메뉴 건너뛰기




Volumn 3, Issue , 2015, Pages 63-69

Identification and profiling of conserved and novel microRNAs in Laodelphax striatellus in response to rice black-streaked dwarf virus (RBSDV) infection

Author keywords

Deep sequencing; Laodelphax striatellus; MicroRNA (miRNA); Rice black streaked dwarf virus (RBSDV)

Indexed keywords

MICRORNA;

EID: 84922920125     PISSN: 22135960     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gdata.2014.08.010     Document Type: Article
Times cited : (24)

References (40)
  • 1
    • 77956170809 scopus 로고    scopus 로고
    • RNA-based antiviral immunity
    • Ding S.W. RNA-based antiviral immunity. Nat. Rev. Immunol. 2010, 10:632-644.
    • (2010) Nat. Rev. Immunol. , vol.10 , pp. 632-644
    • Ding, S.W.1
  • 2
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • Carrington J.C., Ambros V. Role of microRNAs in plant and animal development. Science 2003, 301:336-338.
    • (2003) Science , vol.301 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 3
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 4
    • 61849137222 scopus 로고    scopus 로고
    • Many roads to maturity: microRNA biogenesis pathways and their regulation
    • Winter J., Jung S., Keller S., Gregory R.I., Diederichs S. Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat. Cell Biol. 2009, 11:228-234.
    • (2009) Nat. Cell Biol. , vol.11 , pp. 228-234
    • Winter, J.1    Jung, S.2    Keller, S.3    Gregory, R.I.4    Diederichs, S.5
  • 7
    • 77957938117 scopus 로고    scopus 로고
    • Viruses, microRNAs, and host interactions
    • Skalsky R.L., Cullen B.R. Viruses, microRNAs, and host interactions. Annu. Rev. Microbiol. 2010, 64:123-141.
    • (2010) Annu. Rev. Microbiol. , vol.64 , pp. 123-141
    • Skalsky, R.L.1    Cullen, B.R.2
  • 8
    • 55049086337 scopus 로고    scopus 로고
    • The roles of microRNAs in mammalian virus infection
    • Grassmann R., Jeang K.T. The roles of microRNAs in mammalian virus infection. Biochim. Biophys. Acta 2008, 1779:706-711.
    • (2008) Biochim. Biophys. Acta , vol.1779 , pp. 706-711
    • Grassmann, R.1    Jeang, K.T.2
  • 9
    • 63649146590 scopus 로고    scopus 로고
    • Cellular versus viral microRNAs in host-virus interaction
    • Ghosh Z., Mallick B., Chakrabarti J. Cellular versus viral microRNAs in host-virus interaction. Nucleic Acids Res. 2009, 37:1035-1048.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1035-1048
    • Ghosh, Z.1    Mallick, B.2    Chakrabarti, J.3
  • 10
    • 61349100846 scopus 로고    scopus 로고
    • MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals
    • Houzet L., Yeung M.L., de Lame V., Desai D., Smith S.M., Jeang K.T. MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals. Retrovirology 2008, 5:118.
    • (2008) Retrovirology , vol.5 , pp. 118
    • Houzet, L.1    Yeung, M.L.2    de Lame, V.3    Desai, D.4    Smith, S.M.5    Jeang, K.T.6
  • 11
    • 84891683058 scopus 로고    scopus 로고
    • Expression profile of microRNAs in Epstein-Barr virus-infected AGS gastric carcinoma cells
    • Marquitz A.R., Mathur A., Chugh P.E., Dittmer D.P., Raab-Traub N. Expression profile of microRNAs in Epstein-Barr virus-infected AGS gastric carcinoma cells. J. Virol. 2014, 88:1389-1393.
    • (2014) J. Virol. , vol.88 , pp. 1389-1393
    • Marquitz, A.R.1    Mathur, A.2    Chugh, P.E.3    Dittmer, D.P.4    Raab-Traub, N.5
  • 12
    • 84893753522 scopus 로고    scopus 로고
    • Next generation sequencing reveals regulation of distinct Aedes microRNAs during chikungunya virus development
    • Shrinet J., Jain S., Jain J., Bhatnagar R.K., Sunil S. Next generation sequencing reveals regulation of distinct Aedes microRNAs during chikungunya virus development. PLoS Negl. Trop. Dis. 2014, 8:e2616.
    • (2014) PLoS Negl. Trop. Dis. , vol.8 , pp. e2616
    • Shrinet, J.1    Jain, S.2    Jain, J.3    Bhatnagar, R.K.4    Sunil, S.5
  • 14
    • 0013092312 scopus 로고
    • Studies on insect transmission of rice virus diseases in Japan
    • [14: 1-12]
    • Shinkai A. Studies on insect transmission of rice virus diseases in Japan. Bull. Natl. Inst. Agric. Sci. C 1962, 14:1-112. [14: 1-12].
    • (1962) Bull. Natl. Inst. Agric. Sci. C , vol.14 , pp. 1-112
    • Shinkai, A.1
  • 15
    • 0022812840 scopus 로고
    • Rice stripe virus: prototype of a new group of viruses that replicate in plants and insects
    • Toriyama S. Rice stripe virus: prototype of a new group of viruses that replicate in plants and insects. Microbiol. Sci. 1986, 3:347-351.
    • (1986) Microbiol. Sci. , vol.3 , pp. 347-351
    • Toriyama, S.1
  • 16
    • 84878907811 scopus 로고    scopus 로고
    • Characterization of rice black-streaked dwarf virus- and rice stripe virus-derived siRNAs in singly and doubly infected insect vector Laodelphax striatellus
    • Li J., Andika I.B., Shen J., Lv Y., Ji Y., Sun L., Chen J. Characterization of rice black-streaked dwarf virus- and rice stripe virus-derived siRNAs in singly and doubly infected insect vector Laodelphax striatellus. PLoS ONE 2013, 8:e66007.
    • (2013) PLoS ONE , vol.8 , pp. e66007
    • Li, J.1    Andika, I.B.2    Shen, J.3    Lv, Y.4    Ji, Y.5    Sun, L.6    Chen, J.7
  • 17
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
    • Filipowicz W., Bhattacharyya S.N., Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?. Nat. Rev. Genet. 2008, 9:102-114.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 18
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau N.C., Lim L.P., Weinstein E.G., Bartel D.P. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 2001, 294:858-862.
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 19
    • 60149088848 scopus 로고    scopus 로고
    • Origins and mechanisms of miRNAs and siRNAs
    • Carthew R.W., Sontheimer E.J. Origins and mechanisms of miRNAs and siRNAs. Cell 2009, 136:642-655.
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 20
    • 67649885497 scopus 로고    scopus 로고
    • Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust
    • Wei Y., Chen S., Yang P., Ma Z., Kang L. Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust. Genome Biol. 2009, 10:R6.
    • (2009) Genome Biol. , vol.10 , pp. R6
    • Wei, Y.1    Chen, S.2    Yang, P.3    Ma, Z.4    Kang, L.5
  • 21
    • 77349092849 scopus 로고    scopus 로고
    • Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    • Jagadeeswaran G., Zheng Y., Sumathipala N., Jiang H., Arrese E.L., Soulages J.L., Zhang W., Sunkar R. Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. BMC Genomics 2010, 11:52.
    • (2010) BMC Genomics , vol.11 , pp. 52
    • Jagadeeswaran, G.1    Zheng, Y.2    Sumathipala, N.3    Jiang, H.4    Arrese, E.L.5    Soulages, J.L.6    Zhang, W.7    Sunkar, R.8
  • 22
    • 84863272867 scopus 로고    scopus 로고
    • Characterization and comparative analysis of small RNAs in three small RNA libraries of the brown planthopper (Nilaparvata lugens)
    • Chen Q., Lu L., Hua H., Zhou F., Lin Y. Characterization and comparative analysis of small RNAs in three small RNA libraries of the brown planthopper (Nilaparvata lugens). PLoS ONE 2012, 7:e32860.
    • (2012) PLoS ONE , vol.7 , pp. e32860
    • Chen, Q.1    Lu, L.2    Hua, H.3    Zhou, F.4    Lin, Y.5
  • 23
    • 77949470329 scopus 로고    scopus 로고
    • Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    • Skalsky R.L., Vanlandingham D.L., Scholle F., Higgs S., Cullen B.R. Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus. BMC Genomics 2010, 11:119.
    • (2010) BMC Genomics , vol.11 , pp. 119
    • Skalsky, R.L.1    Vanlandingham, D.L.2    Scholle, F.3    Higgs, S.4    Cullen, B.R.5
  • 24
    • 25844460031 scopus 로고    scopus 로고
    • Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth
    • Sokol N.S., Ambros V. Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth. Genes Dev. 2005, 19:2343-2354.
    • (2005) Genes Dev. , vol.19 , pp. 2343-2354
    • Sokol, N.S.1    Ambros, V.2
  • 25
    • 30044437240 scopus 로고    scopus 로고
    • MicroRNA1 influences cardiac differentiation in Drosophila and regulates Notch signaling
    • Kwon C., Han Z., Olson E.N., Srivastava D. MicroRNA1 influences cardiac differentiation in Drosophila and regulates Notch signaling. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:18986-18991.
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 18986-18991
    • Kwon, C.1    Han, Z.2    Olson, E.N.3    Srivastava, D.4
  • 28
    • 79957578583 scopus 로고    scopus 로고
    • Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments
    • McCormick K.P., Willmann M.R., Meyers B.C. Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments. Silence 2011, 2:2.
    • (2011) Silence , vol.2 , pp. 2
    • McCormick, K.P.1    Willmann, M.R.2    Meyers, B.C.3
  • 29
    • 84891741663 scopus 로고    scopus 로고
    • MicroRNA levels are modulated in Aedes aegypti after exposure to Dengue-2
    • Campbell C.L., Harrison T., Hess A.M., Ebel G.D. MicroRNA levels are modulated in Aedes aegypti after exposure to Dengue-2. Insect Mol. Biol. 2014, 23:132-139.
    • (2014) Insect Mol. Biol. , vol.23 , pp. 132-139
    • Campbell, C.L.1    Harrison, T.2    Hess, A.M.3    Ebel, G.D.4
  • 30
    • 84862161373 scopus 로고    scopus 로고
    • Characterization of host microRNAs that respond to DNA virus infection in a crustacean
    • Huang T., Xu D., Zhang X. Characterization of host microRNAs that respond to DNA virus infection in a crustacean. BMC Genomics 2012, 13:159.
    • (2012) BMC Genomics , vol.13 , pp. 159
    • Huang, T.1    Xu, D.2    Zhang, X.3
  • 31
    • 33748432997 scopus 로고    scopus 로고
    • MicroRNAs in muscle differentiation: lessons from Drosophila and beyond
    • Nguyen H.T., Frasch M. MicroRNAs in muscle differentiation: lessons from Drosophila and beyond. Curr. Opin. Genet. Dev. 2006, 16:533-539.
    • (2006) Curr. Opin. Genet. Dev. , vol.16 , pp. 533-539
    • Nguyen, H.T.1    Frasch, M.2
  • 32
    • 84868260185 scopus 로고    scopus 로고
    • MicroRNA functions in insects
    • Asgari S. MicroRNA functions in insects. Insect Biochem. Mol. Biol. 2013, 43:388-397.
    • (2013) Insect Biochem. Mol. Biol. , vol.43 , pp. 388-397
    • Asgari, S.1
  • 34
    • 10244243802 scopus 로고    scopus 로고
    • Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
    • Bonnet E., Wuyts J., Rouze P., Van de Peer Y. Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 2004, 20:2911-2917.
    • (2004) Bioinformatics , vol.20 , pp. 2911-2917
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van de Peer, Y.4
  • 35
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136:669-687.
    • (2009) Cell , vol.136 , pp. 669-687
    • Voinnet, O.1
  • 36
    • 43149096961 scopus 로고    scopus 로고
    • In silico identification of conserved microRNAs in large number of diverse plant species
    • Sunkar R., Jagadeeswaran G. In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol. 2008, 8:37.
    • (2008) BMC Plant Biol. , vol.8 , pp. 37
    • Sunkar, R.1    Jagadeeswaran, G.2
  • 38
    • 84867391567 scopus 로고    scopus 로고
    • Identification of novel Oryza sativa miRNAs in deep sequencing-based small RNA libraries of rice infected with rice stripe virus
    • Guo W., Wu G., Yan F., Lu Y., Zheng H., Lin L., Chen H., Chen J. Identification of novel Oryza sativa miRNAs in deep sequencing-based small RNA libraries of rice infected with rice stripe virus. PLoS ONE 2012, 7:e46443.
    • (2012) PLoS ONE , vol.7 , pp. e46443
    • Guo, W.1    Wu, G.2    Yan, F.3    Lu, Y.4    Zheng, H.5    Lin, L.6    Chen, H.7    Chen, J.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.