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Volumn 5, Issue , 2015, Pages 8028-

Erratum: The First Small-Molecule Inhibitors of Members of the Ribonuclease E Family (Scientific Reports 5, 8028, (10.1038/srep08028));The first small-molecule inhibitors of members of the ribonuclease E family

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI PROTEIN; MOLECULAR LIBRARY; RIBONUCLEASE; RIBONUCLEASE E; RNG PROTEIN, E COLI;

EID: 84923021067     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/SREP09781     Document Type: Erratum
Times cited : (26)

References (44)
  • 2
    • 77955149193 scopus 로고    scopus 로고
    • The critical role of RNA processing and degradation in the control of gene expression
    • Arraiano, C. M. et al. The critical role of RNA processing and degradation in the control of gene expression. FEMS Microbiol. Rev. 34, 883-923 (2010).
    • (2010) FEMS Microbiol. Rev. , vol.34 , pp. 883-923
    • Arraiano, C.M.1
  • 3
    • 64049118181 scopus 로고    scopus 로고
    • Endonucleolytic Initiation of mRNA decay in escherichia coli
    • Carpousis, A. J., Luisi, B. F. & McDowall, K. J. Endonucleolytic Initiation of mRNA Decay in Escherichia coli. Prog Mol Biol Trans Sci. 85, 91-135 (2009).
    • (2009) Prog Mol Biol Trans Sci. , vol.85 , pp. 91-135
    • Carpousis, A.J.1    Luisi, B.F.2    McDowall, K.J.3
  • 4
    • 0033577789 scopus 로고    scopus 로고
    • RNase G (CafA protein) and RNase E are both required for the 59 maturation of 16S ribosomal RNA
    • Li, Z. W., Pandit, S. & Deutscher, M. P. RNase G (CafA protein) and RNase E are both required for the 59 maturation of 16S ribosomal RNA. EMBO J. 18, 2878-2885 (1999).
    • (1999) EMBO J , vol.18 , pp. 2878-2885
    • Li, Z.W.1    Pandit, S.2    Deutscher, M.P.3
  • 5
    • 0033532514 scopus 로고    scopus 로고
    • Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 59 end of 16S rRNA
    • Wachi, M., Umitsuki, G., Shimizu, M., Takada, A. & Nagai, K. Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 59 end of 16S rRNA. Biochem. Biophys. Res. Commun. 259, 483-488 (1999).
    • (1999) Biochem. Biophys. Res. Commun. , vol.259 , pp. 483-488
    • Wachi, M.1    Umitsuki, G.2    Shimizu, M.3    Takada, A.4    Nagai, K.5
  • 6
    • 84920786962 scopus 로고    scopus 로고
    • Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli
    • Clarke, J. E., Kime, L., Romero, A. D. &McDowall, K. J. Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli. Nucleic Acids Res. 42, 11733-11751 (2015).
    • (2015) Nucleic Acids Res. , vol.42 , pp. 11733-11751
    • Clarke, J.E.1    Kime, L.2    Romero, A.D.3    McDowall, K.J.4
  • 7
    • 0036274640 scopus 로고    scopus 로고
    • RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli
    • Lee, K., Bernstein, J. A. & Cohen, S. N. RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli. Mol. Microbiol. 43, 1445-1456 (2002).
    • (2002) Mol. Microbiol. , vol.43 , pp. 1445-1456
    • Lee, K.1    Bernstein, J.A.2    Cohen, S.N.3
  • 8
    • 0017887243 scopus 로고
    • Conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA
    • Apirion, D. & Lassar, A. B. Conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA. J. Biol. Chem. 253, 1738-1742 (1978).
    • (1978) J. Biol. Chem. , vol.253 , pp. 1738-1742
    • Apirion, D.1    Lassar, A.B.2
  • 9
    • 0017697982 scopus 로고
    • Gene affecting longevity of messenger RNA: Mutant of Escherichia coli with altered messenger RNA stability
    • Kuwano, M. et al. Gene affecting longevity of messenger RNA: Mutant of Escherichia coli with altered messenger RNA stability. Mol. Gen. Genet. 154, 279-285 (1977).
    • (1977) Mol. Gen. Genet. , vol.154 , pp. 279-285
    • Kuwano, M.1
  • 10
    • 0037115876 scopus 로고    scopus 로고
    • The phylogenetic distribution of bacterial ribonucleases
    • Condon, C. & Putzer, H. The phylogenetic distribution of bacterial ribonucleases. Nucleic Acids Res. 30, 5339-5346 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 5339-5346
    • Condon, C.1    Putzer, H.2
  • 11
    • 59649127625 scopus 로고    scopus 로고
    • A phylogenetic view of bacterial ribonucleases
    • Condon, C. (ed.) Academic Press, Elsevier Inc
    • Danchin, A. A phylogenetic view of bacterial ribonucleases. Molecular Biology of RNA Processing and Decay in Prokaryotes. Condon, C. (ed.) 85, 1-41 (Academic Press, Elsevier Inc, 2009).
    • (2009) Molecular Biology of RNA Processing and Decay in Prokaryotes , vol.85 , pp. 1-41
    • Danchin, A.1
  • 12
    • 79953097421 scopus 로고    scopus 로고
    • Composition and conservation of the mRNA-degrading machinery in bacteria
    • Kaberdin, V. R., Singh, D. & Lin-Chao, S. Composition and conservation of the mRNA-degrading machinery in bacteria. J. Biomed. Sci. 18, 23 (2011).
    • (2011) J. Biomed. Sci. , vol.18 , pp. 23
    • Kaberdin, V.R.1    Singh, D.2    Lin-Chao, S.3
  • 13
    • 54249138245 scopus 로고    scopus 로고
    • The RNase E of escherichia coli is a membrane-binding protein
    • Khemici, V., Poljak, L., Luisi, B. F. & Carpousis, A. J. The RNase E of Escherichia coli is a membrane-binding protein. Mol. Microbiol. 70, 799-813 (2008).
    • (2008) Mol. Microbiol. , vol.70 , pp. 799-813
    • Khemici, V.1    Poljak, L.2    Luisi, B.F.3    Carpousis, A.J.4
  • 14
    • 0344412947 scopus 로고    scopus 로고
    • Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain
    • Callaghan, A. J. et al.Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain. Biochemistry 42, 13848-13855 (2003).
    • (2003) Biochemistry , vol.42 , pp. 13848-13855
    • Callaghan, A.J.1
  • 15
    • 20144381893 scopus 로고    scopus 로고
    • "Zn-Link": A metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E
    • Callaghan, A. J. et al. "Zn-Link": A metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E. Biochemistry 44, 4667-4675 (2005).
    • (2005) Biochemistry , vol.44 , pp. 4667-4675
    • Callaghan, A.J.1
  • 16
    • 27144495430 scopus 로고    scopus 로고
    • Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover
    • Callaghan, A. J. et al. Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover. Nature 437, 1187-1191 (2005).
    • (2005) Nature , vol.437 , pp. 1187-1191
    • Callaghan, A.J.1
  • 17
    • 0032531768 scopus 로고    scopus 로고
    • Ribonuclease E is a 59-end-dependent endonuclease
    • Mackie, G. A. Ribonuclease E is a 59-end-dependent endonuclease. Nature 395, 720-723 (1998).
    • (1998) Nature , vol.395 , pp. 720-723
    • Mackie, G.A.1
  • 18
    • 0020671323 scopus 로고
    • Structure and functions of ribosomal protein-S1
    • Subramanian, A. R. Structure and Functions of Ribosomal Protein-S1. Prog. Nucleic Acid Res. Mol. Biol. 28, 101-142 (1983).
    • (1983) Prog. Nucleic Acid Res. Mol. Biol. , vol.28 , pp. 101-142
    • Subramanian, A.R.1
  • 19
    • 0022476864 scopus 로고
    • Structure of DNase I at 2.0 A resolution suggests a mechanism for binding to and cutting DNA
    • Suck, D. & Oefner, C. Structure of DNase I at 2.0 A resolution suggests a mechanism for binding to and cutting DNA. Nature 321, 620-625 (1986).
    • (1986) Nature , vol.321 , pp. 620-625
    • Suck, D.1    Oefner, C.2
  • 20
    • 77951539769 scopus 로고    scopus 로고
    • Rapid cleavage of RNA by RNase E in the absence of 59 monophosphate stimulation
    • Kime, L., Jourdan, S. S., Stead, J. A., Hidalgo-Sastre, A. & McDowall, K. J. Rapid cleavage of RNA by RNase E in the absence of 59 monophosphate stimulation. Mol. Microbiol. 76, 590-604 (2010).
    • (2010) Mol. Microbiol. , vol.76 , pp. 590-604
    • Kime, L.1    Jourdan, S.S.2    Stead, J.A.3    Hidalgo-Sastre, A.4    McDowall, K.J.5
  • 21
    • 84898986431 scopus 로고    scopus 로고
    • Adjacent single-stranded regions mediate processing of tRNA precursors by RNase E direct entry
    • Kime, L., Clarke, J. E., Romero, A. D., Grasby, J. A. & McDowall, K. J. Adjacent single-stranded regions mediate processing of tRNA precursors by RNase E direct entry. Nucleic Acids Res. 42, 4577-4589 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. 4577-4589
    • Kime, L.1    Clarke, J.E.2    Romero, A.D.3    Grasby, J.A.4    McDowall, K.J.5
  • 22
    • 70450230359 scopus 로고    scopus 로고
    • Substrate binding and active site residues in RNases E and G: Role of the 59 sensor
    • Garrey, S. M. et al. Substrate binding and active site residues in RNases E and G: role of the 59 sensor. J. Biol. Chem. 284, 31843-31850 (2009).
    • (2009) J. Biol. Chem. , vol.284 , pp. 31843-31850
    • Garrey, S.M.1
  • 23
    • 0035339671 scopus 로고    scopus 로고
    • Cleavage of poly(A) tails on the 39 end of RNAby ribonuclease E of Escherichia coli
    • Walsh, A. P. et al. Cleavage of poly(A) tails on the 39 end of RNAby ribonuclease E of Escherichia coli. Nucleic Acids Res. 29, 1864-1871 (2001).
    • (2001) Nucleic Acids Res. , vol.29 , pp. 1864-1871
    • Walsh, A.P.1
  • 24
    • 0018333032 scopus 로고
    • 5S ribosomal RNA is contained within a 25S ribosomal RNA that accumulates in mutants of Escherichia coli defective in processing of ribosomal RNA
    • Ghora, B. K. & Apirion, D. 5S ribosomal RNA is contained within a 25S ribosomal RNA that accumulates in mutants of Escherichia coli defective in processing of ribosomal RNA. J. Mol. Biol. 127, 507-513 (1979).
    • (1979) J. Mol. Biol. , vol.127 , pp. 507-513
    • Ghora, B.K.1    Apirion, D.2
  • 25
    • 0018791193 scopus 로고
    • Conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA
    • Ono, M. & Kuwano, M. Conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA. J. Mol. Biol. 129, 343-357 (1979).
    • (1979) J. Mol. Biol. , vol.129 , pp. 343-357
    • Ono, M.1    Kuwano, M.2
  • 26
    • 0027273009 scopus 로고
    • The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus
    • McDowall, K. J., Hernandez, R. G., Lin-Chao, S. & Cohen, S. N. The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus. J. Bacteriol. 175, 4245-4249 (1993).
    • (1993) J. Bacteriol. , vol.175 , pp. 4245-4249
    • McDowall, K.J.1    Hernandez, R.G.2    Lin-Chao, S.3    Cohen, S.N.4
  • 27
    • 0036197752 scopus 로고    scopus 로고
    • RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters
    • Ow, M. C. et al. RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters. Mol. Microbiol. 43, 159-171 (2002).
    • (2002) Mol. Microbiol. , vol.43 , pp. 159-171
    • Ow, M.C.1
  • 28
    • 39149140707 scopus 로고    scopus 로고
    • Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli
    • Mohanty, B. K. & Kushner, S. R. Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli. Nucleic Acids Res. 36, 364-375 (2008).
    • (2008) Nucleic Acids Res. , vol.36 , pp. 364-375
    • Mohanty, B.K.1    Kushner, S.R.2
  • 29
    • 35548995356 scopus 로고    scopus 로고
    • The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase E
    • Carpousis, A. J. The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase E. Annu. Rev. Microbiol. 61, 71-87 (2007).
    • (2007) Annu. Rev. Microbiol. , vol.61 , pp. 71-87
    • Carpousis, A.J.1
  • 32
    • 0028075037 scopus 로고
    • A novel fluorogenic substrate for ribonucleases: Synthesis and enzymatic characterization
    • Zelenko, O. et al. A novel fluorogenic substrate for ribonucleases: Synthesis and enzymatic characterization. Nucleic Acids Res. 22, 2731-2739 (1994).
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2731-2739
    • Zelenko, O.1
  • 33
    • 3042645502 scopus 로고    scopus 로고
    • Catalytic activation of multimeric RNase E and RNase G by 59-monophosphorylated RNA
    • Jiang, X. Q. & Belasco, J. G. Catalytic activation of multimeric RNase E and RNase G by 59-monophosphorylated RNA. Proc. Natl. Acad. Sci. USA 101, 9211-9216 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 9211-9216
    • Jiang, X.Q.1    Belasco, J.G.2
  • 34
    • 5644236834 scopus 로고    scopus 로고
    • Pharmacophore modeling and three dimensional database searching for drug design using catalyst: Recent advances
    • Guner, O., Clement, O. & Kurogi, Y. Pharmacophore modeling and three dimensional database searching for drug design using catalyst: Recent advances. Curr. Med. Chem. 11, 2991-3005 (2004).
    • (2004) Curr. Med. Chem. , vol.11 , pp. 2991-3005
    • Guner, O.1    Clement, O.2    Kurogi, Y.3
  • 35
    • 34249092941 scopus 로고    scopus 로고
    • Virtual high-throughput screening of molecular databases
    • Seifert, M. H. J., Kraus, J. & Kramer, B. Virtual high-throughput screening of molecular databases. Curr. Opin. Drug Di. De. 10, 298-307 (2007).
    • (2007) Curr. Opin. Drug Di. De. , vol.10 , pp. 298-307
    • Seifert, M.H.J.1    Kraus, J.2    Kramer, B.3
  • 36
    • 11144323163 scopus 로고    scopus 로고
    • Virtual screening of chemical libraries
    • Shoichet, B. K. Virtual screening of chemical libraries. Nature 432, 862-865 (2004).
    • (2004) Nature , vol.432 , pp. 862-865
    • Shoichet, B.K.1
  • 37
    • 0028167547 scopus 로고
    • SPROUT: Recent developments in the de novo design of molecules
    • Gillet, V. J. et al. SPROUT: Recent developments in the de novo design of molecules. J. Chem. Inf. Comput. Sci. 34, 207-217 (1994).
    • (1994) J. Chem. Inf. Comput. Sci. , vol.34 , pp. 207-217
    • Gillet, V.J.1
  • 39
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • Guex, N. & Peitsch, M. C. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 18, 2714-2723 (1997).
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 40
    • 36849032886 scopus 로고    scopus 로고
    • Sensing of 59 monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo
    • Jourdan, S. S. &McDowall, K. J. Sensing of 59 monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo. Mol. Microbiol. 67, 102-115 (2008).
    • (2008) Mol. Microbiol. , vol.67 , pp. 102-115
    • Jourdan, S.S.1    McDowall, K.J.2
  • 41
    • 0242666860 scopus 로고    scopus 로고
    • Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease E and the identification of critical functional groups in RNA substrates
    • Redko, Y. et al.Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease E and the identification of critical functional groups in RNA substrates. J. Biol. Chem. 278, 44001-44008 (2003).
    • (2003) J. Biol. Chem. , vol.278 , pp. 44001-44008
    • Redko, Y.1
  • 42
    • 77952326903 scopus 로고    scopus 로고
    • The population dynamics and control of tuberculosis
    • Dye, C. & Williams, B. G. The population dynamics and control of tuberculosis. Science 328, 856-861 (2010).
    • (2010) Science , vol.328 , pp. 856-861
    • Dye, C.1    Williams, B.G.2
  • 43
    • 79251589638 scopus 로고    scopus 로고
    • The challenge of new drug discovery for tuberculosis
    • Koul, A., Arnoult, E., Lounis, N., Guillemont, J. & Andries, K. The challenge of new drug discovery for tuberculosis. Nature 469, 483-490 (2011).
    • (2011) Nature , vol.469 , pp. 483-490
    • Koul, A.1    Arnoult, E.2    Lounis, N.3    Guillemont, J.4    Andries, K.5
  • 44
    • 0028987956 scopus 로고
    • Sitespecific RNase E cleavage of oligonucleotides and inhibition by stem-loops
    • McDowall, K. J., Kaberdin, V. R., Wu, S. W., Cohen, S. N. & Lin-Chao, S. Sitespecific RNase E cleavage of oligonucleotides and inhibition by stem-loops. Nature 374, 287-290 (1995).
    • (1995) Nature , vol.374 , pp. 287-290
    • McDowall, K.J.1    Kaberdin, V.R.2    Wu, S.W.3    Cohen, S.N.4    Lin-Chao, S.5


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