A novel bio-orthogonal cross-linker for improved protein/protein interaction analysis

Analytical Chemistry

Volumn 87, Issue 3, 2015, Pages 1853-1860

  Nury, Catherine ^a   Redeker, Virginie ^b   Dautrey, Sébastien ^c   Romieu, Anthony ^d,e   Van Der Rest, Guillaume ^f   Renard, Pierre Yves ^c   Melki, Ronald ^b   Chamot Rooke, Julia ^a  

^a CNRS   (France)

^b CNRS   (France)

^c NORMANDIE UNIVERSITÉ   (France)

^d UNIVERSITÉ DE BOURGOGNE   (France)

^e INSTITUT UNIVERSITAIRE DE FRANCE   (France)

^f UNIVERSITÉ PARIS SUD   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATOGRAPHY; ESTERIFICATION; ESTERS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PEPTIDES;

CROSS-LINKED PROTEINS; ENZYMATIC DIGESTIONS; INTERACTION ANALYSIS; ISOTOPICALLY LABELED; MOLECULAR CHAPERONES; PARKINSON'S DISEASE; PROTEIN CROSS-LINKER; PROTEIN-PROTEIN INTERFACE;

PROTEINS;

ALPHA SYNUCLEIN; AZIDE; CARBAMIC ACID DERIVATIVE; CROSS LINKING REAGENT; HEAT SHOCK COGNATE PROTEIN 70;

AMINO ACID SEQUENCE; CHEMICAL STRUCTURE; CHEMISTRY; HUMAN; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLISM; MOLECULAR GENETICS; PARKINSON DISEASE; PROCEDURES; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION;

ALPHA-SYNUCLEIN; AMINO ACID SEQUENCE; AZIDES; CARBAMATES; CHROMATOGRAPHY, LIQUID; CROSS-LINKING REAGENTS; HSC70 HEAT-SHOCK PROTEINS; HUMANS; MASS SPECTROMETRY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PARKINSON DISEASE; PROTEIN INTERACTION MAPPING; PROTEIN INTERACTION MAPS;

EID: 84922226379     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac503892c     Document Type: Article

References (44)

1. Petrotchenko, E. V.; Borchers, C. H. Mass Spectrom. Rev. 2010, 29, 862-876
2. Paramelle, D.; Miralles, G.; Subra, G.; Martinez, J. Proteomics 2013, 13, 438-456
3. Sohn, C. H.; Agnew, H. D.; Lee, J. E.; Sweredoski, M. J.; Graham, R. L.; Smith, G. T.; Hess, S.; Czerwieniec, G.; Loo, J. A.; Heath, J. R.; Deshaies, R. J.; Beauchamp, J. L. Anal. Chem. 2012, 84, 2662-2669
4. Fujii, N.; Jacobsen, R. B.; Wood, N. L.; Schoeniger, J. S.; Guy, R. K. Bioorg. Med. Chem. Lett. 2004, 14, 427-429
5. Chu, F.; Mahrus, S.; Craik, C. S.; Burlingame, A. L. J. Am. Chem. Soc. 2006, 128, 10362-10363
6. Sinz, A.; Kalkhof, S.; Ihling, C. J. Am. Soc. Mass Spectrom. 2005, 16, 1921-1931
7. Tang, X.; Bruce, J. E. Mol. BioSyst. 2010, 6, 939-947
8. Schilling, B.; Row, R. H.; Gibson, B. W.; Guo, X.; Young, M. M. J. Am. Soc. Mass Spectrom. 2003, 14, 834-850
9. Muller, D. R.; Schindler, P.; Towbin, H.; Wirth, U.; Voshol, H.; Hoving, S.; Steinmetz, M. O. Anal. Chem. 2001, 73, 1927-1934
10. Ihling, C.; Schmidt, A.; Kalkhof, S.; Schulz, D. M.; Stingl, C.; Mechtler, K.; Haack, M.; Beck-Sickinger, A. G.; Cooper, D. M.; Sinz, A. J. Am. Soc. Mass Spectrom. 2006, 17, 1100-1113
11. Leitner, A.; Reischl, R.; Walzthoeni, T.; Herzog, F.; Bohn, S.; Forster, F.; Aebersold, R. Mol. Cell. Proteomics 2012, 11, M111.014126
12. Fritzsche, R.; Ihling, C. H.; Goetze, M.; Sinz, A. Rapid Commun. Mass Spectrom. 2012, 26, 653-658
13. Leitner, A.; Walzthoeni, T.; Aebersold, R. Nat. Protocols 2014, 9, 120-137
14. Rinner, O.; Seebacher, J.; Walzthoeni, T.; Mueller, L.; Beck, M.; Schmidt, A.; Mueller, M.; Aebersold, R. Nat. Methods 2008, 5, 315-318
15. Gotze, M.; Pettelkau, J.; Schaks, S.; Bosse, K.; Ihling, C. H.; Krauth, F.; Fritzsche, R.; Kuhn, U.; Sinz, A. J. Am. Soc. Mass Spectrom. 2012, 23, 76-87
16. Yang, B.; Wu, Y.-J.; Zhu, M.; Fan, S.-B.; Lin, J.; Zhang, K.; Li, S.; Chi, H.; Li, Y.-X.; Chen, H.-F.; Luo, S.-K.; Ding, Y.-H.; Wang, L.-H.; Hao, Z.; Xiu, L.-Y.; Chen, S.; Ye, K.; He, S.-M.; Dong, M.-Q. Nat. Methods 2012, 9, 904-906
17. Rasmussen, M. I.; Refsgaard, J. C.; Peng, L.; Houen, G.; Hojrup, P. J. Proteomics 2011, 74, 1871-1883
18. Zheng, C.; Weisbrod, C. R.; Chavez, J. D.; Eng, J. K.; Sharma, V.; Wu, X.; Bruce, J. E. J Proteome Res. 2013, 12, 1989-1995
19. Chen, Z. A.; Jawhari, A.; Fischer, L.; Buchen, C.; Tahir, S.; Kamenski, T.; Rasmussen, M.; Lariviere, L.; Bukowski-Wills, J. C.; Nilges, M.; Cramer, P.; Rappsilber, J. EMBO J. 2010, 29, 717-726
20. Walzthoeni, T.; Claassen, M.; Leitner, A.; Herzog, F.; Bohn, S.; Forster, F.; Beck, M.; Aebersold, R. Nat. Methods 2012, 9, 901-903
21. Kao, A.; Randall, A.; Yang, Y.; Patel, V. R.; Kandur, W.; Guan, S.; Rychnovsky, S. D.; Baldi, P.; Huang, L. Mol. Cell. Proteomics 2012, 11, 1566-1577
22. Karadzic, I.; Maupin-Furlow, J.; Humbard, M.; Prunetti, L.; Singh, P.; Goodlett, D. R. Proteomics 2012, 12, 1806-1814
23. Herzog, F.; Kahraman, A.; Boehringer, D.; Mak, R.; Bracher, A.; Walzthoeni, T.; Leitner, A.; Beck, M.; Hartl, F. U.; Ban, N.; Malmstrom, L.; Aebersold, R. Science 2012, 337, 1348-1352
24. Greber, B. J.; Boehringer, D.; Leitner, A.; Bieri, P.; Voigts-Hoffmann, F.; Erzberger, J. P.; Leibundgut, M.; Aebersold, R.; Ban, N. Nature 2014, 505, 515-519
25. Redeker, V.; Pemberton, S.; Bienvenut, W.; Bousset, L.; Melki, R. J. Biol. Chem. 2012, 287, 32630-32639
26. Pemberton, S.; Madiona, K.; Pieri, L.; Kabani, M.; Bousset, L.; Melki, R. J. Biol. Chem. 2011, 286, 34690-34699
27. Melki, R.; Carlier, M. F.; Pantaloni, D. Biochemistry 1990, 29, 8921-8932
28. Chambers, M. C.; Maclean, B.; Burke, R.; Amodei, D.; Ruderman, D. L.; Neumann, S.; Gatto, L.; Fischer, B.; Pratt, B.; Egertson, J.; Hoff, K.; Kessner, D.; Tasman, N.; Shulman, N.; Frewen, B.; Baker, T. A.; Brusniak, M.-Y.; Paulse, C.; Creasy, D.; Flashner, L.; Kani, K.; Moulding, C.; Seymour, S. L.; Nuwaysir, L. M.; Lefebvre, B.; Kuhlmann, F.; Roark, J.; Rainer, P.; Detlev, S.; Hemenway, T.; Huhmer, A.; Langridge, J.; Connolly, B.; Chadick, T.; Holly, K.; Eckels, J.; Deutsch, E. W.; Moritz, R. L.; Katz, J. E.; Agus, D. B.; MacCoss, M.; Tabb, D. L.; Mallick, P. Nat. Biotechnol. 2012, 30, 918-920
29. Clavé, G.; Volland, H.; Flaender, M.; Gasparutto, D.; Romieu, A.; Renard, P.-Y. Org. Biomol. Chem. 2010, 8, 4329-4345
30. Beal, D. M.; Jones, L. H. Angew. Chem., Int. Ed. 2012, 51, 6320-6326
31. Chowdhury, S. M.; Du, X.; Tolic, N.; Wu, S.; Moore, R. J.; Mayer, M. U.; Smith, R. D.; Adkins, J. N. Anal. Chem. 2009, 81, 5524-5532
32. Morpurgo, M.; Bayer, E. A.; Wilchek, M. J. Biochem. Biophys. Methods 1999, 38, 17-28
33. Clavé, G.; Boutal, H.; Hoang, A.; Perraut, F.; Volland, H.; Renard, P.-Y.; Romieu, A. Org. Biomol. Chem. 2008, 6, 3065-3078
34. Mhidia, R.; Vallin, A.; Ollivier, N.; Blanpain, A.; Shi, G.; Christiano, R.; Johannes, L.; Melnyk, O. Bioconjugate Chem. 2010, 21, 219-228
35. Christine, C.; Koubemba, M.; Shakir, S.; Clavier, S.; Ehret-Sabatier, L.; Saupe, F.; Orend, G.; Charbonniere, L. J. Org. Biomol. Chem. 2012, 10, 9183-9190
36. Kalkhof, S.; Sinz, A. Anal. Bioanal. Chem. 2008, 392, 305-312
37. Maedler, S.; Bich, C.; Touboul, D.; Zenobi, R. J. Mass Spectrom. 2009, 44, 694-706
38. Kolb, H. C.; Finn, M. G.; Sharpless, K. B. Angew. Chem., Int. Ed. 2001, 40, 2004-2021
39. Tornoe, C. W.; Christensen, C.; Meldal, M. J. Org. Chem. 2002, 67, 3057-3064
40. Mohana Rao, J. K.; Bujacz, G.; Wlodawer, A. FEBS Lett. 1998, 439, 133-137
41. Rozanova, N. A.; Chetverikova, E. P. Biokhimiia (Moscow, Russia) 1981, 46, 2125-2135
42. Goedert, M. Nat. Rev. Neurosci. 2001, 2, 492-501
43. Spillantini, M. G.; Schmidt, M. L.; Lee, V. M. Y.; Trojanowski, J. Q.; Jakes, R.; Goedert, M. Nature 1997, 388, 839-840
44. Pemberton, S.; Melki, R. Commun. Integr. Biol. 2012, 5, 94-95