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Volumn , Issue , 2014, Pages 273-278

Biomarker development for pancreatic ductal adenocarcinoma using integrated analysis of mRNA and miRNA expression

Author keywords

Biomarker development; miRNA expression; mRNA expression; Pancreatic ductal adenocarcinoma (PDAC); prediction model

Indexed keywords


EID: 84922779661     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBM.2014.6999167     Document Type: Conference Paper
Times cited : (4)

References (35)
  • 1
    • 84877819319 scopus 로고    scopus 로고
    • Strategies for discovering novel pancreatic cancer biomarkers
    • Apr 9
    • A. Chan, E. P. Diamandis, and I. M. Blasutig, "Strategies for discovering novel pancreatic cancer biomarkers," J Proteomics, vol. 81, pp. 126-34, Apr 9 2013.
    • (2013) J Proteomics , vol.81 , pp. 126-134
    • Chan, A.1    Diamandis, E.P.2    Blasutig, I.M.3
  • 3
    • 74249123570 scopus 로고    scopus 로고
    • The miR-34 family in cancer and apoptosis
    • Feb
    • H. Hermeking, "The miR-34 family in cancer and apoptosis," Cell Death Differ, vol. 17, pp. 193-9, Feb 2010.
    • (2010) Cell Death Differ , vol.17 , pp. 193-199
    • Hermeking, H.1
  • 5
    • 37549068984 scopus 로고    scopus 로고
    • Targeting microRNA expression to regulate angiogenesis
    • Jan
    • A. Kuehbacher, C. Urbich, and S. Dimmeler, "Targeting microRNA expression to regulate angiogenesis," Trends Pharmacol Sci, vol. 29, pp. 12-5, Jan 2008.
    • (2008) Trends Pharmacol Sci , vol.29 , pp. 12-15
    • Kuehbacher, A.1    Urbich, C.2    Dimmeler, S.3
  • 6
    • 63049085576 scopus 로고    scopus 로고
    • MicroRNAs-the micro steering wheel of tumour metastases
    • Apr
    • M. S. Nicoloso, R. Spizzo, M. Shimizu, S. Rossi, and G. A. Calin, "MicroRNAs-the micro steering wheel of tumour metastases," Nat Rev Cancer, vol. 9, pp. 293-302, Apr 2009.
    • (2009) Nat Rev Cancer , vol.9 , pp. 293-302
    • Nicoloso, M.S.1    Spizzo, R.2    Shimizu, M.3    Rossi, S.4    Calin, G.A.5
  • 7
    • 1942435249 scopus 로고    scopus 로고
    • Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
    • May
    • D. P. Bartel and C. Z. Chen, "Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs," Nat Rev Genet, vol. 5, pp. 396-400, May 2004.
    • (2004) Nat Rev Genet , vol.5 , pp. 396-400
    • Bartel, D.P.1    Chen, C.Z.2
  • 8
    • 84901807877 scopus 로고    scopus 로고
    • Aberrant micrornas in pancreatic cancer: Researches and clinical implications
    • T. Sun, X. Kong, Y. Du, and Z. Li, "Aberrant MicroRNAs in Pancreatic Cancer: Researches and Clinical Implications," Gastroenterol Res Pract, vol. 2014, p. 386561, 2014.
    • (2014) Gastroenterol Res Pract , vol.2014 , pp. 386561
    • Sun, T.1    Kong, X.2    Du, Y.3    Li, Z.4
  • 9
    • 84884822351 scopus 로고    scopus 로고
    • Identifying cancer specific functionally relevant miRNAs from gene expression and miRNA-to-gene networks using regularized regression
    • A. M. Mezlini, B. Wang, A. Deshwar, Q. Morris, and A. Goldenberg, "Identifying cancer specific functionally relevant miRNAs from gene expression and miRNA-to-gene networks using regularized regression," PLoS One, vol. 8, p. e73168, 2013.
    • (2013) PLoS One , vol.8 , pp. e73168
    • Mezlini, A.M.1    Wang, B.2    Deshwar, A.3    Morris, Q.4    Goldenberg, A.5
  • 10
    • 84863278019 scopus 로고    scopus 로고
    • Integrative survival-based molecular profiling of human pancreatic cancer
    • Mar 1
    • T. R. Donahue, L. M. Tran, R. Hill, Y. Li, A. Kovochich, J. H. Calvopina, et al., "Integrative survival-based molecular profiling of human pancreatic cancer," Clin Cancer Res, vol. 18, pp. 1352-63, Mar 1 2012.
    • (2012) Clin Cancer Res , vol.18 , pp. 1352-1363
    • Donahue, T.R.1    Tran, L.M.2    Hill, R.3    Li, Y.4    Kovochich, A.5    Calvopina, J.H.6
  • 11
    • 60849121964 scopus 로고    scopus 로고
    • Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia
    • Nov-Dec
    • L. Badea, V. Herlea, S. O. Dima, T. Dumitrascu, and I. Popescu, "Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia," Hepatogastroenterology, vol. 55, pp. 2016-27, Nov-Dec 2008.
    • (2008) Hepatogastroenterology , vol.55 , pp. 2016-2027
    • Badea, L.1    Herlea, V.2    Dima, S.O.3    Dumitrascu, T.4    Popescu, I.5
  • 12
    • 69249228672 scopus 로고    scopus 로고
    • FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt
    • Sep 8
    • H. Pei, L. Li, B. L. Fridley, G. D. Jenkins, K. R. Kalari, W. Lingle, et al., "FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt," Cancer Cell, vol. 16, pp. 259-66, Sep 8 2009.
    • (2009) Cancer Cell , vol.16 , pp. 259-266
    • Pei, H.1    Li, L.2    Fridley, B.L.3    Jenkins, G.D.4    Kalari, K.R.5    Lingle, W.6
  • 13
    • 70450263382 scopus 로고    scopus 로고
    • Gene expression profiling of isolated tumour cells from anaplastic large cell lymphomas: Insights into its cellular origin, pathogenesis and relation to Hodgkin lymphoma
    • Nov
    • S. Eckerle, V. Brune, C. Doring, E. Tiacci, V. Bohle, C. Sundstrom, et al., "Gene expression profiling of isolated tumour cells from anaplastic large cell lymphomas: insights into its cellular origin, pathogenesis and relation to Hodgkin lymphoma," Leukemia, vol. 23, pp. 2129-38, Nov 2009.
    • (2009) Leukemia , vol.23 , pp. 2129-2138
    • Eckerle, S.1    Brune, V.2    Doring, C.3    Tiacci, E.4    Bohle, V.5    Sundstrom, C.6
  • 14
    • 74849113364 scopus 로고    scopus 로고
    • Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue
    • Jan
    • D. T. Chen, A. Nasir, A. Culhane, C. Venkataramu, W. Fulp, R. Rubio, et al., "Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue," Breast Cancer Res Treat, vol. 119, pp. 335-46, Jan 2010.
    • (2010) Breast Cancer Res Treat , vol.119 , pp. 335-346
    • Chen, D.T.1    Nasir, A.2    Culhane, A.3    Venkataramu, C.4    Fulp, W.5    Rubio, R.6
  • 15
    • 34247549347 scopus 로고    scopus 로고
    • Genome-wide molecular profiles of HCV-induced dysplasia and hepatocellular carcinoma
    • Apr
    • E. Wurmbach, Y. B. Chen, G. Khitrov, W. Zhang, S. Roayaie, M. Schwartz, et al., "Genome-wide molecular profiles of HCV-induced dysplasia and hepatocellular carcinoma," Hepatology, vol. 45, pp. 938-47, Apr 2007.
    • (2007) Hepatology , vol.45 , pp. 938-947
    • Wurmbach, E.1    Chen, Y.B.2    Khitrov, G.3    Zhang, W.4    Roayaie, S.5    Schwartz, M.6
  • 16
    • 77956418156 scopus 로고    scopus 로고
    • Gene expression-based classification of non-small cell lung carcinomas and survival prediction
    • J. Hou, J. Aerts, B. den Hamer, W. van Ijcken, M. den Bakker, P. Riegman, et al., "Gene expression-based classification of non-small cell lung carcinomas and survival prediction," PLoS One, vol. 5, p. e10312, 2010.
    • (2010) PLoS One , vol.5 , pp. e10312
    • Hou, J.1    Aerts, J.2    Den Hamer, B.3    Van Ijcken, W.4    Den Bakker, M.5    Riegman, P.6
  • 18
    • 84891796290 scopus 로고    scopus 로고
    • MiRTarBase update 2014: An information resource for experimentally validated miRNA-target interactions
    • Jan
    • S. D. Hsu, Y. T. Tseng, S. Shrestha, Y. L. Lin, A. Khaleel, C. H. Chou, et al., "miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions," Nucleic Acids Res, vol. 42, pp. D78-85, Jan 2014.
    • (2014) Nucleic Acids Res , vol.42 , pp. D78-85
    • Hsu, S.D.1    Tseng, Y.T.2    Shrestha, S.3    Lin, Y.L.4    Khaleel, A.5    Chou, C.H.6
  • 19
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Jan 14
    • B. P. Lewis, C. B. Burge, and D. P. Bartel, "Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets," Cell, vol. 120, pp. 15-20, Jan 14 2005.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 20
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • Oct
    • M. Kertesz, N. Iovino, U. Unnerstall, U. Gaul, and E. Segal, "The role of site accessibility in microRNA target recognition," Nat Genet, vol. 39, pp. 1278-84, Oct 2007.
    • (2007) Nat Genet , vol.39 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 21
    • 79960022362 scopus 로고    scopus 로고
    • MiRvestigator: Web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling
    • Jul
    • C. L. Plaisier, J. C. Bare, and N. S. Baliga, "miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling," Nucleic Acids Res, vol. 39, pp. W125-31, Jul 2011.
    • (2011) Nucleic Acids Res , vol.39 , pp. W125-W131
    • Plaisier, C.L.1    Bare, J.C.2    Baliga, N.S.3
  • 22
    • 84868326494 scopus 로고    scopus 로고
    • A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
    • Nov
    • C. L. Plaisier, M. Pan, and N. S. Baliga, "A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers," Genome Res, vol. 22, pp. 2302-14, Nov 2012.
    • (2012) Genome Res , vol.22 , pp. 2302-2314
    • Plaisier, C.L.1    Pan, M.2    Baliga, N.S.3
  • 23
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Nov
    • P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang, D. Ramage, et al., "Cytoscape: a software environment for integrated models of biomolecular interaction networks," Genome Res, vol. 13, pp. 2498-504, Nov 2003.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6
  • 24
    • 84892511644 scopus 로고    scopus 로고
    • Largescale gene function analysis with the PANTHER classification system
    • Aug
    • H. Mi, A. Muruganujan, J. T. Casagrande, and P. D. Thomas, "Largescale gene function analysis with the PANTHER classification system," Nat Protoc, vol. 8, pp. 1551-66, Aug 2013.
    • (2013) Nat Protoc , vol.8 , pp. 1551-1566
    • Mi, H.1    Muruganujan, A.2    Casagrande, J.T.3    Thomas, P.D.4
  • 25
    • 66749145196 scopus 로고    scopus 로고
    • Role of TMPRSS4 during cancer progression
    • Oct
    • S. Y. Choi, H. C. Shin, S. Y. Kim, and Y. W. Park, "Role of TMPRSS4 during cancer progression," Drug News Perspect, vol. 21, pp. 417-23, Oct 2008.
    • (2008) Drug News Perspect , vol.21 , pp. 417-423
    • Choi, S.Y.1    Shin, H.C.2    Kim, S.Y.3    Park, Y.W.4
  • 26
    • 84868317385 scopus 로고    scopus 로고
    • Rapid characterization of candidate biomarkers for pancreatic cancer using cell microarrays (CMAs)
    • Nov 2
    • M. S. Kim, S. V. Kuppireddy, S. Sakamuri, M. Singal, D. Getnet, H. C. Harsha, et al., "Rapid characterization of candidate biomarkers for pancreatic cancer using cell microarrays (CMAs)," J Proteome Res, vol. 11, pp. 5556-63, Nov 2 2012.
    • (2012) J Proteome Res , vol.11 , pp. 5556-5563
    • Kim, M.S.1    Kuppireddy, S.V.2    Sakamuri, S.3    Singal, M.4    Getnet, D.5    Harsha, H.C.6
  • 28
    • 84866171256 scopus 로고    scopus 로고
    • Global gene expression and functional network analysis of gastric cancer identify extended pathway maps and GPRC5A as a potential biomarker
    • Dec 29
    • L. Cheng, S. Yang, Y. Yang, W. Zhang, H. Xiao, H. Gao, et al., "Global gene expression and functional network analysis of gastric cancer identify extended pathway maps and GPRC5A as a potential biomarker," Cancer Lett, vol. 326, pp. 105-13, Dec 29 2012.
    • (2012) Cancer Lett , vol.326 , pp. 105-113
    • Cheng, L.1    Yang, S.2    Yang, Y.3    Zhang, W.4    Xiao, H.5    Gao, H.6
  • 30
    • 19644363959 scopus 로고    scopus 로고
    • LMO3 interacts with neuronal transcription factor, HEN2, and acts as an oncogene in neuroblastoma
    • Jun 1
    • M. Aoyama, T. Ozaki, H. Inuzuka, D. Tomotsune, J. Hirato, Y. Okamoto, et al., "LMO3 interacts with neuronal transcription factor, HEN2, and acts as an oncogene in neuroblastoma," Cancer Res, vol. 65, pp. 4587-97, Jun 1 2005.
    • (2005) Cancer Res , vol.65 , pp. 4587-4597
    • Aoyama, M.1    Ozaki, T.2    Inuzuka, H.3    Tomotsune, D.4    Hirato, J.5    Okamoto, Y.6
  • 31
    • 84893665135 scopus 로고    scopus 로고
    • Discovery of novel candidate oncogenes in pancreatic carcinoma using high-throughput microarrays
    • Nov-Dec
    • Y. Jiang, M. Liu, Z. Li, and Y. Jiang, "Discovery of novel candidate oncogenes in pancreatic carcinoma using high-throughput microarrays," Hepatogastroenterology, vol. 60, pp. 1825-32, Nov-Dec 2013.
    • (2013) Hepatogastroenterology , vol.60 , pp. 1825-1832
    • Jiang, Y.1    Liu, M.2    Li, Z.3    Jiang, Y.4
  • 32
    • 84885102924 scopus 로고    scopus 로고
    • Laminin, gamma 2 (LAMC2): A promising new putative pancreatic cancer biomarker identified by proteomic analysis of pancreatic adenocarcinoma tissues
    • Oct
    • H. Kosanam, I. Prassas, C. C. Chrystoja, I. Soleas, A. Chan, A. Dimitromanolakis, et al., "Laminin, gamma 2 (LAMC2): a promising new putative pancreatic cancer biomarker identified by proteomic analysis of pancreatic adenocarcinoma tissues," Mol Cell Proteomics, vol. 12, pp. 2820-32, Oct 2013.
    • (2013) Mol Cell Proteomics , vol.12 , pp. 2820-2832
    • Kosanam, H.1    Prassas, I.2    Chrystoja, C.C.3    Soleas, I.4    Chan, A.5    Dimitromanolakis, A.6
  • 33
    • 77957361864 scopus 로고    scopus 로고
    • Targeting microRNAs in cancer: Rationale, strategies and challenges
    • Oct
    • R. Garzon, G. Marcucci, and C. M. Croce, "Targeting microRNAs in cancer: rationale, strategies and challenges," Nat Rev Drug Discov, vol. 9, pp. 775-89, Oct 2010.
    • (2010) Nat Rev Drug Discov , vol.9 , pp. 775-789
    • Garzon, R.1    Marcucci, G.2    Croce, C.M.3
  • 35
    • 35148817771 scopus 로고    scopus 로고
    • Biomarker validation: Movement towards personalized medicine
    • Sep
    • X. Zhang, "Biomarker validation: movement towards personalized medicine," Expert Rev Mol Diagn, vol. 7, pp. 469-71, Sep 2007.
    • (2007) Expert Rev Mol Diagn , vol.7 , pp. 469-471
    • Zhang, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.