52-66.
-
(2013)
American Journal of Human Genetics
, vol.92
, pp. 52-66
-
-
Wong, L.P.1
Ong, R.T.2
Poh, W.T.3
Liu, X.4
Chen, P.5
-
31
-
-
84860817223
-
Recent explosive human population growth has resulted in an excess of rare genetic variants
-
Keinan A, Clark AG (2012) Recent explosive human population growth has resulted in an excess of rare genetic variants. Science 336: 740-743.
-
(2012)
Science
, vol.336
, pp. 740-743
-
-
Keinan, A.1
Clark, A.G.2
-
32
-
-
84887421071
-
Estimating inbreeding coefficients from ngs data: Impact on genotype calling and allele frequency estimation
-
Epub ahead of print
-
Vieira FG, Fumagalli M, Albrechtsen A, Nielsen R (2013) Estimating inbreeding coefficients from ngs data: impact on genotype calling and allele frequency estimation. Genome Research Epub ahead of print.
-
(2013)
Genome Research
-
-
Vieira, F.G.1
Fumagalli, M.2
Albrechtsen, A.3
Nielsen, R.4
-
35
-
-
77954198372
-
Design of association studies with pooled or un-pooled next-generation sequencing data
-
Kim SY, Li Y, Guo Y, Li R, Holmkvist J, et al. (2010) Design of association studies with pooled or un-pooled next-generation sequencing data. Genetic epidemiology 34: 479-491.
-
(2010)
Genetic Epidemiology
, vol.34
, pp. 479-491
-
-
Kim, S.Y.1
Li, Y.2
Guo, Y.3
Li, R.4
Holmkvist, J.5
-
36
-
-
0042634161
-
Likelihood-based inference for genetic correlation coefficients
-
Balding DJ (2003) Likelihood-based inference for genetic correlation coefficients. Theoretical population biology 63: 221-230.
-
(2003)
Theoretical Population Biology
, vol.63
, pp. 221-230
-
-
Balding, D.J.1
-
37
-
-
0035528928
-
Case-control studies of association in structured or admixed populations
-
DOI 10.1006/tpbi.2001.1543
-
Pritchard JK, Donnelly P (2001) Case-control studies of association in structured or admixed populations. Theoretical population biology 60: 227-237. (Pubitemid 34235093)
-
(2001)
Theoretical Population Biology
, vol.60
, Issue.3
, pp. 227-237
-
-
Pritchard, J.K.1
Donnelly, P.2
-
38
-
-
67349176068
-
Genetics in geographically structured populations: Defining, estimating and interpreting f(st)
-
Holsinger KE, Weir BS (2009) Genetics in geographically structured populations: defining, estimating and interpreting f(st). Nature reviewsGenetics 10: 639-650.
-
(2009)
Nature ReviewsGenetics
, vol.10
, pp. 639-650
-
-
Holsinger, K.E.1
Weir, B.S.2
-
39
-
-
55549097836
-
Mapping short dna sequencing reads and calling variants using mapping quality scores
-
Li H, Ruan J, Durbin R (2008) Mapping short dna sequencing reads and calling variants using mapping quality scores. Genome research 18: 1851-1858.
-
(2008)
Genome Research
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
41
-
-
77249170740
-
Comparing spatial maps of human population-genetic variation using procrustes analysis
-
Wang C, Szpiech ZA, Degnan JH, Jakobsson M, Pemberton TJ, et al. (2010) Comparing spatial maps of human population-genetic variation using procrustes analysis. Statistical applications in genetics and molecular biology 9: Article 13.
-
(2010)
Statistical Applications in Genetics and Molecular Biology
, vol.9
, pp. 13
-
-
Wang, C.1
Szpiech, Z.A.2
Degnan, J.H.3
Jakobsson, M.4
Pemberton, T.J.5
|