메뉴 건너뛰기




Volumn 98, Issue 2, 2015, Pages 804-812

Development of a rapid SNP-typing assay to differentiate Bifidobacterium animalis ssp. lactis strains used in probiotic-supplemented dairy products

Author keywords

Bifidobacterium animalis ssp. lactis; Molecular subtyping; Probiotic; Single nucleotide polymorphism (SNP) minisequencing

Indexed keywords

BIFIDOBACTERIUM ANIMALIS;

EID: 84922330585     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2014-8509     Document Type: Article
Times cited : (13)

References (40)
  • 2
    • 77950468839 scopus 로고    scopus 로고
    • Development of a multiplex primer extension assay for rapid detection of Salmonella isolates of diverse serotypes
    • Ben-Darif E., Jury F., De Pinna E., Threlfall E.J., Bolton F.J., Fox A.J., Upton M. Development of a multiplex primer extension assay for rapid detection of Salmonella isolates of diverse serotypes. J. Clin. Microbiol. 2010, 48:1055-1060. http://dx.doi.org/10.1128/JCM.01566-09.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 1055-1060
    • Ben-Darif, E.1    Jury, F.2    De Pinna, E.3    Threlfall, E.J.4    Bolton, F.J.5    Fox, A.J.6    Upton, M.7
  • 4
    • 72949103486 scopus 로고    scopus 로고
    • Strain-specific genotyping of Bifidobacterium animalis ssp. lactis by using single-nucleotide polymorphisms, insertions, and deletions
    • Briczinski E.P., Loquasto J.R., Barrangou R., Dudley E.G., Roberts A.M., Roberts R.F. Strain-specific genotyping of Bifidobacterium animalis ssp. lactis by using single-nucleotide polymorphisms, insertions, and deletions. Appl. Environ. Microbiol. 2009, 75:7501-7508. http://dx.doi.org/10.1128/AEM.01430-09.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7501-7508
    • Briczinski, E.P.1    Loquasto, J.R.2    Barrangou, R.3    Dudley, E.G.4    Roberts, A.M.5    Roberts, R.F.6
  • 5
    • 33745909433 scopus 로고    scopus 로고
    • Technical note: A rapid pulsed-field gel electrophoresis method for analysis of Bifidobacteria
    • Briczinski E.P., Roberts R.F. Technical note: A rapid pulsed-field gel electrophoresis method for analysis of Bifidobacteria. J. Dairy Sci. 2006, 89:2424-2427.
    • (2006) J. Dairy Sci. , vol.89 , pp. 2424-2427
    • Briczinski, E.P.1    Roberts, R.F.2
  • 7
    • 57649215852 scopus 로고    scopus 로고
    • Multiplex primer-extension assay for identification of six pathogenic vibrios
    • Dalmasso A., Civera T., Bottero M.T. Multiplex primer-extension assay for identification of six pathogenic vibrios. Int. J. Food Microbiol. 2009, 129:21-25. http://dx.doi.org/10.1016/j.ijfoodmicro.2008.10.029.
    • (2009) Int. J. Food Microbiol. , vol.129 , pp. 21-25
    • Dalmasso, A.1    Civera, T.2    Bottero, M.T.3
  • 8
    • 77952337851 scopus 로고    scopus 로고
    • Development of a biomolecular assay for the identification of Listeria at species level
    • Dalmasso A., Rantsiou K., Cocolin L., Bottero M.T. Development of a biomolecular assay for the identification of Listeria at species level. Foodborne Pathog. Dis. 2010, 7:565-571. http://dx.doi.org/10.1089/fpd.2009.0456.
    • (2010) Foodborne Pathog. Dis. , vol.7 , pp. 565-571
    • Dalmasso, A.1    Rantsiou, K.2    Cocolin, L.3    Bottero, M.T.4
  • 10
    • 0010369584 scopus 로고    scopus 로고
    • Guidelines for the evaluation of probiotics in food. Report of a joint FAO/WHO working group on drafting guidelines for the evaluation of probiotics in food
    • London, ON, Canada, 2002. Accessed Sep. 19, 2014
    • FAO/WHO. 2002. Guidelines for the evaluation of probiotics in food. Report of a joint FAO/WHO working group on drafting guidelines for the evaluation of probiotics in food. London, ON, Canada, 2002. Accessed Sep. 19, 2014. ftp://ftp.fao.org/es/esn/food/wgreport2.pdf.
    • (2002)
  • 11
    • 77951062738 scopus 로고    scopus 로고
    • Complete genome sequence of Bifidobacterium animalis ssp. lactis BB-12, a widely consumed probiotic strain
    • Garrigues C., Johansen E., Pedersen M.B. Complete genome sequence of Bifidobacterium animalis ssp. lactis BB-12, a widely consumed probiotic strain. J. Bacteriol. 2010, 192:2467-2468. http://dx.doi.org/10.1128/JB.00109-10.
    • (2010) J. Bacteriol. , vol.192 , pp. 2467-2468
    • Garrigues, C.1    Johansen, E.2    Pedersen, M.B.3
  • 12
    • 46149090818 scopus 로고    scopus 로고
    • Rapid identification of Brucella isolates to the species level by real time PCR based single nucleotide polymorphism (SNP) analysis
    • Gopaul K.K., Koylass M.S., Smith C.J., Whatmore A.M. Rapid identification of Brucella isolates to the species level by real time PCR based single nucleotide polymorphism (SNP) analysis. BMC Microbiol. 2008, 8:86. http://dx.doi.org/10.1186/1471-2180-8-86.
    • (2008) BMC Microbiol. , vol.8 , pp. 86
    • Gopaul, K.K.1    Koylass, M.S.2    Smith, C.J.3    Whatmore, A.M.4
  • 13
    • 79955895038 scopus 로고    scopus 로고
    • Detection of virulent Escherichia coli O157 strains using multiplex PCR and single base sequencing for SNP characterization
    • Haugum K., Brandal L.T., Lobersli I., Kapperud G., Lindstedt B.A. Detection of virulent Escherichia coli O157 strains using multiplex PCR and single base sequencing for SNP characterization. J. Appl. Microbiol. 2011, 110:1592-1600. http://dx.doi.org/10.1111/j.1365-2672.2011.05015.x.
    • (2011) J. Appl. Microbiol. , vol.110 , pp. 1592-1600
    • Haugum, K.1    Brandal, L.T.2    Lobersli, I.3    Kapperud, G.4    Lindstedt, B.A.5
  • 14
    • 79959801039 scopus 로고    scopus 로고
    • Application of the SNaPshot minisequencing assay to species identification in the Lactobacillus casei group
    • Huang C.H., Chang M.T., Huang M.C., Lee F.L. Application of the SNaPshot minisequencing assay to species identification in the Lactobacillus casei group. Mol. Cell. Probes 2011, 25:153-157. a http://dx.doi.org/10.1016/j.mcp.2011.03.002.
    • (2011) Mol. Cell. Probes , vol.25 , pp. 153-157
    • Huang, C.H.1    Chang, M.T.2    Huang, M.C.3    Lee, F.L.4
  • 15
    • 83155175406 scopus 로고    scopus 로고
    • Rapid identification of Lactobacillus plantarum group using the SNaPshot minisequencing assay
    • Huang C.H., Chang M.T., Huang M.C., Lee F.L. Rapid identification of Lactobacillus plantarum group using the SNaPshot minisequencing assay. Syst. Appl. Microbiol. 2011, 34:586-589. b http://dx.doi.org/10.1016/j.syapm.2011.02.006.
    • (2011) Syst. Appl. Microbiol. , vol.34 , pp. 586-589
    • Huang, C.H.1    Chang, M.T.2    Huang, M.C.3    Lee, F.L.4
  • 16
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typying systems: an application of Simpson's index of diversity
    • Hunter P.R., Gaston M.A. Numerical index of the discriminatory ability of typying systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 1988, 26:2465-2466.
    • (1988) J. Clin. Microbiol. , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 17
    • 0034807791 scopus 로고    scopus 로고
    • New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequence
    • Jian W., Zhu L., Dong X. New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequence. Int. J. Syst. Evol. Microbiol. 2001, 51:1633-1638.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1633-1638
    • Jian, W.1    Zhu, L.2    Dong, X.3
  • 19
    • 0002422062 scopus 로고
    • Methods for enumerating and propagating bifidobacteria
    • Laroia S., Martin J.H. Methods for enumerating and propagating bifidobacteria. Cult. Dairy Prod. J. 1991, 26:32-34.
    • (1991) Cult. Dairy Prod. J. , vol.26 , pp. 32-34
    • Laroia, S.1    Martin, J.H.2
  • 20
    • 80052763579 scopus 로고    scopus 로고
    • Novel multiplex single nucleotide polymorphism-based method for identifying epidemic clones of Listeria monocytogenes.
    • Lomonaco S., Knabel S.J., Dalmasso A., Civera T., Bottero M.T. Novel multiplex single nucleotide polymorphism-based method for identifying epidemic clones of Listeria monocytogenes. Appl. Environ. Microbiol. 2011, 77:6290-6294. http://dx.doi.org/10.1128/AEM.00429-11.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 6290-6294
    • Lomonaco, S.1    Knabel, S.J.2    Dalmasso, A.3    Civera, T.4    Bottero, M.T.5
  • 21
    • 84886642292 scopus 로고    scopus 로고
    • Bifidobacterium animalis ssp. lactis ATCC 27673 is a genomically unique strain within this conserved subspecies
    • Loquasto J.R., Barrangou R., Dudley E.G., Stahl B., Chen C., Roberts R.F. Bifidobacterium animalis ssp. lactis ATCC 27673 is a genomically unique strain within this conserved subspecies. Appl. Environ. Microbiol. 2013, 79:6903-6910. http://dx.doi.org/10.1128/AEM.01777-13.
    • (2013) Appl. Environ. Microbiol. , vol.79 , pp. 6903-6910
    • Loquasto, J.R.1    Barrangou, R.2    Dudley, E.G.3    Stahl, B.4    Chen, C.5    Roberts, R.F.6
  • 23
    • 4344573091 scopus 로고    scopus 로고
    • Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level: Reclassification of Bifidobacterium animalis as Bifidobacterium animalis ssp. animalis ssp. nov. and Bifidobacterium lactis as Bifidobacterium animalis ssp. lactis ssp. nov
    • Masco L., Ventura M., Zink R., Huys G., Swings J. Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level: Reclassification of Bifidobacterium animalis as Bifidobacterium animalis ssp. animalis ssp. nov. and Bifidobacterium lactis as Bifidobacterium animalis ssp. lactis ssp. nov. Int. J. Syst. Evol. Microbiol. 2004, 54:1137-1143.
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 1137-1143
    • Masco, L.1    Ventura, M.2    Zink, R.3    Huys, G.4    Swings, J.5
  • 24
    • 2342456985 scopus 로고    scopus 로고
    • +-ATPase activity in Bifidobacterium with special reference to acid tolerance
    • +-ATPase activity in Bifidobacterium with special reference to acid tolerance. Int. J. Food Microbiol. 2004, 93:109-113.
    • (2004) Int. J. Food Microbiol. , vol.93 , pp. 109-113
    • Matsumoto, M.1    Ohishi, H.2    Benno, Y.3
  • 25
    • 33845929857 scopus 로고    scopus 로고
    • Molecular discrimination of new isolates of Bifidobacterium animalis ssp. lactis from reference strains and commercial probiotic strains
    • Mayer H.K., Amtmann E., Philippi E., Steinegger G., Mayrhofer S., Kneifel W. Molecular discrimination of new isolates of Bifidobacterium animalis ssp. lactis from reference strains and commercial probiotic strains. Int. Dairy J. 2007, 17:565-573. http://dx.doi.org/10.1016/j.idairyj.2006.05.008.
    • (2007) Int. Dairy J. , vol.17 , pp. 565-573
    • Mayer, H.K.1    Amtmann, E.2    Philippi, E.3    Steinegger, G.4    Mayrhofer, S.5    Kneifel, W.6
  • 26
    • 0031056257 scopus 로고    scopus 로고
    • Bifidobacterium lactis sp. nov., a moderately oxygen tolerant species isolated from fermented milk
    • Meile L., Ludwig W., Reuger U., Gut C., Kaufmann P., Dasen G., Wenger S., Teuber M. Bifidobacterium lactis sp. nov., a moderately oxygen tolerant species isolated from fermented milk. Syst. Appl. Microbiol. 1997, 20:57-64. http://dx.doi.org/10.1016/S0723-2020(97)80048-3.
    • (1997) Syst. Appl. Microbiol. , vol.20 , pp. 57-64
    • Meile, L.1    Ludwig, W.2    Reuger, U.3    Gut, C.4    Kaufmann, P.5    Dasen, G.6    Wenger, S.7    Teuber, M.8
  • 28
    • 0034308019 scopus 로고    scopus 로고
    • Molecular differentiation of Bifidobacterium species with amplified ribosomal DNA restriction analysis and alignment of short regions of the ldh gene
    • Roy D., Sirois S. Molecular differentiation of Bifidobacterium species with amplified ribosomal DNA restriction analysis and alignment of short regions of the ldh gene. FEMS Microbiol. Lett. 2000, 191:17-24.
    • (2000) FEMS Microbiol. Lett. , vol.191 , pp. 17-24
    • Roy, D.1    Sirois, S.2
  • 29
    • 20444484956 scopus 로고    scopus 로고
    • Intrinsic tolerance of Bifidobacterium species to heat and oxygen and survival following spray drying and storage
    • Simpson P.J., Stanton C., Fitzgerald G.F., Ross R.P. Intrinsic tolerance of Bifidobacterium species to heat and oxygen and survival following spray drying and storage. J. Appl. Microbiol. 2005, 99:493-501.
    • (2005) J. Appl. Microbiol. , vol.99 , pp. 493-501
    • Simpson, P.J.1    Stanton, C.2    Fitzgerald, G.F.3    Ross, R.P.4
  • 30
    • 84866322497 scopus 로고    scopus 로고
    • Complete genome sequences of probiotic strains of Bifidobacterium animalis ssp. lactis B420 and Bi-07
    • Stahl B., Barrangou R. Complete genome sequences of probiotic strains of Bifidobacterium animalis ssp. lactis B420 and Bi-07. J. Bacteriol. 2012, 194:4131-4132. http://dx.doi.org/10.1128/JB.00766-12.
    • (2012) J. Bacteriol. , vol.194 , pp. 4131-4132
    • Stahl, B.1    Barrangou, R.2
  • 31
    • 77955287186 scopus 로고    scopus 로고
    • Complete genome sequence of probiotic Bifidobacterium animalis ssp. lactis strain V9
    • Sun Z., Chen X., Wang J., Gao P., Zhou Z., Ren Y., Sun T., Wang L., Meng H., Chen W., Zhang H. Complete genome sequence of probiotic Bifidobacterium animalis ssp. lactis strain V9. J. Bacteriol. 2010, 192:4080-4081. http://dx.doi.org/10.1128/JB.00369-10.
    • (2010) J. Bacteriol. , vol.192 , pp. 4080-4081
    • Sun, Z.1    Chen, X.2    Wang, J.3    Gao, P.4    Zhou, Z.5    Ren, Y.6    Sun, T.7    Wang, L.8    Meng, H.9    Chen, W.10    Zhang, H.11
  • 32
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 33
    • 77951539854 scopus 로고    scopus 로고
    • Revelation by single-nucleotide polymorphism genotyping that mutations leading to a premature stop codon in inlA are common among Listeria monocytogenes isolates from ready-to-eat foods but not human listeriosis cases
    • Van Stelten A., Simpson J.M., Ward T.J., Nightingale K.K. Revelation by single-nucleotide polymorphism genotyping that mutations leading to a premature stop codon in inlA are common among Listeria monocytogenes isolates from ready-to-eat foods but not human listeriosis cases. Appl. Environ. Microbiol. 2010, 76:2783-2790. http://dx.doi.org/10.1128/AEM.02651-09.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 2783-2790
    • Van Stelten, A.1    Simpson, J.M.2    Ward, T.J.3    Nightingale, K.K.4
  • 35
    • 0035374576 scopus 로고    scopus 로고
    • Specific identification and targeted characterization of Bifidobacterium lactis from different environmental isolates by a combined multiplex-PCR approach
    • Ventura M., Reniero R., Zink R. Specific identification and targeted characterization of Bifidobacterium lactis from different environmental isolates by a combined multiplex-PCR approach. Appl. Environ. Microbiol. 2001, 67:2760-2765.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2760-2765
    • Ventura, M.1    Reniero, R.2    Zink, R.3
  • 36
    • 0036952608 scopus 로고    scopus 로고
    • Rapid identification, differentiation, and proposed new taxonomic classification of Bifidobacterium lactis.
    • Ventura M., Zink R. Rapid identification, differentiation, and proposed new taxonomic classification of Bifidobacterium lactis. Appl. Environ. Microbiol. 2002, 68:6429-6434.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 6429-6434
    • Ventura, M.1    Zink, R.2
  • 37
    • 2142745366 scopus 로고    scopus 로고
    • Comparative sequence analysis of the tuf and recA genes and restriction fragment length polymorphism of the internal transcribed spacer region sequences supply additional tools for discriminating Bifidobacterium lactis from Bifidobacterium animalis.
    • Ventura M., Zink R. Comparative sequence analysis of the tuf and recA genes and restriction fragment length polymorphism of the internal transcribed spacer region sequences supply additional tools for discriminating Bifidobacterium lactis from Bifidobacterium animalis. Appl. Environ. Microbiol. 2003, 69:7517-7522.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7517-7522
    • Ventura, M.1    Zink, R.2
  • 38
    • 33645110151 scopus 로고    scopus 로고
    • Carbohydrate preference, acid tolerance and bile tolerance in five strains of Bifidobacterium.
    • Vernazza C.L., Gibson G.R., Rastall R.A. Carbohydrate preference, acid tolerance and bile tolerance in five strains of Bifidobacterium. J. Appl. Microbiol. 2006, 100:846-853.
    • (2006) J. Appl. Microbiol. , vol.100 , pp. 846-853
    • Vernazza, C.L.1    Gibson, G.R.2    Rastall, R.A.3
  • 39
    • 80051778433 scopus 로고    scopus 로고
    • Dose-response effect of Bifidobacterium lactis HN019 on whole gut transit time and functional gastrointestinal symptoms in adults
    • Waller P.A., Gopal P.K., Leyer G.J., Ouwehand A.C., Reifer C., Stewart M.E., Miller L.E. Dose-response effect of Bifidobacterium lactis HN019 on whole gut transit time and functional gastrointestinal symptoms in adults. Scand. J. Gastroenterol. 2011, 46:1057-1064. http://dx.doi.org/10.3109/00365521.2011.584895.
    • (2011) Scand. J. Gastroenterol. , vol.46 , pp. 1057-1064
    • Waller, P.A.1    Gopal, P.K.2    Leyer, G.J.3    Ouwehand, A.C.4    Reifer, C.5    Stewart, M.E.6    Miller, L.E.7
  • 40
    • 73949120217 scopus 로고    scopus 로고
    • Rapid method for identification of six common species of mycobacteria based on multiplex SNP analysis
    • Wang H., Yue J., Han M., Yang J., Zhao Y. Rapid method for identification of six common species of mycobacteria based on multiplex SNP analysis. J. Clin. Microbiol. 2010, 48:247-250. http://dx.doi.org/10.1128/JCM.01084-09.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 247-250
    • Wang, H.1    Yue, J.2    Han, M.3    Yang, J.4    Zhao, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.