Molecular discrimination of new isolates of Bifidobacterium animalis subsp. lactis from reference strains and commercial probiotic strains

International Dairy Journal

Volumn 17, Issue 5, 2007, Pages 565-573

  Mayer, Helmut K ^a   Amtmann, Ernst ^a   Philippi, Elisabeth ^a   Steinegger, Gudrun ^a   Mayrhofer, Sigrid ^a   Kneifel, Wolfgang ^a  

^a UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

Author keywords

Bifidobacterium animalis subsp. lactis; Identification; PCR; PFGE; Probiotics; RAPD PCR

Indexed keywords

DAIRY PRODUCTS; DNA; ELECTROPHORESIS; FOOD PRODUCTS PLANTS; MOLECULAR BIOLOGY;

BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS; POLYMERASE CHAIN REACTION (PCR); PROBIOTIC STRAINS; PULSED-FIELD GEL ELECTROPHORESIS (PFGE); RANDOMLY AMPLIFIED POLYMORPHIC DNA (RAPD);

BACTERIA;

BIFIDOBACTERIUM; BIFIDOBACTERIUM ANIMALIS; BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS; SUS SCROFA;

EID: 33845929857     PISSN: 09586946     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.idairyj.2006.05.008     Document Type: Article

References (49)

1. Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidmann J.G., Smith J.A., et al. Current protocols in molecular biology (1990), Greene Publishing Associates and Wiley-Interscience, New York, NY, USA pp. 2.4.1-2.4.5
2. Bonaparte C., and Reuter G. Bifidobacteria in commercial dairy products: which species are used?. Microbiology and Immunology 26 (1996) 181-197
3. Cai Y., Matsumoto M., and Benno Y. Bifidobacterium lactis Meile et al. 1997 is a subjective synonym of Bifidobacterium animalis (Mitsuoka 1969) Scardovi and Trovatelli 1974. Microbiology and Immunology 44 (2000) 815-820
4. Delcenserie V., Bechoux N., China B., Daube G., and Gavini F. A PCR method for detection of bifidobacteria in raw milk and raw milk cheese: Comparison with culture-based methods. Journal of Microbiological Methods 61 (2005) 55-67
5. Dong X., Cheng G., and Jian W. Simultaneous identification of five Bifidobacterium species isolated from human beings using multiple PCR primers. Systematic and Applied Microbiology 23 (2000) 386-390
6. Engel G., Rösch N., and Heller K.J. Typisierung von Bifidobakterien aus fermentierten Milchprodukten mit der Pulsfeld-Gel-Elektrophorese (PFGE). Kieler Milchwirtschaftliche Forschungsberichte 55 (2003) 225-232
7. Farber J.M. An introduction to the hows and whys of molecular typing. Journal of Food Protection 59 (1996) 1091-1101
8. Fooks L., Fuller R., and Gibson G. Prebiotics, probiotics and human gut microbiology. International Dairy Journal 9 (1999) 53-61
9. Gomes A.M.P., and Malcata F.X. Bifidobacterium spp and Lactobacillus acidophilus: Biological, biochemical, technological and therapeutical properties relevant for use as probiotics. Trends in Food Science & Technology 10 (1999) 139-157
10. Grand M., Küffer M., and Baumgartner A. Quantitative analysis and molecular identification of bifidobacteria strains in probiotic milk products. European Food Research and Technology 217 (2003) 90-92
11. Holzapfel W.H., Haberer P., Snel J., Schillinger U., and Huis int Veld J.H.J. Overview of gut flora and probiotics. International Journal of Food Microbiology 41 (1998) 85-101
12. Holzapfel W.H., Schillinger U., Du Toit M., and Dicks L. Systematics of probiotic lactic acid bacteria with reference to modern phenotypic and genomic methods. Microecology and Therapy 26 (1997) 1-10
13. Hung L., and Bandziulis R. Megabase DNA analysis: chromosomal DNA preparation, restriction, and pulsed-field electrophoresis. Promega Notes 24 (1990) 1-3
14. International Committee on Systematic Bacteriology (2001). Subcommittee on the taxonomy of Bifidobacterium, Lactobacillus and related organisms. Minutes of the meetings, 22 and 23 September 1999, Veldhoven, The Netherlands. International Journal of Systematic and Evolutionary Microbiology, 51, 259-261.
15. Kaufmann P., Pfefferkorn A., Teuber M., and Meile L. Identification and quantification of Bifidobacterium species isolated from food with genus-specific 16S rRNA-targeted probes by colony hybridization and PCR. Applied and Environmental Microbiology 63 (1997) 1268-1273
16. Kim W., Khunajakr N., Ren J., and Dunn N.W. Conservation of the major cold shock protein in lactic acid bacteria. Current Microbiology 37 (1998) 333-336
17. Kimura K., McCartney A.L., McConnell M.A., and Tannock G.W. Analysis of faecal populations of bifidobacteria and lactobacilli and investigation of the immunological response of their human hosts to the predominant strains. Applied and Environmental Microbiology 63 (1997) 3394-3398
18. Kneifel W., and Bonaparte C. Novel trends related to health-relevant foods: 1. Probiotics. Ernährung/Nutrition 22 (1998) 357-363
19. Kok R.G., Waal A.D., Schut F., Welling G.W., Weenk G., and Hellingwerf K.J. Species detection and analysis of a probiotic Bifidobacterium strain in infant fecal samples. Applied and Environmental Microbiology 62 (1996) 3668-3672
20. Kullen M.J., Brady L.J., and O'Sullivan D.J. Evaluation of using a short region of the recA gene for rapid and sensitive speciation of dominant bifidobacteria in the human large intestine. FEMS Microbiology Letters 154 (1997) 377-383
21. Langendijk P.S., Schut F., Jansen G.J., Raangs G.C., Kamphuis G.R., Wilkinson M.H.F., et al. Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples. Applied and Environmental Microbiology 61 (1995) 3069-3075
22. Masco L., Ventura M., Zink R., Huys G., and Swings J. Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level reclassification of Bifidobacterium animalis as Bifidobacterium animalis subsp. animalis subsp. nov. and Bifidobacterium lactis as Bifidobacterium animalis subsp. lactis subsp. nov. International Journal of Systematic and Evolutionary Microbiology 54 (2004) 113-143
23. Matsuki T., Watanabe K., Tanaka R., and Oyaizu H. Rapid identification of human intestinal bifidobacteria by 16S rRNA-targeted species- and group-specific primers. FEMS Microbiology Letters 167 (1998) 113-121
24. Mättö J., Malinen E., Suihko M.-L., Alander M., Palva A., and Saarela M. Genetic heterogeneity and functional properties of intestinal bifidobacteria. Journal of Applied Microbiology 97 (2004) 459-470
25. Mayer, H. K., Bonaparte, C., Newart, M., & Kneifel, W. (2003). Authentication of probiotic bifidobacteria using protein and DNA fingerprinting techniques. Bulletin Special Issue-IDF Seminar on Fermented Milk, S.I. 0301 (pp. 62-84). Brussels, Belgium: International Dairy Federation.
26. Mayer, H. K., Philippi, E., Steinegger, G., & Amtmann, E. (2005). Molecular identification and characterisation of new Bifidobacterium animalis subsp. lactis strains isolated from pig faeces. In fourth NIZO Dairy Conference on Prospects for health, well-being and safety, P14, Papendal, The Netherlands, 15-17 June, 2005. Oxford, UK: Elsevier.
27. McCartney A.L., Wenzhi W., and Tannock G.W. Molecular analysis of the composition of the bifidobacteria and lactobacillus microflora of humans. Applied and Environmental Microbiology 62 (1996) 4608-4613
28. Meile L., Ludwig W., Rueger U., Gut C., Kaufmann P., Dasen G., et al. Bifidobacterium lactis sp. nov., a moderately oxygen tolerant species isolated from fermented milk. Systematic and Applied Microbiology 20 (1997) 57-64
29. Mullié C., Odou M.-F., Singer E., Romond M.-B., and Izard D. Multiplex PCR using 16S rRNA gene-targeted primers for the identification of bifidobacteria from human origin. FEMS Microbiology Letters 222 (2003) 129-136
30. Prasad J., Gill H., Smart J., and Gopal P.K. Selection and characterisation of Lactobacillus and Bifidobacterium strains for use as probiotics. International Dairy Journal 8 (1998) 993-1002
31. Rial D.R. The role of probiotic cultures in the control of gastrointestinal health. Journal of Nutrition Science 130 (2000) 396-402
32. Roy D., and Sirois S. Molecular differentiation of Bifidobacterium species with amplified ribosomal DNA restriction analysis and alignment of short regions of the ldh gene. FEMS Microbiology Letters 191 (2000) 17-24
33. Roy D., Ward P., and Champagne C. Differentiation of bifidobacteria by use of pulsed-field gel electrophoresis and polymerase chain reaction. International Journal of Food Microbiology 29 (1996) 11-29
34. Sanders M.E., Walker D.C., Walker K.M., Aoyama K., and Klaenhammer T.R. Performance of commercial cultures in fluid milk applications. Journal of Dairy Science 79 (1996) 943-955
35. Satokari R.M., Vaughan E.E., Akkermans A.D., Saarela M., and deVos W.M. Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 67 (2001) 504-513
36. Scardovi V. Genus Bifidobacterium Orla-Jensen. 1924, 472. In: Krieg N.R., and Holt J.G. (Eds). Bergey's manual of systematic bacteriology Vol. 1 (1984), Williams and Wilkins, Baltimore, MD, USA 1418-1434
37. Scardovi V., and Trovatelli L.D. Bifidobacterium animalis (Mitsuoka) comb. nov. and the "minimum" and "subtile" groups of new bifidobacteria found in sewage. International Journal of Systematic Bacteriology 24 (1974) 21-28
38. Stanton C., Gardiner G., Meehan H., Collins K., Fitzgerald G.F., Lynch P.B., et al. Market potential for probiotics. American Journal of Clinical Nutrition 73 (2001) 476-483
39. Steinegger, G. (2005). Biochemische und molekularbiologische Charakterisierung von probiotischen Bifidobakterien-Stämmen. Diplomarbeit, Universität für Bodenkultur, Wien, Germany.
40. ®B94 in human faecal samples from a consumption trial. FEMS Microbiology Letters 244 (2005) 99-103
41. Temmerman R., Masco L., Vanhoutte T., Huys G., and Swings J. Development and validation of a nested-PCR-denaturing gradient gel electrophoresis method for taxonomic characterization of bifidobacterial communities. Applied and Environmental Microbiology 69 (2003) 6380-6385
42. Ventura M., Canchaya C., van Sinderen D., Fitzgerald G.F., and Zink R. Bifidobacterium lactis DSM 10140: Identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny. Applied and Environmental Microbiology 70 (2004) 3110-3121
43. Ventura M., Elli M., Reniero R., and Zink R. Molecular microbial analysis of Bifidobacterium isolates from different environments by the species-specific amplified ribosomal DNA restriction analysis (ARDRA). FEMS Microbiology Ecology 36 (2001) 113-121
44. Ventura M., Reniero R., and Zink R. Specific identification and targeted characterization of Bifidobacterium lactis from different environmental isolates by a combined multiplex-PCR approach. Applied and Environmental Microbiology 67 (2001) 2760-2765
45. Ventura M., Van Sinderen D., Fitzgerald G.F., and Zink R. Insights into the taxonomy, genetics and physiology of bifidobacteria. Antonie van Leeuwenhoek 86 (2004) 205-223
46. Ventura M., and Zink R. Rapid identification, differentiation, and proposed new taxonomic classification of Bifidobacterium lactis. Applied and Environmental Microbiology 68 (2002) 6429-6434
47. Ventura M., and Zink R. Comparative sequence analysis of the tuf and recA genes and restriction fragment length polymorphism of the internal transcribed spacer region sequences supply additional tools for discriminating Bifidobacterium lactis from Bifidobacterium animalis. Applied and Environmental Microbiology 69 (2003) 7517-7522
48. Vincent D., Roy D., Mondou F., and Déry C. Characterization of bifidobacteria by random DNA amplification. International Journal of Food Microbiology 43 (1998) 185-193
49. Yamamoto T., Morotomi M., and Tanaka R. Species-specific oligonucleotide probes for five Bifidobacterium species detected in human intestinal microflora. Applied and Environmental Microbiology 58 (1992) 4076-4079