-
1
-
-
84887200580
-
Quantitation of endogenous peptides using mass spectrometry based methods
-
Romanova E.V., Dowd S.E., Sweedler J.V. Quantitation of endogenous peptides using mass spectrometry based methods. Curr Opin Chem Biol 2013, 17:801-808.
-
(2013)
Curr Opin Chem Biol
, vol.17
, pp. 801-808
-
-
Romanova, E.V.1
Dowd, S.E.2
Sweedler, J.V.3
-
2
-
-
77952538049
-
Quantitation in mass-spectrometry-based proteomics
-
Schulze W.X., Usadel B. Quantitation in mass-spectrometry-based proteomics. Annu Rev Plant Biol 2010, 61:491-516.
-
(2010)
Annu Rev Plant Biol
, vol.61
, pp. 491-516
-
-
Schulze, W.X.1
Usadel, B.2
-
3
-
-
84920382645
-
SLP-76 N-terminal tyrosine residues regulate a dynamic signaling equilibrium involving feedback of proximal TCR signaling
-
Ji Q., Ding Y., Salomon A.R. SLP-76 N-terminal tyrosine residues regulate a dynamic signaling equilibrium involving feedback of proximal TCR signaling. Mol Cell Proteomics 2015, 14:30-40.
-
(2015)
Mol Cell Proteomics
, vol.14
, pp. 30-40
-
-
Ji, Q.1
Ding, Y.2
Salomon, A.R.3
-
4
-
-
84860015324
-
A proteomic view at T cell costimulation
-
Lichtenfels R., Rappl G., Hombach A.A., Recktenwald C.V., Dressler S.P., Abken H., Seliger B. A proteomic view at T cell costimulation. PLOS ONE 2012, 7:e32994.
-
(2012)
PLOS ONE
, vol.7
-
-
Lichtenfels, R.1
Rappl, G.2
Hombach, A.A.3
Recktenwald, C.V.4
Dressler, S.P.5
Abken, H.6
Seliger, B.7
-
5
-
-
84881525417
-
Differential expression of proteins in naive and IL-2 stimulated primary human NK cells identified by global proteomic analysis
-
Ma D., Cao W., Kapur A., Felder M., Scarlett C.O., Patankar M.S., Li L. Differential expression of proteins in naive and IL-2 stimulated primary human NK cells identified by global proteomic analysis. J Proteomics 2013, 91:151-163.
-
(2013)
J Proteomics
, vol.91
, pp. 151-163
-
-
Ma, D.1
Cao, W.2
Kapur, A.3
Felder, M.4
Scarlett, C.O.5
Patankar, M.S.6
Li, L.7
-
6
-
-
84878413485
-
Proteomic analysis of NK92-MI cells activated by neuropeptide substance P
-
Diandong H., Kefeng S., Weixin F., Zaifu L. Proteomic analysis of NK92-MI cells activated by neuropeptide substance P. Neuropeptides 2013, 47:157-162.
-
(2013)
Neuropeptides
, vol.47
, pp. 157-162
-
-
Diandong, H.1
Kefeng, S.2
Weixin, F.3
Zaifu, L.4
-
7
-
-
67649429400
-
Functional regulation and proteomic characterization of human natural killer cells through recombinant human granulocyte-colony stimulating factor treatment
-
Chen Y.J., Yu C.C., Chen S.T., Chen T.Y., Liao H.F. Functional regulation and proteomic characterization of human natural killer cells through recombinant human granulocyte-colony stimulating factor treatment. Proteomics Clin Appl 2009, 3:563-573.
-
(2009)
Proteomics Clin Appl
, vol.3
, pp. 563-573
-
-
Chen, Y.J.1
Yu, C.C.2
Chen, S.T.3
Chen, T.Y.4
Liao, H.F.5
-
8
-
-
84862660781
-
Quantitative proteomics reveals that miR-155 regulates the PI3K-AKT pathway in diffuse large B-cell lymphoma
-
Huang X., Shen Y., Liu M., Bi C., Jiang C., Iqbal J., McKeithan T.W., Chan W.C., Ding S.J., Fu K. Quantitative proteomics reveals that miR-155 regulates the PI3K-AKT pathway in diffuse large B-cell lymphoma. Am J Pathol 2012, 181:26-33.
-
(2012)
Am J Pathol
, vol.181
, pp. 26-33
-
-
Huang, X.1
Shen, Y.2
Liu, M.3
Bi, C.4
Jiang, C.5
Iqbal, J.6
McKeithan, T.W.7
Chan, W.C.8
Ding, S.J.9
Fu, K.10
-
10
-
-
84877613093
-
Proteome analysis of distinct developmental stages of human natural killer (NK) cells
-
Scheiter M., Lau U., van Ham M., Bulitta B., Grobe L., Garritsen H., Klawonn F., Konig S., Jansch L. Proteome analysis of distinct developmental stages of human natural killer (NK) cells. Mol Cell Proteomics 2013, 12:1099-1114.
-
(2013)
Mol Cell Proteomics
, vol.12
, pp. 1099-1114
-
-
Scheiter, M.1
Lau, U.2
van Ham, M.3
Bulitta, B.4
Grobe, L.5
Garritsen, H.6
Klawonn, F.7
Konig, S.8
Jansch, L.9
-
11
-
-
84883643051
-
Proteomic analysis of B-cell receptor signaling in chronic lymphocytic leukaemia reveals a possible role for kininogen
-
Kashuba E., Eagle G.L., Bailey J., Evans P., Welham K.J., Allsup D., Cawkwell L. Proteomic analysis of B-cell receptor signaling in chronic lymphocytic leukaemia reveals a possible role for kininogen. J Proteomics 2013, 91:478-485.
-
(2013)
J Proteomics
, vol.91
, pp. 478-485
-
-
Kashuba, E.1
Eagle, G.L.2
Bailey, J.3
Evans, P.4
Welham, K.J.5
Allsup, D.6
Cawkwell, L.7
-
12
-
-
71949127588
-
A comparison between protein profiles of B cell subpopulations and mantle cell lymphoma cells
-
Stranneheim H., Orre L.M., Lehtio J., Flygare J. A comparison between protein profiles of B cell subpopulations and mantle cell lymphoma cells. Proteome Sci 2009, 7:43.
-
(2009)
Proteome Sci
, vol.7
, pp. 43
-
-
Stranneheim, H.1
Orre, L.M.2
Lehtio, J.3
Flygare, J.4
-
13
-
-
84861157792
-
Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles
-
Deeb S.J., D'Souza R.C., Cox J., Schmidt-Supprian M., Mann M. Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles. Mol Cell Proteomics 2012, 11:77-89.
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 77-89
-
-
Deeb, S.J.1
D'Souza, R.C.2
Cox, J.3
Schmidt-Supprian, M.4
Mann, M.5
-
14
-
-
71049123949
-
Protein profiling of plasma membranes defines aberrant signaling pathways in mantle cell lymphoma
-
Boyd R.S., Jukes-Jones R., Walewska R., Brown D., Dyer M.J., Cain K. Protein profiling of plasma membranes defines aberrant signaling pathways in mantle cell lymphoma. Mol Cell Proteomics 2009, 8:1501-1515.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 1501-1515
-
-
Boyd, R.S.1
Jukes-Jones, R.2
Walewska, R.3
Brown, D.4
Dyer, M.J.5
Cain, K.6
-
15
-
-
79953010049
-
Proteomic characterization of plasma membrane-proximal T cell activation responses
-
de Wet B., Zech T., Salek M., Acuto O., Harder T. Proteomic characterization of plasma membrane-proximal T cell activation responses. J Biol Chem 2011, 286:4072-4080.
-
(2011)
J Biol Chem
, vol.286
, pp. 4072-4080
-
-
de Wet, B.1
Zech, T.2
Salek, M.3
Acuto, O.4
Harder, T.5
-
16
-
-
75149146556
-
Defining the membrane proteome of NK cells
-
Ghosh D., Lippert D., Krokhin O., Cortens J.P., Wilkins J.A. Defining the membrane proteome of NK cells. J Mass Spectrom 2010, 45:1-25.
-
(2010)
J Mass Spectrom
, vol.45
, pp. 1-25
-
-
Ghosh, D.1
Lippert, D.2
Krokhin, O.3
Cortens, J.P.4
Wilkins, J.A.5
-
17
-
-
78651590924
-
Effector granules in human T lymphocytes: the luminal proteome of secretory lysosomes from human T cells
-
Schmidt H., Gelhaus C., Nebendahl M., Lettau M., Lucius R., Leippe M., Kabelitz D., Janssen O. Effector granules in human T lymphocytes: the luminal proteome of secretory lysosomes from human T cells. Cell Commun Signal 2011, 9:4.
-
(2011)
Cell Commun Signal
, vol.9
, pp. 4
-
-
Schmidt, H.1
Gelhaus, C.2
Nebendahl, M.3
Lettau, M.4
Lucius, R.5
Leippe, M.6
Kabelitz, D.7
Janssen, O.8
-
18
-
-
79953693933
-
Effector granules in human T lymphocytes: proteomic evidence for two distinct species of cytotoxic effector vesicles
-
Schmidt H., Gelhaus C., Nebendahl M., Lettau M., Lucius R., Leippe M., Kabelitz D., Janssen O. Effector granules in human T lymphocytes: proteomic evidence for two distinct species of cytotoxic effector vesicles. J Proteome Res 2011, 10:1603-1620.
-
(2011)
J Proteome Res
, vol.10
, pp. 1603-1620
-
-
Schmidt, H.1
Gelhaus, C.2
Nebendahl, M.3
Lettau, M.4
Lucius, R.5
Leippe, M.6
Kabelitz, D.7
Janssen, O.8
-
19
-
-
48949087726
-
2-D DIGE analyses of enriched secretory lysosomes reveal heterogeneous profiles of functionally relevant proteins in leukemic and activated human NK cells
-
Schmidt H., Gelhaus C., Nebendahl M., Lettau M., Watzl C., Kabelitz D., Leippe M., Janssen O. 2-D DIGE analyses of enriched secretory lysosomes reveal heterogeneous profiles of functionally relevant proteins in leukemic and activated human NK cells. Proteomics 2008, 8:2911-2925.
-
(2008)
Proteomics
, vol.8
, pp. 2911-2925
-
-
Schmidt, H.1
Gelhaus, C.2
Nebendahl, M.3
Lettau, M.4
Watzl, C.5
Kabelitz, D.6
Leippe, M.7
Janssen, O.8
-
20
-
-
84876541392
-
Direct proteomic quantification of the secretome of activated immune cells
-
Meissner F., Scheltema R.A., Mollenkopf H.J., Mann M. Direct proteomic quantification of the secretome of activated immune cells. Science 2013, 340:475-478.
-
(2013)
Science
, vol.340
, pp. 475-478
-
-
Meissner, F.1
Scheltema, R.A.2
Mollenkopf, H.J.3
Mann, M.4
-
21
-
-
84901253129
-
Proteomic identification of monoclonal antibodies from serum
-
Boutz D.R., Horton A.P., Wine Y., Lavinder J.J., Georgiou G., Marcotte E.M. Proteomic identification of monoclonal antibodies from serum. Anal Chem 2014, 86:4758-4766.
-
(2014)
Anal Chem
, vol.86
, pp. 4758-4766
-
-
Boutz, D.R.1
Horton, A.P.2
Wine, Y.3
Lavinder, J.J.4
Georgiou, G.5
Marcotte, E.M.6
-
22
-
-
80054029767
-
The Human Immunopeptidome Project, a suggestion for yet another postgenome next big thing
-
Admon A., Bassani-Sternberg M. The Human Immunopeptidome Project, a suggestion for yet another postgenome next big thing. Mol Cell Proteomics 2011, 10. O111 011833.
-
(2011)
Mol Cell Proteomics
-
-
Admon, A.1
Bassani-Sternberg, M.2
-
23
-
-
79958769266
-
Insights into MHC class I antigen processing gained from large-scale analysis of class I ligands
-
Mester G., Hoffmann V., Stevanovic S. Insights into MHC class I antigen processing gained from large-scale analysis of class I ligands. Cell Mol Life Sci 2011, 68:1521-1532.
-
(2011)
Cell Mol Life Sci
, vol.68
, pp. 1521-1532
-
-
Mester, G.1
Hoffmann, V.2
Stevanovic, S.3
-
24
-
-
80053392157
-
The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation
-
Caron E., Vincent K., Fortier M.H., Laverdure J.P., Bramoulle A., Hardy M.P., Voisin G., Roux P.P., Lemieux S., Thibault P., et al. The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation. Mol Syst Biol 2011, 7:533.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 533
-
-
Caron, E.1
Vincent, K.2
Fortier, M.H.3
Laverdure, J.P.4
Bramoulle, A.5
Hardy, M.P.6
Voisin, G.7
Roux, P.P.8
Lemieux, S.9
Thibault, P.10
-
25
-
-
84885357778
-
Peptides presented by HLA class I molecules in the human thymus
-
Espinosa G., Collado J.A., Scholz E., Mestre-Ferrer A., Kuse N., Takiguchi M., Carrascal M., Canals F., Pujol-Borrell R., Jaraquemada D., et al. Peptides presented by HLA class I molecules in the human thymus. J Proteomics 2013, 94:23-36.
-
(2013)
J Proteomics
, vol.94
, pp. 23-36
-
-
Espinosa, G.1
Collado, J.A.2
Scholz, E.3
Mestre-Ferrer, A.4
Kuse, N.5
Takiguchi, M.6
Carrascal, M.7
Canals, F.8
Pujol-Borrell, R.9
Jaraquemada, D.10
-
26
-
-
84898493547
-
Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides
-
Granados D.P., Sriranganadane D., Daouda T., Zieger A., Laumont C.M., Caron-Lizotte O., Boucher G., Hardy M.P., Gendron P., Cote C., et al. Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides. Nat Commun 2014, 5:3600.
-
(2014)
Nat Commun
, vol.5
, pp. 3600
-
-
Granados, D.P.1
Sriranganadane, D.2
Daouda, T.3
Zieger, A.4
Laumont, C.M.5
Caron-Lizotte, O.6
Boucher, G.7
Hardy, M.P.8
Gendron, P.9
Cote, C.10
-
27
-
-
84891938083
-
Alloreactive cytotoxic T cells provide means to decipher the immunopeptidome and reveal a plethora of tumor-associated self-epitopes
-
Kumari S., Walchli S., Fallang L.E., Yang W., Lund-Johansen F., Schumacher T.N., Olweus J. Alloreactive cytotoxic T cells provide means to decipher the immunopeptidome and reveal a plethora of tumor-associated self-epitopes. Proc Natl Acad Sci U S A 2014, 111:403-408.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 403-408
-
-
Kumari, S.1
Walchli, S.2
Fallang, L.E.3
Yang, W.4
Lund-Johansen, F.5
Schumacher, T.N.6
Olweus, J.7
-
28
-
-
84906258572
-
Integrative biology of T cell activation
-
Malissen B., Gregoire C., Malissen M., Roncagalli R. Integrative biology of T cell activation. Nat Immunol 2014, 15:790-797.
-
(2014)
Nat Immunol
, vol.15
, pp. 790-797
-
-
Malissen, B.1
Gregoire, C.2
Malissen, M.3
Roncagalli, R.4
-
29
-
-
84921469305
-
A new in vivo cross-linking mass spectrometry platform to define protein-protein interactions in living cells
-
Kaake R.M., Wang X., Burke A., Yu C., Kandur W., Yang Y., Novtisky E.J., Second T., Duan J., Kao A., et al. A new in vivo cross-linking mass spectrometry platform to define protein-protein interactions in living cells. Mol Cell Proteomics 2014, 13:3533-3543.
-
(2014)
Mol Cell Proteomics
, vol.13
, pp. 3533-3543
-
-
Kaake, R.M.1
Wang, X.2
Burke, A.3
Yu, C.4
Kandur, W.5
Yang, Y.6
Novtisky, E.J.7
Second, T.8
Duan, J.9
Kao, A.10
-
30
-
-
84907424304
-
A mass spectrometry view of stable and transient protein interactions
-
Budayeva H.G., Cristea I.M. A mass spectrometry view of stable and transient protein interactions. Adv Exp Med Biol 2014, 806:263-282.
-
(2014)
Adv Exp Med Biol
, vol.806
, pp. 263-282
-
-
Budayeva, H.G.1
Cristea, I.M.2
-
31
-
-
84878620367
-
Mass spectrometry supported determination of protein complex structure
-
Walzthoeni T., Leitner A., Stengel F., Aebersold R. Mass spectrometry supported determination of protein complex structure. Curr Opin Struct Biol 2013, 23:252-260.
-
(2013)
Curr Opin Struct Biol
, vol.23
, pp. 252-260
-
-
Walzthoeni, T.1
Leitner, A.2
Stengel, F.3
Aebersold, R.4
-
32
-
-
84871669469
-
Quantitative proteomics: a strategic ally to map protein interaction networks
-
Marcilla M., Albar J.P. Quantitative proteomics: a strategic ally to map protein interaction networks. IUBMB Life 2013, 65:9-16.
-
(2013)
IUBMB Life
, vol.65
, pp. 9-16
-
-
Marcilla, M.1
Albar, J.P.2
-
33
-
-
84871865189
-
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments
-
Armean I.M., Lilley K.S., Trotter M.W. Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. Mol Cell Proteomics 2013, 12:1-13.
-
(2013)
Mol Cell Proteomics
, vol.12
, pp. 1-13
-
-
Armean, I.M.1
Lilley, K.S.2
Trotter, M.W.3
-
34
-
-
84862705739
-
Computational detection of protein complexes in AP-MS experiments
-
Choi H. Computational detection of protein complexes in AP-MS experiments. Proteomics 2012, 12:1663-1668.
-
(2012)
Proteomics
, vol.12
, pp. 1663-1668
-
-
Choi, H.1
-
35
-
-
84864619937
-
Beyond hairballs: the use of quantitative mass spectrometry data to understand protein-protein interactions
-
Gingras A.C., Raught B. Beyond hairballs: the use of quantitative mass spectrometry data to understand protein-protein interactions. FEBS Lett 2012, 586:2723-2731.
-
(2012)
FEBS Lett
, vol.586
, pp. 2723-2731
-
-
Gingras, A.C.1
Raught, B.2
-
36
-
-
84862684340
-
Affinity-purification coupled to mass spectrometry: basic principles and strategies
-
Dunham W.H., Mullin M., Gingras A.C. Affinity-purification coupled to mass spectrometry: basic principles and strategies. Proteomics 2012, 12:1576-1590.
-
(2012)
Proteomics
, vol.12
, pp. 1576-1590
-
-
Dunham, W.H.1
Mullin, M.2
Gingras, A.C.3
-
37
-
-
84863339052
-
Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry
-
Orr S.J., Boutz D.R., Wang R., Chronis C., Lea N.C., Thayaparan T., Hamilton E., Milewicz H., Blanc E., Mufti G.J., et al. Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry. Mol Syst Biol 2012, 8:573.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 573
-
-
Orr, S.J.1
Boutz, D.R.2
Wang, R.3
Chronis, C.4
Lea, N.C.5
Thayaparan, T.6
Hamilton, E.7
Milewicz, H.8
Blanc, E.9
Mufti, G.J.10
-
38
-
-
84894286325
-
Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy
-
Fierro-Monti I., Echeverria P., Racle J., Hernandez C., Picard D., Quadroni M. Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy. PLOS ONE 2013, 8:e80425.
-
(2013)
PLOS ONE
, vol.8
-
-
Fierro-Monti, I.1
Echeverria, P.2
Racle, J.3
Hernandez, C.4
Picard, D.5
Quadroni, M.6
-
39
-
-
84897046940
-
Quantitative proteomics analysis of signalosome dynamics in primary T cells identifies the surface receptor CD6 as a Lat adaptor-independent TCR signaling hub
-
Roncagalli R., Hauri S., Fiore F., Liang Y., Chen Z., Sansoni A., Kanduri K., Joly R., Malzac A., Lahdesmaki H., et al. Quantitative proteomics analysis of signalosome dynamics in primary T cells identifies the surface receptor CD6 as a Lat adaptor-independent TCR signaling hub. Nat Immunol 2014, 15:384-392.
-
(2014)
Nat Immunol
, vol.15
, pp. 384-392
-
-
Roncagalli, R.1
Hauri, S.2
Fiore, F.3
Liang, Y.4
Chen, Z.5
Sansoni, A.6
Kanduri, K.7
Joly, R.8
Malzac, A.9
Lahdesmaki, H.10
-
40
-
-
84901421222
-
New insights into the DT40 B cell receptor cluster using a proteomic proximity labeling assay
-
Li X.W., Rees J.S., Xue P., Zhang H., Hamaia S.W., Sanderson B., Funk P.E., Farndale R.W., Lilley K.S., Perrett S., et al. New insights into the DT40 B cell receptor cluster using a proteomic proximity labeling assay. J Biol Chem 2014, 289:14434-14447.
-
(2014)
J Biol Chem
, vol.289
, pp. 14434-14447
-
-
Li, X.W.1
Rees, J.S.2
Xue, P.3
Zhang, H.4
Hamaia, S.W.5
Sanderson, B.6
Funk, P.E.7
Farndale, R.W.8
Lilley, K.S.9
Perrett, S.10
-
41
-
-
84880433886
-
ERK positive feedback regulates a widespread network of tyrosine phosphorylation sites across canonical T cell signaling and actin cytoskeletal proteins in Jurkat T cells
-
Helou Y.A., Nguyen V., Beik S.P., Salomon A.R. ERK positive feedback regulates a widespread network of tyrosine phosphorylation sites across canonical T cell signaling and actin cytoskeletal proteins in Jurkat T cells. PLOS ONE 2013, 8:e69641.
-
(2013)
PLOS ONE
, vol.8
-
-
Helou, Y.A.1
Nguyen, V.2
Beik, S.P.3
Salomon, A.R.4
-
42
-
-
84867429590
-
Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells
-
Cao L., Ding Y., Hung N., Yu K., Ritz A., Raphael B.J., Salomon A.R. Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells. PLOS ONE 2012, 7:e46725.
-
(2012)
PLOS ONE
, vol.7
-
-
Cao, L.1
Ding, Y.2
Hung, N.3
Yu, K.4
Ritz, A.5
Raphael, B.J.6
Salomon, A.R.7
-
43
-
-
72149093283
-
A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation
-
Nguyen V., Cao L., Lin J.T., Hung N., Ritz A., Yu K., Jianu R., Ulin S.P., Raphael B.J., Laidlaw D.H., et al. A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation. Mol Cell Proteomics 2009, 8:2418-2431.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 2418-2431
-
-
Nguyen, V.1
Cao, L.2
Lin, J.T.3
Hung, N.4
Ritz, A.5
Yu, K.6
Jianu, R.7
Ulin, S.P.8
Raphael, B.J.9
Laidlaw, D.H.10
-
44
-
-
84905206969
-
Quantitative phosphoproteome analysis unveils LAT as a modulator of CD3zeta and ZAP-70 tyrosine phosphorylation
-
Salek M., McGowan S., Trudgian D.C., Dushek O., de Wet B., Efstathiou G., Acuto O. Quantitative phosphoproteome analysis unveils LAT as a modulator of CD3zeta and ZAP-70 tyrosine phosphorylation. PLOS ONE 2013, 8:e77423.
-
(2013)
PLOS ONE
, vol.8
-
-
Salek, M.1
McGowan, S.2
Trudgian, D.C.3
Dushek, O.4
de Wet, B.5
Efstathiou, G.6
Acuto, O.7
-
45
-
-
79953202189
-
T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component
-
Brockmeyer C., Paster W., Pepper D., Tan C.P., Trudgian D.C., McGowan S., Fu G., Gascoigne N.R.J., Acuto O., Salek M. T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component. J Biol Chem 2011, 286:7535-7547.
-
(2011)
J Biol Chem
, vol.286
, pp. 7535-7547
-
-
Brockmeyer, C.1
Paster, W.2
Pepper, D.3
Tan, C.P.4
Trudgian, D.C.5
McGowan, S.6
Fu, G.7
Gascoigne, N.R.J.8
Acuto, O.9
Salek, M.10
-
46
-
-
84922659608
-
Phosphorylation site dynamics of early T-cell receptor signaling
-
Chylek L.A., Akimov V., Dengjel J., Rigbolt K.T., Hu B., Hlavacek W.S., Blagoev B. Phosphorylation site dynamics of early T-cell receptor signaling. PLOS ONE 2014, 9:e104240.
-
(2014)
PLOS ONE
, vol.9
-
-
Chylek, L.A.1
Akimov, V.2
Dengjel, J.3
Rigbolt, K.T.4
Hu, B.5
Hlavacek, W.S.6
Blagoev, B.7
-
47
-
-
67651229135
-
Large-scale proteomic analysis of tyrosine-phosphorylation induced by T-cell receptor or B-cell receptor activation reveals new signaling pathways
-
Matsumoto M., Oyamada K., Takahashi H., Sato T., Hatakeyama S., Nakayama K.I. Large-scale proteomic analysis of tyrosine-phosphorylation induced by T-cell receptor or B-cell receptor activation reveals new signaling pathways. Proteomics 2009, 9:3549-3563.
-
(2009)
Proteomics
, vol.9
, pp. 3549-3563
-
-
Matsumoto, M.1
Oyamada, K.2
Takahashi, H.3
Sato, T.4
Hatakeyama, S.5
Nakayama, K.I.6
-
48
-
-
33644554807
-
Quantitative analysis of phosphotyrosine signaling networks triggered by CD3 and CD28 costimulation in Jurkat cells
-
Kim J.E., White F.M. Quantitative analysis of phosphotyrosine signaling networks triggered by CD3 and CD28 costimulation in Jurkat cells. J Immunol 2006, 176:2833-2843.
-
(2006)
J Immunol
, vol.176
, pp. 2833-2843
-
-
Kim, J.E.1
White, F.M.2
-
49
-
-
84899524886
-
Global phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas
-
Rolland D., Basrur V., Conlon K., Wolfe T., Fermin D., Nesvizhskii A.I., Lim M.S., Elenitoba-Johnson K.S. Global phosphoproteomic profiling reveals distinct signatures in B-cell non-Hodgkin lymphomas. Am J Pathol 2014, 184:1331-1342.
-
(2014)
Am J Pathol
, vol.184
, pp. 1331-1342
-
-
Rolland, D.1
Basrur, V.2
Conlon, K.3
Wolfe, T.4
Fermin, D.5
Nesvizhskii, A.I.6
Lim, M.S.7
Elenitoba-Johnson, K.S.8
-
50
-
-
84886923713
-
Integrated phosphoproteomic and metabolomic profiling reveals NPM-ALK-mediated phosphorylation of PKM2 and metabolic reprogramming in anaplastic large cell lymphoma
-
McDonnell S.R., Hwang S.R., Rolland D., Murga-Zamalloa C., Basrur V., Conlon K.P., Fermin D., Wolfe T., Raskind A., Ruan C., et al. Integrated phosphoproteomic and metabolomic profiling reveals NPM-ALK-mediated phosphorylation of PKM2 and metabolic reprogramming in anaplastic large cell lymphoma. Blood 2013, 122:958-968.
-
(2013)
Blood
, vol.122
, pp. 958-968
-
-
McDonnell, S.R.1
Hwang, S.R.2
Rolland, D.3
Murga-Zamalloa, C.4
Basrur, V.5
Conlon, K.P.6
Fermin, D.7
Wolfe, T.8
Raskind, A.9
Ruan, C.10
-
51
-
-
70350462371
-
Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions
-
Mayya V., Lundgren D.H., Hwang S.I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. Sci Signal 2009, 2:ra46.
-
(2009)
Sci Signal
, vol.2
, pp. ra46
-
-
Mayya, V.1
Lundgren, D.H.2
Hwang, S.I.3
Rezaul, K.4
Wu, L.5
Eng, J.K.6
Rodionov, V.7
Han, D.K.8
-
52
-
-
84903747405
-
Global phosphoproteomics of activated B cells using complementary metal ion functionalized soluble nanopolymers
-
Jayasundera K.B., Iliuk A.B., Nguyen A., Higgins R., Geahlen R.L., Tao W.A. Global phosphoproteomics of activated B cells using complementary metal ion functionalized soluble nanopolymers. Anal Chem 2014, 86:6363-6371.
-
(2014)
Anal Chem
, vol.86
, pp. 6363-6371
-
-
Jayasundera, K.B.1
Iliuk, A.B.2
Nguyen, A.3
Higgins, R.4
Geahlen, R.L.5
Tao, W.A.6
-
53
-
-
79960917689
-
Phospho-proteomic analysis of mantle cell lymphoma cells suggests a pro-survival role of B-cell receptor signaling
-
Pighi C., Gu T.L., Dalai I., Barbi S., Parolini C., Bertolaso A., Pedron S., Parisi A., Ren J., Cecconi D., et al. Phospho-proteomic analysis of mantle cell lymphoma cells suggests a pro-survival role of B-cell receptor signaling. Cell Oncol 2011, 34:141-153.
-
(2011)
Cell Oncol
, vol.34
, pp. 141-153
-
-
Pighi, C.1
Gu, T.L.2
Dalai, I.3
Barbi, S.4
Parolini, C.5
Bertolaso, A.6
Pedron, S.7
Parisi, A.8
Ren, J.9
Cecconi, D.10
-
54
-
-
80052164672
-
Quantitative phosphoproteomics revealed interplay between Syk and Lyn in the resistance to nilotinib in chronic myeloid leukemia cells
-
Gioia R., Leroy C., Drullion C., Lagarde V., Etienne G., Dulucq S., Lippert E., Roche S., Mahon F.X., Pasquet J.M. Quantitative phosphoproteomics revealed interplay between Syk and Lyn in the resistance to nilotinib in chronic myeloid leukemia cells. Blood 2011, 118:2211-2221.
-
(2011)
Blood
, vol.118
, pp. 2211-2221
-
-
Gioia, R.1
Leroy, C.2
Drullion, C.3
Lagarde, V.4
Etienne, G.5
Dulucq, S.6
Lippert, E.7
Roche, S.8
Mahon, F.X.9
Pasquet, J.M.10
-
55
-
-
79953250081
-
Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling
-
Rubbi L., Titz B., Brown L., Galvan E., Komisopoulou E., Chen S.S., Low T., Tahmasian M., Skaggs B., Muschen M., et al. Global phosphoproteomics reveals crosstalk between Bcr-Abl and negative feedback mechanisms controlling Src signaling. Sci Signal 2011, 4:ra18.
-
(2011)
Sci Signal
, vol.4
, pp. ra18
-
-
Rubbi, L.1
Titz, B.2
Brown, L.3
Galvan, E.4
Komisopoulou, E.5
Chen, S.S.6
Low, T.7
Tahmasian, M.8
Skaggs, B.9
Muschen, M.10
-
56
-
-
84861136348
-
Quantitative phosphoproteomic analysis reveals a role for serine and threonine kinases in the cytoskeletal reorganization in early T cell receptor activation in human primary T cells
-
Ruperez P., Gago-Martinez A., Burlingame A.L., Oses-Prieto J.A. Quantitative phosphoproteomic analysis reveals a role for serine and threonine kinases in the cytoskeletal reorganization in early T cell receptor activation in human primary T cells. Mol Cell Proteomics 2012, 11:171-186.
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 171-186
-
-
Ruperez, P.1
Gago-Martinez, A.2
Burlingame, A.L.3
Oses-Prieto, J.A.4
-
57
-
-
79952962027
-
Phosphoproteomic analysis reveals an intrinsic pathway for the regulation of histone deacetylase 7 that controls the function of cytotoxic T lymphocytes
-
Navarro M.N., Goebel J., Feijoo-Carnero C., Morrice N., Cantrell D.A. Phosphoproteomic analysis reveals an intrinsic pathway for the regulation of histone deacetylase 7 that controls the function of cytotoxic T lymphocytes. Nat Immunol 2011, 12:352-361.
-
(2011)
Nat Immunol
, vol.12
, pp. 352-361
-
-
Navarro, M.N.1
Goebel, J.2
Feijoo-Carnero, C.3
Morrice, N.4
Cantrell, D.A.5
-
58
-
-
84899801182
-
Phosphoproteomic analyses reveal that galectin-1 augments the dynamics of B-cell receptor signaling
-
Tsai C.M., Wu H.Y., Su T.H., Kuo C.W., Huang H.W., Chung C.H., Chen C.S., Khoo K.H., Chen Y.J., Lin K.I. Phosphoproteomic analyses reveal that galectin-1 augments the dynamics of B-cell receptor signaling. J Proteomics 2014, 103:241-253.
-
(2014)
J Proteomics
, vol.103
, pp. 241-253
-
-
Tsai, C.M.1
Wu, H.Y.2
Su, T.H.3
Kuo, C.W.4
Huang, H.W.5
Chung, C.H.6
Chen, C.S.7
Khoo, K.H.8
Chen, Y.J.9
Lin, K.I.10
-
59
-
-
84893858518
-
Mercury alters B-cell protein phosphorylation profiles
-
Caruthers N.J., Stemmer P.M., Shin N., Dombkowski A., Caruso J.A., Gill R., Rosenspire A. Mercury alters B-cell protein phosphorylation profiles. J Proteome Res 2014, 13:496-505.
-
(2014)
J Proteome Res
, vol.13
, pp. 496-505
-
-
Caruthers, N.J.1
Stemmer, P.M.2
Shin, N.3
Dombkowski, A.4
Caruso, J.A.5
Gill, R.6
Rosenspire, A.7
-
60
-
-
0000109995
-
Transforming gene product of Rous sarcoma virus phosphorylates tyrosine
-
Hunter T., Sefton B.M. Transforming gene product of Rous sarcoma virus phosphorylates tyrosine. Proc Natl Acad Sci U S A 1980, 77:1311-1315.
-
(1980)
Proc Natl Acad Sci U S A
, vol.77
, pp. 1311-1315
-
-
Hunter, T.1
Sefton, B.M.2
-
61
-
-
77954572010
-
Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice
-
Iwai L.K., Benoist C., Mathis D., White F.M. Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice. J Proteome Res 2010, 9:3135-3145.
-
(2010)
J Proteome Res
, vol.9
, pp. 3135-3145
-
-
Iwai, L.K.1
Benoist, C.2
Mathis, D.3
White, F.M.4
-
63
-
-
84882254552
-
Deciphering the complex: methodological overview of statistical models to derive OMICS-based biomarkers
-
Chadeau-Hyam M., Campanella G., Jombart T., Bottolo L., Portengen L., Vineis P., Liquet B., Vermeulen R.C. Deciphering the complex: methodological overview of statistical models to derive OMICS-based biomarkers. Environ Mol Mutagen 2013, 54:542-557.
-
(2013)
Environ Mol Mutagen
, vol.54
, pp. 542-557
-
-
Chadeau-Hyam, M.1
Campanella, G.2
Jombart, T.3
Bottolo, L.4
Portengen, L.5
Vineis, P.6
Liquet, B.7
Vermeulen, R.C.8
-
64
-
-
0345822598
-
The positive false discovery rate: a Bayesian interpretation and the q-value
-
Storey J.D. The positive false discovery rate: a Bayesian interpretation and the q-value. Ann Stat 2003, 31:2013-2035.
-
(2003)
Ann Stat
, vol.31
, pp. 2013-2035
-
-
Storey, J.D.1
-
65
-
-
84889805348
-
Staurosporine-derived inhibitors broaden the scope of analog-sensitive kinase technology
-
Lopez M.S., Choy J.W., Peters U., Sos M.L., Morgan D.O., Shokat K.M. Staurosporine-derived inhibitors broaden the scope of analog-sensitive kinase technology. J Am Chem Soc 2013, 135:18153-18159.
-
(2013)
J Am Chem Soc
, vol.135
, pp. 18153-18159
-
-
Lopez, M.S.1
Choy, J.W.2
Peters, U.3
Sos, M.L.4
Morgan, D.O.5
Shokat, K.M.6
-
66
-
-
84892719664
-
Inhibition of the kinase Csk in thymocytes reveals a requirement for actin remodeling in the initiation of full TCR signaling
-
Tan Y.X., Manz B.N., Freedman T.S., Zhang C., Shokat K.M., Weiss A. Inhibition of the kinase Csk in thymocytes reveals a requirement for actin remodeling in the initiation of full TCR signaling. Nat Immunol 2014, 15:186-194.
-
(2014)
Nat Immunol
, vol.15
, pp. 186-194
-
-
Tan, Y.X.1
Manz, B.N.2
Freedman, T.S.3
Zhang, C.4
Shokat, K.M.5
Weiss, A.6
-
67
-
-
84907228126
-
A sharp T-cell antigen receptor signaling threshold for T-cell proliferation
-
Au-Yeung B.B., Zikherman J., Mueller J.L., Ashouri J.F., Matloubian M., Cheng D.A., Chen Y., Shokat K.M., Weiss A. A sharp T-cell antigen receptor signaling threshold for T-cell proliferation. Proc Natl Acad Sci U S A 2014, 111:E3679-E3688.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. E3679-E3688
-
-
Au-Yeung, B.B.1
Zikherman, J.2
Mueller, J.L.3
Ashouri, J.F.4
Matloubian, M.5
Cheng, D.A.6
Chen, Y.7
Shokat, K.M.8
Weiss, A.9
-
68
-
-
77952406753
-
QIKS - quantitative identification of kinase substrates
-
Morandell S., Grosstessner-Hain K., Roitinger E., Hudecz O., Lindhorst T., Teis D., Wrulich O.A., Mazanek M., Taus T., Ueberall F., et al. QIKS - quantitative identification of kinase substrates. Proteomics 2010, 10:2015-2025.
-
(2010)
Proteomics
, vol.10
, pp. 2015-2025
-
-
Morandell, S.1
Grosstessner-Hain, K.2
Roitinger, E.3
Hudecz, O.4
Lindhorst, T.5
Teis, D.6
Wrulich, O.A.7
Mazanek, M.8
Taus, T.9
Ueberall, F.10
-
69
-
-
79959735228
-
Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells
-
Kettenbach A.N., Schweppe D.K., Faherty B.K., Pechenick D., Pletnev A.A., Gerber S.A. Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells. Sci Signal 2011, 4:rs5.
-
(2011)
Sci Signal
, vol.4
, pp. rs5
-
-
Kettenbach, A.N.1
Schweppe, D.K.2
Faherty, B.K.3
Pechenick, D.4
Pletnev, A.A.5
Gerber, S.A.6
-
70
-
-
84859608002
-
Sensitive kinase assay linked with phosphoproteomics for identifying direct kinase substrates
-
Xue L., Wang W.H., Iliuk A., Hu L., Galan J.A., Yu S., Hans M., Geahlen R.L., Tao W.A. Sensitive kinase assay linked with phosphoproteomics for identifying direct kinase substrates. Proc Natl Acad Sci U S A 2012, 109:5615-5620.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 5615-5620
-
-
Xue, L.1
Wang, W.H.2
Iliuk, A.3
Hu, L.4
Galan, J.A.5
Yu, S.6
Hans, M.7
Geahlen, R.L.8
Tao, W.A.9
-
71
-
-
84871590810
-
Using bacteria to determine protein kinase specificity and predict target substrates
-
Chou M.F., Prisic S., Lubner J.M., Church G.M., Husson R.N., Schwartz D. Using bacteria to determine protein kinase specificity and predict target substrates. PLOS ONE 2012, 7:e52747.
-
(2012)
PLOS ONE
, vol.7
-
-
Chou, M.F.1
Prisic, S.2
Lubner, J.M.3
Church, G.M.4
Husson, R.N.5
Schwartz, D.6
-
72
-
-
84861592048
-
Rapid determination of multiple linear kinase substrate motifs by mass spectrometry
-
Kettenbach A.N., Wang T., Faherty B.K., Madden D.R., Knapp S., Bailey-Kellogg C., Gerber S.A. Rapid determination of multiple linear kinase substrate motifs by mass spectrometry. Chem Biol 2012, 19:608-618.
-
(2012)
Chem Biol
, vol.19
, pp. 608-618
-
-
Kettenbach, A.N.1
Wang, T.2
Faherty, B.K.3
Madden, D.R.4
Knapp, S.5
Bailey-Kellogg, C.6
Gerber, S.A.7
-
73
-
-
84863875747
-
A novel whole-cell lysate kinase assay identifies substrates of the p38 MAPK in differentiating myoblasts
-
Knight J.D., Tian R., Lee R.E., Wang F., Beauvais A., Zou H., Megeney L.A., Gingras A.C., Pawson T., Figeys D., et al. A novel whole-cell lysate kinase assay identifies substrates of the p38 MAPK in differentiating myoblasts. Skelet Muscle 2012, 2:5.
-
(2012)
Skelet Muscle
, vol.2
, pp. 5
-
-
Knight, J.D.1
Tian, R.2
Lee, R.E.3
Wang, F.4
Beauvais, A.5
Zou, H.6
Megeney, L.A.7
Gingras, A.C.8
Pawson, T.9
Figeys, D.10
-
74
-
-
84896708757
-
A comparative study of ATP analogs for phosphorylation-dependent kinase-substrate crosslinking
-
Garre S., Senevirathne C., Pflum M.K. A comparative study of ATP analogs for phosphorylation-dependent kinase-substrate crosslinking. Bioorg Med Chem 2014, 22:1620-1625.
-
(2014)
Bioorg Med Chem
, vol.22
, pp. 1620-1625
-
-
Garre, S.1
Senevirathne, C.2
Pflum, M.K.3
-
75
-
-
84885115150
-
Identification of direct tyrosine kinase substrates based on protein kinase assay-linked phosphoproteomics
-
Xue L., Geahlen R.L., Tao W.A. Identification of direct tyrosine kinase substrates based on protein kinase assay-linked phosphoproteomics. Mol Cell Proteomics 2013, 12:2969-2980.
-
(2013)
Mol Cell Proteomics
, vol.12
, pp. 2969-2980
-
-
Xue, L.1
Geahlen, R.L.2
Tao, W.A.3
-
76
-
-
84910626377
-
Identification of ERK1 direct substrates using stable isotope labeled kinase assay-linked phosphoproteomics
-
Xue L., Wang P., Cao P., Zhu J.K., Tao W.A. Identification of ERK1 direct substrates using stable isotope labeled kinase assay-linked phosphoproteomics. Mol Cell Proteomics 2014, 13:3199-3210.
-
(2014)
Mol Cell Proteomics
, vol.13
, pp. 3199-3210
-
-
Xue, L.1
Wang, P.2
Cao, P.3
Zhu, J.K.4
Tao, W.A.5
-
77
-
-
84899929564
-
Heterogeneity in immune responses: from populations to single cells
-
Satija R., Shalek A.K. Heterogeneity in immune responses: from populations to single cells. Trends Immunol 2014, 35:219-229.
-
(2014)
Trends Immunol
, vol.35
, pp. 219-229
-
-
Satija, R.1
Shalek, A.K.2
-
78
-
-
84884138622
-
Single-cell mass cytometry for analysis of immune system functional states
-
Bjornson Z.B., Nolan G.P., Fantl W.J. Single-cell mass cytometry for analysis of immune system functional states. Curr Opin Immunol 2013, 25:484-494.
-
(2013)
Curr Opin Immunol
, vol.25
, pp. 484-494
-
-
Bjornson, Z.B.1
Nolan, G.P.2
Fantl, W.J.3
-
79
-
-
84892687815
-
Single-cell technologies for monitoring immune systems
-
Chattopadhyay P.K., Gierahn T.M., Roederer M., Love J.C. Single-cell technologies for monitoring immune systems. Nat Immunol 2014, 15:128-135.
-
(2014)
Nat Immunol
, vol.15
, pp. 128-135
-
-
Chattopadhyay, P.K.1
Gierahn, T.M.2
Roederer, M.3
Love, J.C.4
-
80
-
-
79955750055
-
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
-
Bendall S.C., Simonds E.F., Qiu P., Amir el A.D., Krutzik P.O., Finck R., Bruggner R.V., Melamed R., Trejo A., Ornatsky O.I., et al. Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science 2011, 332:687-696.
-
(2011)
Science
, vol.332
, pp. 687-696
-
-
Bendall, S.C.1
Simonds, E.F.2
Qiu, P.3
Amir el, A.D.4
Krutzik, P.O.5
Finck, R.6
Bruggner, R.V.7
Melamed, R.8
Trejo, A.9
Ornatsky, O.I.10
-
81
-
-
84880280631
-
ViSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
-
Amir el A.D., Davis K.L., Tadmor M.D., Simonds E.F., Levine J.H., Bendall S.C., Shenfeld D.K., Krishnaswamy S., Nolan G.P., Pe'er D. viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia. Nat Biotechnol 2013, 31:545-552.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 545-552
-
-
Amir el, A.D.1
Davis, K.L.2
Tadmor, M.D.3
Simonds, E.F.4
Levine, J.H.5
Bendall, S.C.6
Shenfeld, D.K.7
Krishnaswamy, S.8
Nolan, G.P.9
Pe'er, D.10
-
82
-
-
84896503384
-
Antigen-dependent integration of opposing proximal TCR-signaling cascades determines the functional fate of T lymphocytes
-
Wolchinsky R., Hod-Marco M., Oved K., Shen-Orr S.S., Bendall S.C., Nolan G.P., Reiter Y. Antigen-dependent integration of opposing proximal TCR-signaling cascades determines the functional fate of T lymphocytes. J Immunol 2014, 192:2109-2119.
-
(2014)
J Immunol
, vol.192
, pp. 2109-2119
-
-
Wolchinsky, R.1
Hod-Marco, M.2
Oved, K.3
Shen-Orr, S.S.4
Bendall, S.C.5
Nolan, G.P.6
Reiter, Y.7
|