메뉴 건너뛰기




Volumn 7, Issue 3, 2012, Pages

Characterization and comparative analysis of small RNAs in three small RNA libraries of the brown planthopper (nilaparvata lugens)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

EID: 84863272867     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0032860     Document Type: Article
Times cited : (38)

References (55)
  • 1
    • 0034612276 scopus 로고    scopus 로고
    • Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways
    • Clemens JC, Worby CA, Simonson-Leff N, Muda M, Maehama T, et al. (2000) Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways. Proc Natl Acad Sci USA 97: 6499-6503.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6499-6503
    • Clemens, J.C.1    Worby, C.A.2    Simonson-Leff, N.3    Muda, M.4    Maehama, T.5
  • 2
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, et al. (2001) Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411: 494-498.
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5
  • 3
    • 35948967593 scopus 로고    scopus 로고
    • Silencing a cotton bollworm P450 monooxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol
    • Mao YB, Cai WJ, Wang JW, Hong GJ, Tao XY, et al. (2007) Silencing a cotton bollworm P450 monooxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol. Nature Biotechnol 25: 1307-1313.
    • (2007) Nature Biotechnol , vol.25 , pp. 1307-1313
    • Mao, Y.B.1    Cai, W.J.2    Wang, J.W.3    Hong, G.J.4    Tao, X.Y.5
  • 4
    • 78751693009 scopus 로고    scopus 로고
    • Progress in the use of RNA interference as a therapy for chronic hepatitis B virus infection
    • Weinberg MS, Arbuthnot P, (2010) Progress in the use of RNA interference as a therapy for chronic hepatitis B virus infection. Genome Med 2: 28.
    • (2010) Genome Med , vol.2 , pp. 28
    • Weinberg, M.S.1    Arbuthnot, P.2
  • 5
    • 58749113430 scopus 로고    scopus 로고
    • A three-dimensional view of the molecular machinery of RNA interference
    • Jinek M, Doudna JA, (2009) A three-dimensional view of the molecular machinery of RNA interference. Nature 457: 405-412.
    • (2009) Nature , vol.457 , pp. 405-412
    • Jinek, M.1    Doudna, J.A.2
  • 8
    • 76649099558 scopus 로고    scopus 로고
    • The many roles of small RNAs in leaf development
    • Kidner CA, (2010) The many roles of small RNAs in leaf development. J Genet Genomics 37: 13-21.
    • (2010) J Genet Genomics , vol.37 , pp. 13-21
    • Kidner, C.A.1
  • 9
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP, (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 11
    • 76749146937 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum
    • Hao LL, Cai PF, Jiang N, Wang H, Chen QJ, (2010) Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum. BMC Genomics 11: 55.
    • (2010) BMC Genomics , vol.11 , pp. 55
    • Hao, L.L.1    Cai, P.F.2    Jiang, N.3    Wang, H.4    Chen, Q.J.5
  • 13
    • 78650514497 scopus 로고    scopus 로고
    • siRNAs from miRNA sites mediate DNA methylation of target genes
    • Chellappan P, Xia J, Zhou XF, Gao S, Zhang XM, et al. (2010) siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acids Res 38: 6883-6894.
    • (2010) Nucleic Acids Res , vol.38 , pp. 6883-6894
    • Chellappan, P.1    Xia, J.2    Zhou, X.F.3    Gao, S.4    Zhang, X.M.5
  • 14
    • 33947731008 scopus 로고    scopus 로고
    • Mighty piwis defend the germline against Genome intruders
    • O'Donnell KA, Boekel JD, (2007) Mighty piwis defend the germline against Genome intruders. Cell 129: 37-44.
    • (2007) Cell , vol.129 , pp. 37-44
    • O'Donnell, K.A.1    Boekel, J.D.2
  • 15
    • 77957775830 scopus 로고    scopus 로고
    • Somatic piRNA biogenesis
    • Zamore PD, (2010) Somatic piRNA biogenesis. Embo J 29: 3219-3221.
    • (2010) Embo J , vol.29 , pp. 3219-3221
    • Zamore, P.D.1
  • 16
    • 77957793321 scopus 로고    scopus 로고
    • An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila
    • Olivieri D, Sykora MM, Sachidanandam R, Mechtler K, Brennecke J, (2010) An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila. Embo J 29: 3301-3317.
    • (2010) Embo J , vol.29 , pp. 3301-3317
    • Olivieri, D.1    Sykora, M.M.2    Sachidanandam, R.3    Mechtler, K.4    Brennecke, J.5
  • 17
    • 40549096693 scopus 로고    scopus 로고
    • Circadian regulation of a limited set of conserved microRNAs in Drosophila
    • Yang M, (2008) Circadian regulation of a limited set of conserved microRNAs in Drosophila. BMC Genomics 9: 83.
    • (2008) BMC Genomics , vol.9 , pp. 83
    • Yang, M.1
  • 18
    • 77950433105 scopus 로고    scopus 로고
    • MicroRNAs of Bombyx mori identified by Solexa sequencing
    • Liu S, (2010) MicroRNAs of Bombyx mori identified by Solexa sequencing. BMC Genomics 11: 148.
    • (2010) BMC Genomics , vol.11 , pp. 148
    • Liu, S.1
  • 19
    • 78449292347 scopus 로고    scopus 로고
    • Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    • Chen X, (2010) Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera. Insect Mol Biol 19 (6): 799-805.
    • (2010) Insect Mol Biol , vol.19 , Issue.6 , pp. 799-805
    • Chen, X.1
  • 20
    • 77958474656 scopus 로고    scopus 로고
    • Functional Shifts in Insect microRNA Evolution
    • Marco A, (2010) Functional Shifts in Insect microRNA Evolution. Genome Biol Evol 2: 686-696.
    • (2010) Genome Biol Evol , vol.2 , pp. 686-696
    • Marco, A.1
  • 21
    • 45749155980 scopus 로고    scopus 로고
    • Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi
    • doi:10.1186/1471-2164-9-244
    • Mead EA, Tu ZJ, (2008) Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi. BMC Genomics 2008 9: 244 doi:10.1186/1471-2164-9-244: 13.
    • (2008) BMC Genomics 2008 , vol.9 , pp. 244
    • Mead, E.A.1    Tu, Z.J.2
  • 22
    • 77951837105 scopus 로고    scopus 로고
    • Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    • Legeai F, (2010) Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum. BMC Genomics 11: 281.
    • (2010) BMC Genomics , vol.11 , pp. 281
    • Legeai, F.1
  • 23
    • 67649885497 scopus 로고    scopus 로고
    • Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust
    • Wei YY, Chen S, Yang PC, Ma ZY, Kang L, (2009) Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust. Genome Biol 10: R6.1-R6.18.
    • (2009) Genome Biol , vol.10 , pp. 1-18
    • Wei, Y.Y.1    Chen, S.2    Yang, P.C.3    Ma, Z.Y.4    Kang, L.5
  • 24
    • 49749117984 scopus 로고    scopus 로고
    • Effect of dengue vector control interventions on entomological parameters in developing countries: a systematic review and meta-analysis
    • Erlanger TE, Keiser J, Utzinger J, (2008) Effect of dengue vector control interventions on entomological parameters in developing countries: a systematic review and meta-analysis. Med Vet Entomol 22: 203-221.
    • (2008) Med Vet Entomol , vol.22 , pp. 203-221
    • Erlanger, T.E.1    Keiser, J.2    Utzinger, J.3
  • 25
    • 78449299654 scopus 로고    scopus 로고
    • Feeding-based RNA interference of a trehalose phosphate synthase gene in the brown planthopper, Nilaparvata lugens
    • Chen J, Zhang D, Yao Q, Zhang J, Dong X, et al. (2010) Feeding-based RNA interference of a trehalose phosphate synthase gene in the brown planthopper, Nilaparvata lugens. Insect Mol Biol 19: 777-786.
    • (2010) Insect Mol Biol , vol.19 , pp. 777-786
    • Chen, J.1    Zhang, D.2    Yao, Q.3    Zhang, J.4    Dong, X.5
  • 26
    • 79958860044 scopus 로고    scopus 로고
    • RNA interference in Nilaparvata lugens (Homoptera: Delphacidae) based on dsRNA ingestion
    • Li J, Chen QH, Lin YJ, Jiang TR, Wu G, et al. (2011) RNA interference in Nilaparvata lugens (Homoptera: Delphacidae) based on dsRNA ingestion. Pest Manag Sci 67: 852-859.
    • (2011) Pest Manag Sci , vol.67 , pp. 852-859
    • Li, J.1    Chen, Q.H.2    Lin, Y.J.3    Jiang, T.R.4    Wu, G.5
  • 27
    • 77349092849 scopus 로고    scopus 로고
    • Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    • Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang HB, Arrese EL, et al. (2010) Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. BMC Genomics 11: 52.
    • (2010) BMC Genomics , vol.11 , pp. 52
    • Jagadeeswaran, G.1    Zheng, Y.2    Sumathipala, N.3    Jiang, H.B.4    Arrese, E.L.5
  • 28
    • 74049164557 scopus 로고    scopus 로고
    • Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
    • Chen X, Li QB, Wang J, Guo X, Jiang XR, et al. (2009) Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol 10: R78.1-R78.13.
    • (2009) Genome Biol , vol.10 , pp. 1-13
    • Chen, X.1    Li, Q.B.2    Wang, J.3    Guo, X.4    Jiang, X.R.5
  • 29
    • 78649679968 scopus 로고    scopus 로고
    • piRNAs, transposon silencing, and Drosophila germline development
    • Khurana JS, Theurkauf W, (2010) piRNAs, transposon silencing, and Drosophila germline development. J Cell Biol 191: 905-913.
    • (2010) J Cell Biol , vol.191 , pp. 905-913
    • Khurana, J.S.1    Theurkauf, W.2
  • 30
    • 70149088059 scopus 로고    scopus 로고
    • Transposon Silencing by piRNAs
    • Halic M, Moazed D, (2009) Transposon Silencing by piRNAs. Cell 138: 1058-1060.
    • (2009) Cell , vol.138 , pp. 1058-1060
    • Halic, M.1    Moazed, D.2
  • 31
    • 44349104241 scopus 로고    scopus 로고
    • An endogenous small interfering RNA pathway in Drosophila
    • Czech B, Malone CD, Zhou R, Stark A, Schlingeheyde C, et al. (2008) An endogenous small interfering RNA pathway in Drosophila. Nature 453: 798-802.
    • (2008) Nature , vol.453 , pp. 798-802
    • Czech, B.1    Malone, C.D.2    Zhou, R.3    Stark, A.4    Schlingeheyde, C.5
  • 32
    • 44349130233 scopus 로고    scopus 로고
    • Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
    • Watanabe T, Totoki Y, Toyoda A, Kaneda M, Kuramochi-Miyagawa S, et al. (2008) Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 453: 539-543.
    • (2008) Nature , vol.453 , pp. 539-543
    • Watanabe, T.1    Totoki, Y.2    Toyoda, A.3    Kaneda, M.4    Kuramochi-Miyagawa, S.5
  • 33
    • 41649102715 scopus 로고    scopus 로고
    • Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    • Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, et al. (2008) Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Res 18: 571-584.
    • (2008) Genome Res , vol.18 , pp. 571-584
    • Morin, R.D.1    Aksay, G.2    Dolgosheina, E.3    Ebhardt, H.A.4    Magrini, V.5
  • 34
    • 39749083331 scopus 로고    scopus 로고
    • The birth and death of microRNA genes in Drosophila
    • Lu J, Shen Y, Wu Q, Kumar S, He B, et al. (2008) The birth and death of microRNA genes in Drosophila. Nat Genet 40: 351-355.
    • (2008) Nat Genet , vol.40 , pp. 351-355
    • Lu, J.1    Shen, Y.2    Wu, Q.3    Kumar, S.4    He, B.5
  • 37
    • 45849126048 scopus 로고    scopus 로고
    • Molecular evolution of a primate-specific microRNA family
    • Zhang R, Wang YQ, Su B, (2008) Molecular evolution of a primate-specific microRNA family. Mol Biol and Evol 25: 1493-1502.
    • (2008) Mol Biol and Evol , vol.25 , pp. 1493-1502
    • Zhang, R.1    Wang, Y.Q.2    Su, B.3
  • 38
    • 43449111804 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): Their expression during early embryonic development
    • Ramachandra RK, Salem M, Gahr S, Rexroad CE, Yao J, (2008) Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): Their expression during early embryonic development. BMC Dev Biol 8: 41.
    • (2008) BMC Dev Biol , vol.8 , pp. 41
    • Ramachandra, R.K.1    Salem, M.2    Gahr, S.3    Rexroad, C.E.4    Yao, J.5
  • 39
    • 77958460848 scopus 로고    scopus 로고
    • Discovering conserved insect microRNAs from expressed sequence tags
    • Jia QD, Lin KJ, Liang JD, Yu L, Li F, (2010) Discovering conserved insect microRNAs from expressed sequence tags. J Insect Physiol 56: 1763-1769.
    • (2010) J Insect Physiol , vol.56 , pp. 1763-1769
    • Jia, Q.D.1    Lin, K.J.2    Liang, J.D.3    Yu, L.4    Li, F.5
  • 40
    • 33845452609 scopus 로고    scopus 로고
    • Insect microRNAs: Structure, function and evolution
    • Behura SK, (2007) Insect microRNAs: Structure, function and evolution. Insect Biochem and Molec 37: 3-9.
    • (2007) Insect Biochem and Molec , vol.37 , pp. 3-9
    • Behura, S.K.1
  • 41
    • 0036670695 scopus 로고    scopus 로고
    • The bantam gene regulates Drosophila growth
    • Hipfner DR, Weigmann K, Cohen SM, (2002) The bantam gene regulates Drosophila growth. Genetics 161: 1527-1537.
    • (2002) Genetics , vol.161 , pp. 1527-1537
    • Hipfner, D.R.1    Weigmann, K.2    Cohen, S.M.3
  • 42
    • 70349093504 scopus 로고    scopus 로고
    • The microRNA bantam Functions in Epithelial Cells to Regulate Scaling Growth of Dendrite Arbors in Drosophila Sensory Neurons
    • Parrish JZ, Xu PZ, Kim CC, Jan LY, Jan YN, (2009) The microRNA bantam Functions in Epithelial Cells to Regulate Scaling Growth of Dendrite Arbors in Drosophila Sensory Neurons. Neuron 63: 788-802.
    • (2009) Neuron , vol.63 , pp. 788-802
    • Parrish, J.Z.1    Xu, P.Z.2    Kim, C.C.3    Jan, L.Y.4    Jan, Y.N.5
  • 43
    • 71149108895 scopus 로고    scopus 로고
    • Conserved MicroRNA miR-8/miR-200 and Its Target USH/FOG2 Control Growth by Regulating PI3K
    • Hyun S, Lee JH, Jin H, Nam J, Namkoong B, et al. (2009) Conserved MicroRNA miR-8/miR-200 and Its Target USH/FOG2 Control Growth by Regulating PI3K. Cell 139: 1096-1108.
    • (2009) Cell , vol.139 , pp. 1096-1108
    • Hyun, S.1    Lee, J.H.2    Jin, H.3    Nam, J.4    Namkoong, B.5
  • 44
    • 34848927455 scopus 로고    scopus 로고
    • The conserved microRNA MiR-8 tunes atrophin levels to prevent neurodegeneration in Drosophila
    • Karres JS, Hilgers V, Carrera I, Treisman J, Cohen SM, (2007) The conserved microRNA MiR-8 tunes atrophin levels to prevent neurodegeneration in Drosophila. Cell 131: 136-145.
    • (2007) Cell , vol.131 , pp. 136-145
    • Karres, J.S.1    Hilgers, V.2    Carrera, I.3    Treisman, J.4    Cohen, S.M.5
  • 45
    • 33751118533 scopus 로고    scopus 로고
    • MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila
    • Li Y, Wang F, Lee JA, Gao FB, (2006) MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila. Gene Dev 20: 2793-2805.
    • (2006) Gene Dev , vol.20 , pp. 2793-2805
    • Li, Y.1    Wang, F.2    Lee, J.A.3    Gao, F.B.4
  • 46
    • 73549112663 scopus 로고    scopus 로고
    • miR-9a prevents apoptosis during wing development by repressing Drosophila LIM-only
    • Bejarano F, Smibert P, Lai EC, (2010) miR-9a prevents apoptosis during wing development by repressing Drosophila LIM-only. Dev Biol 338: 63-73.
    • (2010) Dev Biol , vol.338 , pp. 63-73
    • Bejarano, F.1    Smibert, P.2    Lai, E.C.3
  • 47
    • 30044437240 scopus 로고    scopus 로고
    • MicroRNA1 influences cardiac differentiation in Drosophila and regulates notch signaling
    • Kwon C, Han Z, Olson EN, Srivastava D, (2005) MicroRNA1 influences cardiac differentiation in Drosophila and regulates notch signaling. Proc Natl Acad Sci USA 102: 18986-18991.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 18986-18991
    • Kwon, C.1    Han, Z.2    Olson, E.N.3    Srivastava, D.4
  • 48
    • 25844460031 scopus 로고    scopus 로고
    • Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth
    • Sokol NS, Ambros V, (2005) Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth. Gene Dev 19: 2343-2354.
    • (2005) Gene Dev , vol.19 , pp. 2343-2354
    • Sokol, N.S.1    Ambros, V.2
  • 49
    • 70249083439 scopus 로고    scopus 로고
    • Drosophila Maelstrom Ensures Proper Germline Stem Cell Lineage Differentiation by Repressing microRNA-7
    • Pek JW, Lim AK, Kai T, (2009) Drosophila Maelstrom Ensures Proper Germline Stem Cell Lineage Differentiation by Repressing microRNA-7. Dev Cell 17: 417-424.
    • (2009) Dev Cell , vol.17 , pp. 417-424
    • Pek, J.W.1    Lim, A.K.2    Kai, T.3
  • 50
    • 77954697226 scopus 로고    scopus 로고
    • Drosophila microRNAs 263a/b Confer Robustness during Development by Protecting Nascent Sense Organs from Apoptosis
    • Hilgers V, Bushati N, Cohen SM, (2010) Drosophila microRNAs 263a/b Confer Robustness during Development by Protecting Nascent Sense Organs from Apoptosis. Plos Biol 8 (6): e1000396.
    • (2010) Plos Biol , vol.8 , Issue.6
    • Hilgers, V.1    Bushati, N.2    Cohen, S.M.3
  • 51
    • 67650249494 scopus 로고    scopus 로고
    • miR-184 Has Multiple Roles in Drosophila Female Germline Development
    • Iovino N, Pane A, Gaul U, (2009) miR-184 Has Multiple Roles in Drosophila Female Germline Development. Dev Cell 17: 123-133.
    • (2009) Dev Cell , vol.17 , pp. 123-133
    • Iovino, N.1    Pane, A.2    Gaul, U.3
  • 52
    • 33645512836 scopus 로고    scopus 로고
    • Drosophila lacking microRNA miR-278 are defective in energy homeostasis (vol 20, pg 417, 2006)
    • Teleman AA, Maitra SN, Cohen SM, (2006) Drosophila lacking microRNA miR-278 are defective in energy homeostasis (vol 20, pg 417, 2006). Gene Dev 20: 913-913.
    • (2006) Gene Dev , vol.20 , pp. 913
    • Teleman, A.A.1    Maitra, S.N.2    Cohen, S.M.3
  • 53
    • 36749036712 scopus 로고    scopus 로고
    • Functional screening identifies miR-315 as a potent activator of Wingless signaling
    • Silver SJ, Hagen JW, Okamura K, Perrimon N, Lai EC, (2007) Functional screening identifies miR-315 as a potent activator of Wingless signaling. Proc Natl Acad Sci USA 104: 18151-18156.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 18151-18156
    • Silver, S.J.1    Hagen, J.W.2    Okamura, K.3    Perrimon, N.4    Lai, E.C.5
  • 54
    • 77956021452 scopus 로고    scopus 로고
    • Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis
    • Yelina NE, Smith LM, Jones AME, Patel K, Kelly KA, et al. (2010) Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis. Proc Natl Acad Sci USA 107: 13948-13953.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 13948-13953
    • Yelina, N.E.1    Smith, L.M.2    Jones, A.M.E.3    Patel, K.4    Kelly, K.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.