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Volumn 184, Issue 5, 2014, Pages 1331-1342

Global phosphoproteomic profiling reveals distinct signatures in B-cell non-hodgkin lymphomas

Author keywords

[No Author keywords available]

Indexed keywords

ABELSON KINASE; B LYMPHOCYTE RECEPTOR; CYCLIN DEPENDENT KINASE; CYCLIN DEPENDENT KINASE 11A; EPHRIN RECEPTOR A7; JANUS KINASE 3; PHOSPHOPEPTIDE; PHOSPHOPROTEIN; PHOSPHOPROTEIN ASSOCIATED WITH GLYCOSPHINGOLIPID ENRICHED MICRODOMAIN 1; PROTEIN CDC42; PROTEIN KINASE LCK; PROTEIN KINASE LYN; PROTEIN KINASE SYK; PROTEIN KINASE TYK2; SCATTER FACTOR RECEPTOR; UNCLASSIFIED DRUG; LYN PROTEIN-TYROSINE KINASE; MEMBRANE PROTEIN; PAG1 PROTEIN, HUMAN; PROTEIN TYROSINE KINASE; SIGNAL TRANSDUCING ADAPTOR PROTEIN; TUMOR ANTIGEN;

EID: 84899524886     PISSN: 00029440     EISSN: 15252191     Source Type: Journal    
DOI: 10.1016/j.ajpath.2014.01.036     Document Type: Article
Times cited : (25)

References (55)
  • 1
    • 0034614490 scopus 로고    scopus 로고
    • Signaling-2000 and beyond
    • T. Hunter Signaling-2000 and beyond Cell 100 2000 113 127
    • (2000) Cell , vol.100 , pp. 113-127
    • Hunter, T.1
  • 2
    • 0034644539 scopus 로고    scopus 로고
    • Cell signaling by receptor tyrosine kinases
    • J. Schlessinger Cell signaling by receptor tyrosine kinases Cell 103 2000 211 225
    • (2000) Cell , vol.103 , pp. 211-225
    • Schlessinger, J.1
  • 3
    • 0035902180 scopus 로고    scopus 로고
    • Oncogenic kinase signalling
    • P. Blume-Jensen, and T. Hunter Oncogenic kinase signalling Nature 411 2001 355 365
    • (2001) Nature , vol.411 , pp. 355-365
    • Blume-Jensen, P.1    Hunter, T.2
  • 4
    • 78349310118 scopus 로고    scopus 로고
    • Phosphoproteomics in cancer
    • H.C. Harsha, and A. Pandey Phosphoproteomics in cancer Mol Oncol 4 2010 482 495
    • (2010) Mol Oncol , vol.4 , pp. 482-495
    • Harsha, H.C.1    Pandey, A.2
  • 12
    • 65249137629 scopus 로고    scopus 로고
    • Global and site-specific quantitative phosphoproteomics: Principles and applications
    • B. Macek, M. Mann, and J.V. Olsen Global and site-specific quantitative phosphoproteomics: principles and applications Annu Rev Pharmacol Toxicol 49 2009 199 221
    • (2009) Annu Rev Pharmacol Toxicol , vol.49 , pp. 199-221
    • Macek, B.1    Mann, M.2    Olsen, J.V.3
  • 13
    • 24944519450 scopus 로고    scopus 로고
    • Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns
    • M.R. Larsen, T.E. Thingholm, O.N. Jensen, P. Roepstorff, and T.J. Jorgensen Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns Mol Cell Proteomics 4 2005 873 886
    • (2005) Mol Cell Proteomics , vol.4 , pp. 873-886
    • Larsen, M.R.1    Thingholm, T.E.2    Jensen, O.N.3    Roepstorff, P.4    Jorgensen, T.J.5
  • 16
    • 54949129419 scopus 로고    scopus 로고
    • ProteoWizard: Open source software for rapid proteomics tools development
    • D. Kessner, M. Chambers, R. Burke, D. Agus, and P. Mallick ProteoWizard: open source software for rapid proteomics tools development Bioinformatics 24 2008 2534 2536
    • (2008) Bioinformatics , vol.24 , pp. 2534-2536
    • Kessner, D.1    Chambers, M.2    Burke, R.3    Agus, D.4    Mallick, P.5
  • 17
    • 0037442649 scopus 로고    scopus 로고
    • A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
    • D. Fenyo, and R.C. Beavis A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes Anal Chem 75 2003 768 774
    • (2003) Anal Chem , vol.75 , pp. 768-774
    • Fenyo, D.1    Beavis, R.C.2
  • 18
    • 33750979860 scopus 로고    scopus 로고
    • General framework for developing and evaluating database scoring algorithms using the TANDEM search engine
    • B. MacLean, J.K. Eng, R.C. Beavis, and M. McIntosh General framework for developing and evaluating database scoring algorithms using the TANDEM search engine Bioinformatics 22 2006 2830 2832
    • (2006) Bioinformatics , vol.22 , pp. 2830-2832
    • Maclean, B.1    Eng, J.K.2    Beavis, R.C.3    McIntosh, M.4
  • 19
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • A. Keller, A.I. Nesvizhskii, E. Kolker, and R. Aebersold Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal Chem 74 2002 5383 5392
    • (2002) Anal Chem , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 20
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • A.I. Nesvizhskii, A. Keller, E. Kolker, and R. Aebersold A statistical model for identifying proteins by tandem mass spectrometry Anal Chem 75 2003 4646 4658
    • (2003) Anal Chem , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 21
    • 77449122863 scopus 로고    scopus 로고
    • Trans-proteomic pipeline: A pipeline for proteomic analysis
    • P.G. Pedrioli Trans-proteomic pipeline: a pipeline for proteomic analysis Methods Mol Biol 604 2010 213 238
    • (2010) Methods Mol Biol , vol.604 , pp. 213-238
    • Pedrioli, P.G.1
  • 22
    • 79953062776 scopus 로고    scopus 로고
    • Abacus: A computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis
    • D. Fermin, V. Basrur, A.K. Yocum, and A.I. Nesvizhskii Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis Proteomics 11 2011 1340 1345
    • (2011) Proteomics , vol.11 , pp. 1340-1345
    • Fermin, D.1    Basrur, V.2    Yocum, A.K.3    Nesvizhskii, A.I.4
  • 23
    • 33749853607 scopus 로고    scopus 로고
    • A probability-based approach for high-throughput protein phosphorylation analysis and site localization
    • S.A. Beausoleil, J. Villen, S.A. Gerber, J. Rush, and S.P. Gygi A probability-based approach for high-throughput protein phosphorylation analysis and site localization Nat Biotechnol 24 2006 1285 1292
    • (2006) Nat Biotechnol , vol.24 , pp. 1285-1292
    • Beausoleil, S.A.1    Villen, J.2    Gerber, S.A.3    Rush, J.4    Gygi, S.P.5
  • 25
    • 61649126270 scopus 로고    scopus 로고
    • Predicting protein post-translational modifications using meta-analysis of proteome scale data sets
    • D. Schwartz, M.F. Chou, and G.M. Church Predicting protein post-translational modifications using meta-analysis of proteome scale data sets Mol Cell Proteomics 8 2009 365 379
    • (2009) Mol Cell Proteomics , vol.8 , pp. 365-379
    • Schwartz, D.1    Chou, M.F.2    Church, G.M.3
  • 26
    • 33745612095 scopus 로고    scopus 로고
    • Pvclust: An R package for assessing the uncertainty in hierarchical clustering
    • R. Suzuki, and H. Shimodaira Pvclust: an R package for assessing the uncertainty in hierarchical clustering Bioinformatics 22 2006 1540 1542
    • (2006) Bioinformatics , vol.22 , pp. 1540-1542
    • Suzuki, R.1    Shimodaira, H.2
  • 28
    • 84855410078 scopus 로고    scopus 로고
    • Wnt5a is secreted by follicular dendritic cells to protect germinal center B cells via Wnt/Ca2+/NFAT/NF-kappaB-B cell lymphoma 6 signaling
    • J. Kim, D.W. Kim, W. Chang, J. Choe, C.S. Park, K. Song, and I. Lee Wnt5a is secreted by follicular dendritic cells to protect germinal center B cells via Wnt/Ca2+/NFAT/NF-kappaB-B cell lymphoma 6 signaling J Immunol 188 2012 182 189
    • (2012) J Immunol , vol.188 , pp. 182-189
    • Kim, J.1    Kim, D.W.2    Chang, W.3    Choe, J.4    Park, C.S.5    Song, K.6    Lee, I.7
  • 29
    • 44049105823 scopus 로고    scopus 로고
    • Transcription factor Mef2c is required for B cell proliferation and survival after antigen receptor stimulation
    • P.R. Wilker, M. Kohyama, M.M. Sandau, J.C. Albring, O. Nakagawa, J.J. Schwarz, and K.M. Murphy Transcription factor Mef2c is required for B cell proliferation and survival after antigen receptor stimulation Nat Immunol 9 2008 603 612
    • (2008) Nat Immunol , vol.9 , pp. 603-612
    • Wilker, P.R.1    Kohyama, M.2    Sandau, M.M.3    Albring, J.C.4    Nakagawa, O.5    Schwarz, J.J.6    Murphy, K.M.7
  • 33
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • W. Huang da, B.T. Sherman, and R.A. Lempicki Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat Protoc 4 2009 44 57
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 34
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • W. Huang da, B.T. Sherman, and R.A. Lempicki Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists Nucleic Acids Res 37 2009 1 13
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 35
    • 0034703099 scopus 로고    scopus 로고
    • Transmembrane phosphoprotein Cbp positively regulates the activity of the carboxyl-terminal Src kinase, Csk
    • S. Takeuchi, Y. Takayama, A. Ogawa, K. Tamura, and M. Okada Transmembrane phosphoprotein Cbp positively regulates the activity of the carboxyl-terminal Src kinase, Csk J Biol Chem 275 2000 29183 29186
    • (2000) J Biol Chem , vol.275 , pp. 29183-29186
    • Takeuchi, S.1    Takayama, Y.2    Ogawa, A.3    Tamura, K.4    Okada, M.5
  • 36
    • 0342313755 scopus 로고    scopus 로고
    • Phosphoprotein associated with glycosphingolipid-enriched microdomains (PAG), a novel ubiquitously expressed transmembrane adaptor protein, binds the protein tyrosine kinase csk and is involved in regulation of T cell activation
    • T. Brdicka, D. Pavlistova, A. Leo, E. Bruyns, V. Korinek, P. Angelisova, J. Scherer, A. Shevchenko, I. Hilgert, J. Cerny, K. Drbal, Y. Kuramitsu, B. Kornacker, V. Horejsi, and B. Schraven Phosphoprotein associated with glycosphingolipid-enriched microdomains (PAG), a novel ubiquitously expressed transmembrane adaptor protein, binds the protein tyrosine kinase csk and is involved in regulation of T cell activation J Exp Med 191 2000 1591 1604
    • (2000) J Exp Med , vol.191 , pp. 1591-1604
    • Brdicka, T.1    Pavlistova, D.2    Leo, A.3    Bruyns, E.4    Korinek, V.5    Angelisova, P.6    Scherer, J.7    Shevchenko, A.8    Hilgert, I.9    Cerny, J.10    Drbal, K.11    Kuramitsu, Y.12    Kornacker, B.13    Horejsi, V.14    Schraven, B.15
  • 38
    • 47249099558 scopus 로고    scopus 로고
    • B lymphocytes: How they develop and function
    • T.W. LeBien, and T.F. Tedder B lymphocytes: how they develop and function Blood 112 2008 1570 1580
    • (2008) Blood , vol.112 , pp. 1570-1580
    • Lebien, T.W.1    Tedder, T.F.2
  • 39
    • 16844381831 scopus 로고    scopus 로고
    • Mechanisms of B-cell lymphoma pathogenesis
    • R. Kuppers Mechanisms of B-cell lymphoma pathogenesis Nat Rev Cancer 5 2005 251 262
    • (2005) Nat Rev Cancer , vol.5 , pp. 251-262
    • Kuppers, R.1
  • 43
    • 73849145729 scopus 로고    scopus 로고
    • Chronic active B-cell-receptor signalling in diffuse large B-cell lymphoma
    • R.E. Davis, V.N. Ngo, G. Lenz, P. Tolar, R.M. Young, and P.B. Romesser et al. Chronic active B-cell-receptor signalling in diffuse large B-cell lymphoma Nature 463 2010 88 92
    • (2010) Nature , vol.463 , pp. 88-92
    • Davis, R.E.1    Ngo, V.N.2    Lenz, G.3    Tolar, P.4    Young, R.M.5    Romesser, P.B.6
  • 45
    • 77956335423 scopus 로고    scopus 로고
    • Target discovery: Blocking BTK in B-cell disorders
    • A. Flemming Target discovery: blocking BTK in B-cell disorders Nat Rev Drug Discov 9 2010 681
    • (2010) Nat Rev Drug Discov , vol.9 , pp. 681
    • Flemming, A.1
  • 47
    • 78751558912 scopus 로고    scopus 로고
    • The transmembrane adaptor Cbp/PAG1 controls the malignant potential of human non-small cell lung cancers that have c-src upregulation
    • T. Kanou, C. Oneyama, K. Kawahara, A. Okimura, M. Ohta, N. Ikeda, Y. Shintani, M. Okumura, and M. Okada The transmembrane adaptor Cbp/PAG1 controls the malignant potential of human non-small cell lung cancers that have c-src upregulation Mol Cancer Res 9 2011 103 114
    • (2011) Mol Cancer Res , vol.9 , pp. 103-114
    • Kanou, T.1    Oneyama, C.2    Kawahara, K.3    Okimura, A.4    Ohta, M.5    Ikeda, N.6    Shintani, Y.7    Okumura, M.8    Okada, M.9
  • 50
    • 0038054536 scopus 로고    scopus 로고
    • Adaptor proteins in lymphocyte activation
    • E. Janssen, and W. Zhang Adaptor proteins in lymphocyte activation Curr Opin Immunol 15 2003 269 276
    • (2003) Curr Opin Immunol , vol.15 , pp. 269-276
    • Janssen, E.1    Zhang, W.2
  • 51
    • 34547116642 scopus 로고    scopus 로고
    • A novel negative regulatory function of the phosphoprotein associated with glycosphingolipid-enriched microdomains: Blocking Ras activation
    • M. Smida, A. Posevitz-Fejfar, V. Horejsi, B. Schraven, and J.A. Lindquist A novel negative regulatory function of the phosphoprotein associated with glycosphingolipid-enriched microdomains: blocking Ras activation Blood 110 2007 596 615
    • (2007) Blood , vol.110 , pp. 596-615
    • Smida, M.1    Posevitz-Fejfar, A.2    Horejsi, V.3    Schraven, B.4    Lindquist, J.A.5
  • 53
    • 24344486854 scopus 로고    scopus 로고
    • Expression pattern of adaptor protein PAG: Correlation between secondary lymphatic follicle and histogenetically related malignant lymphomas
    • A. Svec, Z. Velenska, and V. Horejsi Expression pattern of adaptor protein PAG: correlation between secondary lymphatic follicle and histogenetically related malignant lymphomas Immunol Lett 100 2005 94 97
    • (2005) Immunol Lett , vol.100 , pp. 94-97
    • Svec, A.1    Velenska, Z.2    Horejsi, V.3
  • 54
    • 34247189616 scopus 로고    scopus 로고
    • Expression of transmembrane adaptor protein PAG/Cbp in diffuse large B-cell lymphoma: Immunohistochemical study of 73 cases
    • A. Svec Expression of transmembrane adaptor protein PAG/Cbp in diffuse large B-cell lymphoma: immunohistochemical study of 73 cases Pathol Res Pract 203 2007 193 198
    • (2007) Pathol Res Pract , vol.203 , pp. 193-198
    • Svec, A.1
  • 55
    • 51749107470 scopus 로고    scopus 로고
    • Interactions between the Fyn SH3-domain and adaptor protein Cbp/PAG derived ligands, effects on kinase activity and affinity
    • S.A. Solheim, E. Petsalaki, A.J. Stokka, R.B. Russell, K. Tasken, and T. Berge Interactions between the Fyn SH3-domain and adaptor protein Cbp/PAG derived ligands, effects on kinase activity and affinity FEBS J 275 2008 4863 4874
    • (2008) FEBS J , vol.275 , pp. 4863-4874
    • Solheim, S.A.1    Petsalaki, E.2    Stokka, A.J.3    Russell, R.B.4    Tasken, K.5    Berge, T.6


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