메뉴 건너뛰기




Volumn 21, Issue 3, 2015, Pages 375-384

A deeply conserved, noncanonical miRNA hosted by ribosomal DNA

Author keywords

miRNA; Noncanonical miRNA processing; Repetitive sequence; Ribosomal RNA

Indexed keywords

INTERNAL TRANSCRIBED SPACER 1; MICRORNA; RIBOSOME DNA; DICER-1 PROTEIN, DROSOPHILA; DROSHA PROTEIN, DROSOPHILA; DROSOPHILA PROTEIN; PASHA PROTEIN, DROSOPHILA; RIBONUCLEASE III; RNA BINDING PROTEIN; RNA HELICASE; SMALL INTERFERING RNA;

EID: 84923011435     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.049098.114     Document Type: Article
Times cited : (39)

References (56)
  • 1
    • 0033711242 scopus 로고    scopus 로고
    • Conserved sequence patterns in the non-coding ribosomal ITS-1 of distantly related snail taxa
    • Armbruster GFJ, van Moorsel CHM, Gittenberger E. 2000. Conserved sequence patterns in the non-coding ribosomal ITS-1 of distantly related snail taxa. J Molluscan Stud 66: 570-573.
    • (2000) J Molluscan Stud , vol.66 , pp. 570-573
    • Armbruster, G.F.J.1    Van Moorsel, C.H.M.2    Gittenberger, E.3
  • 2
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: Target recognition and regulatory functions
    • Bartel DP. 2009. MicroRNAs: Target recognition and regulatory functions. Cell 136: 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 5
    • 0021723167 scopus 로고
    • Molecular evolution in Drosophila and the higher Diptera II. A time scale for fly evolution
    • Beverley SM, Wilson AC. 1984. Molecular evolution in Drosophila and the higher Diptera II. A time scale for fly evolution. J Mol Evol 21: 1-13.
    • (1984) J Mol Evol , vol.21 , pp. 1-13
    • Beverley, S.M.1    Wilson, A.C.2
  • 6
    • 80052394416 scopus 로고    scopus 로고
    • Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes
    • Bierhoff H, Schmitz K, Maass F, Ye J, Grummt I. 2010. Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes. Cold Spring Harb Symp Quant Biol 75: 357-364.
    • (2010) Cold Spring Harb Symp Quant Biol , vol.75 , pp. 357-364
    • Bierhoff, H.1    Schmitz, K.2    Maass, F.3    Ye, J.4    Grummt, I.5
  • 8
    • 0028185370 scopus 로고
    • Evolutionary conservation of the transcribed spacer sequences of the rDNA repeat unit in three species of the genus Aspergillus
    • Borsuk P, Gniadkowski M, Kucharski R, Bisko M, Kanabus M, Stepien PP, Bartnik E. 1994. Evolutionary conservation of the transcribed spacer sequences of the rDNA repeat unit in three species of the genus Aspergillus. Acta Biochim Pol 41: 73-77.
    • (1994) Acta Biochim Pol , vol.41 , pp. 73-77
    • Borsuk, P.1    Gniadkowski, M.2    Kucharski, R.3    Bisko, M.4    Kanabus, M.5    Stepien, P.P.6    Bartnik, E.7
  • 11
    • 84876374428 scopus 로고    scopus 로고
    • Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
    • Castellano L, Stebbing J. 2013. Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues. Nucleic Acids Res 41: 3339-3351.
    • (2013) Nucleic Acids Res , vol.41 , pp. 3339-3351
    • Castellano, L.1    Stebbing, J.2
  • 13
    • 84873861006 scopus 로고    scopus 로고
    • Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice
    • Chen H, Kobayashi K, Miyao A, Hirochika H, Yamaoka N, Nishiguchi M. 2013. Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice. PLoS One 8: e55252.
    • (2013) PLoS One , vol.8
    • Chen, H.1    Kobayashi, K.2    Miyao, A.3    Hirochika, H.4    Yamaoka, N.5    Nishiguchi, M.6
  • 14
    • 78650306521 scopus 로고    scopus 로고
    • Small RNA sorting: Matchmaking for Argonautes
    • Czech B, Hannon GJ. 2011. Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet 12: 19-31.
    • (2011) Nat Rev Genet , vol.12 , pp. 19-31
    • Czech, B.1    Hannon, G.J.2
  • 17
    • 2142754126 scopus 로고    scopus 로고
    • Ribosome biogenesis: Of knobs and RNA processing
    • Granneman S, Baserga SJ. 2004. Ribosome biogenesis: of knobs and RNA processing. Exp Cell Res 296: 43-50.
    • (2004) Exp Cell Res , vol.296 , pp. 43-50
    • Granneman, S.1    Baserga, S.J.2
  • 23
    • 84891818318 scopus 로고    scopus 로고
    • miRBase: Annotating high confidence microRNAs using deep sequencing data
    • Kozomara A, Griffiths-Jones S. 2014. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res 42: D68-D73.
    • (2014) Nucleic Acids Res , vol.42 , pp. D68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 24
    • 0023445932 scopus 로고
    • A novel promoter in the mouse rDNA spacer is active in vivo and in vitro
    • Kuhn A, Grummt I. 1987. A novel promoter in the mouse rDNA spacer is active in vivo and in vitro. EMBO J 6: 3487-3492.
    • (1987) EMBO J , vol.6 , pp. 3487-3492
    • Kuhn, A.1    Grummt, I.2
  • 26
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10 , pp. 25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 30
    • 0018814593 scopus 로고
    • Repeated genes in eukaryotes
    • Long EO, Dawid IB. 1980. Repeated genes in eukaryotes. Annu Rev Biochem 49: 727-764.
    • (1980) Annu Rev Biochem , vol.49 , pp. 727-764
    • Long, E.O.1    Dawid, I.B.2
  • 33
    • 33646147563 scopus 로고    scopus 로고
    • Intergenic transcripts regulate the epigenetic state of rRNA genes
    • Mayer C, Schmitz KM, Li J, Grummt I, Santoro R. 2006. Intergenic transcripts regulate the epigenetic state of rRNA genes. Mol Cell 22: 351-361.
    • (2006) Mol Cell , vol.22 , pp. 351-361
    • Mayer, C.1    Schmitz, K.M.2    Li, J.3    Grummt, I.4    Santoro, R.5
  • 34
    • 0021022862 scopus 로고
    • Transcription in cloned spacers of Xenopus laevis ribosomal DNA
    • Morgan GT, Reeder RH, Bakken AH. 1983. Transcription in cloned spacers of Xenopus laevis ribosomal DNA. Proc Natl Acad Sci 80: 6490-6494.
    • (1983) Proc Natl Acad Sci , vol.80 , pp. 6490-6494
    • Morgan, G.T.1    Reeder, R.H.2    Bakken, A.H.3
  • 37
    • 50149095122 scopus 로고    scopus 로고
    • Endogenous small interfering RNAs in animals
    • Okamura K, Lai EC. 2008. Endogenous small interfering RNAs in animals. Nat Rev Mol Cell Biol 9: 673-678.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 673-678
    • Okamura, K.1    Lai, E.C.2
  • 38
    • 44349084754 scopus 로고    scopus 로고
    • The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs
    • Okamura K, Chung W-J, Ruby JG, Guo H, Bartel DP, Lai EC. 2008. The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs. Nature 453: 803-806.
    • (2008) Nature , vol.453 , pp. 803-806
    • Okamura, K.1    Chung, W.-J.2    Ruby, J.G.3    Guo, H.4    Bartel, D.P.5    Lai, E.C.6
  • 39
    • 79251558104 scopus 로고    scopus 로고
    • R2D2 organizes small regulatory RNA pathways in Drosophila
    • Okamura K, Robine N, Liu Y, Liu Q, Lai EC. 2011. R2D2 organizes small regulatory RNA pathways in Drosophila. Mol Cell Biol 31: 884-896.
    • (2011) Mol Cell Biol , vol.31 , pp. 884-896
    • Okamura, K.1    Robine, N.2    Liu, Y.3    Liu, Q.4    Lai, E.C.5
  • 40
    • 84876351771 scopus 로고    scopus 로고
    • Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals
    • Okamura K, Ladewig E, Zhou L, Lai EC. 2013. Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals. Genes Dev 27: 778-792.
    • (2013) Genes Dev , vol.27 , pp. 778-792
    • Okamura, K.1    Ladewig, E.2    Zhou, L.3    Lai, E.C.4
  • 41
    • 0029008308 scopus 로고
    • Stimulation of the mouse rRNA gene promoter by a distal spacer promoter
    • Paalman MH, Henderson SL, Sollner-Webb B. 1995. Stimulation of the mouse rRNA gene promoter by a distal spacer promoter. Mol Cell Biol 15: 4648-4656.
    • (1995) Mol Cell Biol , vol.15 , pp. 4648-4656
    • Paalman, M.H.1    Henderson, S.L.2    Sollner-Webb, B.3
  • 42
    • 33845866637 scopus 로고    scopus 로고
    • H3K9 methylation and RNA interference regulate nucleolar organization and repeated DNA stability
    • Peng JC, Karpen GH. 2007. H3K9 methylation and RNA interference regulate nucleolar organization and repeated DNA stability. Nat Cell Biol 9: 25-35.
    • (2007) Nat Cell Biol , vol.9 , pp. 25-35
    • Peng, J.C.1    Karpen, G.H.2
  • 43
    • 84875422712 scopus 로고    scopus 로고
    • Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2
    • Polikepahad S, Corry DB. 2013. Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2. Nucleic Acids Res 41: 1164-1177.
    • (2013) Nucleic Acids Res , vol.41 , pp. 1164-1177
    • Polikepahad, S.1    Corry, D.B.2
  • 44
  • 45
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 46
    • 0028266426 scopus 로고
    • Comparative evolutionary analysis of rDNA ITS regions in Drosophila
    • Schlotterer C, Hauser MT, von Haeseler A, Tautz D. 1994. Comparative evolutionary analysis of rDNA ITS regions in Drosophila. Mol Biol Evol 11: 513-522.
    • (1994) Mol Biol Evol , vol.11 , pp. 513-522
    • Schlotterer, C.1    Hauser, M.T.2    Von Haeseler, A.3    Tautz, D.4
  • 48
    • 79960925156 scopus 로고    scopus 로고
    • The cancerous translation apparatus
    • Stumpf CR, Ruggero D. 2011. The cancerous translation apparatus. Curr Opin Genet Dev 21: 474-483.
    • (2011) Curr Opin Genet Dev , vol.21 , pp. 474-483
    • Stumpf, C.R.1    Ruggero, D.2
  • 52
    • 84873905119 scopus 로고    scopus 로고
    • Profiling and identification of small rDNA-derived RNAs and their potential biological functions
    • Wei H, Zhou B, Zhang F, Tu Y, Hu Y, Zhang B, Zhai Q. 2013. Profiling and identification of small rDNA-derived RNAs and their potential biological functions. PLoS One 8: e56842.
    • (2013) PLoS One , vol.8
    • Wei, H.1    Zhou, B.2    Zhang, F.3    Tu, Y.4    Hu, Y.5    Zhang, B.6    Zhai, Q.7
  • 56
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.