-
1
-
-
34547131554
-
Analysis of protein complexes using mass spectrometry
-
Gingras, A. C.; Gstaiger, M.; Raught, B.; Aebersold, R. Analysis of protein complexes using mass spectrometry Nat. Rev. Mol. Cell Biol. 2007, 8 (8) 645-54
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, Issue.8
, pp. 645-654
-
-
Gingras, A.C.1
Gstaiger, M.2
Raught, B.3
Aebersold, R.4
-
2
-
-
0035326345
-
Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis
-
Muller, D. R.; Schindler, P.; Towbin, H.; Wirth, U.; Voshol, H.; Hoving, S.; Steinmetz, M. O. Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis Anal. Chem. 2001, 73 (9) 1927-34
-
(2001)
Anal. Chem.
, vol.73
, Issue.9
, pp. 1927-1934
-
-
Muller, D.R.1
Schindler, P.2
Towbin, H.3
Wirth, U.4
Voshol, H.5
Hoving, S.6
Steinmetz, M.O.7
-
3
-
-
0034650492
-
A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry
-
Rappsilber, J.; Siniossoglou, S.; Hurt, E. C.; Mann, M. A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry Anal. Chem. 2000, 72 (2) 267-75
-
(2000)
Anal. Chem.
, vol.72
, Issue.2
, pp. 267-275
-
-
Rappsilber, J.1
Siniossoglou, S.2
Hurt, E.C.3
Mann, M.4
-
4
-
-
3242772209
-
Probing three-dimensional structure of bovine serum albumin by chemical cross-linking and mass spectrometry
-
Huang, B. X.; Kim, H. Y.; Dass, C. Probing three-dimensional structure of bovine serum albumin by chemical cross-linking and mass spectrometry J. Am. Soc. Mass Spectrom. 2004, 15 (8) 1237-47
-
(2004)
J. Am. Soc. Mass Spectrom.
, vol.15
, Issue.8
, pp. 1237-1247
-
-
Huang, B.X.1
Kim, H.Y.2
Dass, C.3
-
5
-
-
0042349690
-
Chemical cross-linking and mass spectrometry for protein structural modeling
-
Back, J. W.; de Jong, L.; Muijsers, A. O.; de Koster, C. G. Chemical cross-linking and mass spectrometry for protein structural modeling J. Mol. Biol. 2003, 331 (2) 303-13
-
(2003)
J. Mol. Biol.
, vol.331
, Issue.2
, pp. 303-313
-
-
Back, J.W.1
De Jong, L.2
Muijsers, A.O.3
De Koster, C.G.4
-
6
-
-
0034705128
-
High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry
-
Young, M. M.; Tang, N.; Hempel, J. C.; Oshiro, C. M.; Taylor, E. W.; Kuntz, I. D.; Gibson, B. W.; Dollinger, G. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry Proc. Natl. Acad. Sci. U. S. A. 2000, 97 (11) 5802-6
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, Issue.11
, pp. 5802-5806
-
-
Young, M.M.1
Tang, N.2
Hempel, J.C.3
Oshiro, C.M.4
Taylor, E.W.5
Kuntz, I.D.6
Gibson, B.W.7
Dollinger, G.8
-
7
-
-
0035687759
-
Algorithms for identifying protein cross-links via tandem mass spectrometry
-
Chen, T.; Jaffe, J. D.; Church, G. M. Algorithms for identifying protein cross-links via tandem mass spectrometry J. Comput. Biol. 2001, 8 (6) 571-83
-
(2001)
J. Comput. Biol.
, vol.8
, Issue.6
, pp. 571-583
-
-
Chen, T.1
Jaffe, J.D.2
Church, G.M.3
-
8
-
-
33747618271
-
Isotope-coded and affinity-tagged cross-linking (ICATXL): An efficient strategy to probe protein interaction surfaces
-
Chu, F.; Mahrus, S.; Craik, C. S.; Burlingame, A. L. Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces J. Am. Chem. Soc. 2006, 128 (32) 10362-3
-
(2006)
J. Am. Chem. Soc.
, vol.128
, Issue.32
, pp. 10362-10363
-
-
Chu, F.1
Mahrus, S.2
Craik, C.S.3
Burlingame, A.L.4
-
9
-
-
77955856359
-
Chemical cross-linking with a diazirine photoactivatable cross-linker investigated by MALDI- and ESI-MS/MS
-
Gomes, A. F.; Gozzo, F. C. Chemical cross-linking with a diazirine photoactivatable cross-linker investigated by MALDI- and ESI-MS/MS J. Mass Spectrom. 2010, 45 (8) 892-9
-
(2010)
J. Mass Spectrom.
, vol.45
, Issue.8
, pp. 892-899
-
-
Gomes, A.F.1
Gozzo, F.C.2
-
10
-
-
12244285932
-
Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: Application to a calmodulin/target peptide complex
-
Kalkhof, S.; Ihling, C.; Mechtler, K.; Sinz, A. Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: application to a calmodulin/target peptide complex Anal. Chem. 2005, 77 (2) 495-503
-
(2005)
Anal. Chem.
, vol.77
, Issue.2
, pp. 495-503
-
-
Kalkhof, S.1
Ihling, C.2
Mechtler, K.3
Sinz, A.4
-
11
-
-
78650112481
-
A universal matrix-assisted laser desorption/ionization cleavable cross-linker for protein structure analysis
-
Muller, M. Q.; Zeiser, J. J.; Dreiocker, F.; Pich, A.; Schafer, M.; Sinz, A. A universal matrix-assisted laser desorption/ionization cleavable cross-linker for protein structure analysis Rapid Commun. Mass Spectrom. 2011, 25 (1) 155-61
-
(2011)
Rapid Commun. Mass Spectrom.
, vol.25
, Issue.1
, pp. 155-161
-
-
Muller, M.Q.1
Zeiser, J.J.2
Dreiocker, F.3
Pich, A.4
Schafer, M.5
Sinz, A.6
-
12
-
-
61649117943
-
BiPS, a photocleavable, isotopically coded, fluorescent cross-linker for structural proteomics
-
Petrotchenko, E. V.; Xiao, K.; Cable, J.; Chen, Y.; Dokholyan, N. V.; Borchers, C. H. BiPS, a photocleavable, isotopically coded, fluorescent cross-linker for structural proteomics Mol. Cell. Proteomics 2009, 8 (2) 273-86
-
(2009)
Mol. Cell. Proteomics
, vol.8
, Issue.2
, pp. 273-286
-
-
Petrotchenko, E.V.1
Xiao, K.2
Cable, J.3
Chen, Y.4
Dokholyan, N.V.5
Borchers, C.H.6
-
13
-
-
41449110185
-
Identification of cross-linked peptides from large sequence databases
-
Rinner, O.; Seebacher, J.; Walzthoeni, T.; Mueller, L. N.; Beck, M.; Schmidt, A.; Mueller, M.; Aebersold, R. Identification of cross-linked peptides from large sequence databases Nat. Methods 2008, 5 (4) 315-8
-
(2008)
Nat. Methods
, vol.5
, Issue.4
, pp. 315-318
-
-
Rinner, O.1
Seebacher, J.2
Walzthoeni, T.3
Mueller, L.N.4
Beck, M.5
Schmidt, A.6
Mueller, M.7
Aebersold, R.8
-
14
-
-
14344258702
-
A three-dimensional molecular model of lipid-free apolipoprotein A-I determined by cross-linking/mass spectrometry and sequence threading
-
Silva, R. A.; Hilliard, G. M.; Fang, J.; Macha, S.; Davidson, W. S. A three-dimensional molecular model of lipid-free apolipoprotein A-I determined by cross-linking/mass spectrometry and sequence threading Biochemistry 2005, 44 (8) 2759-69
-
(2005)
Biochemistry
, vol.44
, Issue.8
, pp. 2759-2769
-
-
Silva, R.A.1
Hilliard, G.M.2
Fang, J.3
MacHa, S.4
Davidson, W.S.5
-
15
-
-
3042799329
-
Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometry
-
Sinz, A.; Wang, K. Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometry Anal. Biochem. 2004, 331 (1) 27-32
-
(2004)
Anal. Biochem.
, vol.331
, Issue.1
, pp. 27-32
-
-
Sinz, A.1
Wang, K.2
-
16
-
-
11844289583
-
Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactions
-
Tang, X.; Munske, G. R.; Siems, W. F.; Bruce, J. E. Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactions Anal. Chem. 2005, 77 (1) 311-8
-
(2005)
Anal. Chem.
, vol.77
, Issue.1
, pp. 311-318
-
-
Tang, X.1
Munske, G.R.2
Siems, W.F.3
Bruce, J.E.4
-
17
-
-
0030298208
-
Mapping cross-linking sites in modified proteins with mass spectrometry: An application to cross-linked hemoglobins
-
Yang, T.; Horejsh, D. R.; Mahan, K. J.; Zaluzec, E. J.; Watson, T. J.; Gage, D. A. Mapping cross-linking sites in modified proteins with mass spectrometry: an application to cross-linked hemoglobins Anal. Biochem. 1996, 242 (1) 55-63
-
(1996)
Anal. Biochem.
, vol.242
, Issue.1
, pp. 55-63
-
-
Yang, T.1
Horejsh, D.R.2
Mahan, K.J.3
Zaluzec, E.J.4
Watson, T.J.5
Gage, D.A.6
-
18
-
-
77149146167
-
Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry
-
Chen, Z. A.; Jawhari, A.; Fischer, L.; Buchen, C.; Tahir, S.; Kamenski, T.; Rasmussen, M.; Lariviere, L.; Bukowski-Wills, J. C.; Nilges, M.; Cramer, P.; Rappsilber, J. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry EMBO J. 2010, 29 (4) 717-26
-
(2010)
EMBO J.
, vol.29
, Issue.4
, pp. 717-726
-
-
Chen, Z.A.1
Jawhari, A.2
Fischer, L.3
Buchen, C.4
Tahir, S.5
Kamenski, T.6
Rasmussen, M.7
Lariviere, L.8
Bukowski-Wills, J.C.9
Nilges, M.10
Cramer, P.11
Rappsilber, J.12
-
19
-
-
84866095385
-
Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry
-
Herzog, F.; Kahraman, A.; Boehringer, D.; Mak, R.; Bracher, A.; Walzthoeni, T.; Leitner, A.; Beck, M.; Hartl, F. U.; Ban, N.; Malmstrom, L.; Aebersold, R. Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry Science 2012, 337 (6100) 1348-52
-
(2012)
Science
, vol.337
, Issue.6100
, pp. 1348-1352
-
-
Herzog, F.1
Kahraman, A.2
Boehringer, D.3
Mak, R.4
Bracher, A.5
Walzthoeni, T.6
Leitner, A.7
Beck, M.8
Hartl, F.U.9
Ban, N.10
Malmstrom, L.11
Aebersold, R.12
-
20
-
-
38349037648
-
Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching
-
Maiolica, A.; Cittaro, D.; Borsotti, D.; Sennels, L.; Ciferri, C.; Tarricone, C.; Musacchio, A.; Rappsilber, J. Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching Mol. Cell. Proteomics 2007, 6 (12) 2200-11
-
(2007)
Mol. Cell. Proteomics
, vol.6
, Issue.12
, pp. 2200-2211
-
-
Maiolica, A.1
Cittaro, D.2
Borsotti, D.3
Sennels, L.4
Ciferri, C.5
Tarricone, C.6
Musacchio, A.7
Rappsilber, J.8
-
21
-
-
84862854295
-
Chemical cross-linking, mass spectrometry, and in silico modeling of proteasomal 20S core particles of the haloarchaeon Haloferax volcanii
-
Karadzic, I.; Maupin-Furlow, J.; Humbard, M.; Prunetti, L.; Singh, P.; Goodlett, D. R. Chemical cross-linking, mass spectrometry, and in silico modeling of proteasomal 20S core particles of the haloarchaeon Haloferax volcanii Proteomics 2012, 12 (11) 1806-14
-
(2012)
Proteomics
, vol.12
, Issue.11
, pp. 1806-1814
-
-
Karadzic, I.1
Maupin-Furlow, J.2
Humbard, M.3
Prunetti, L.4
Singh, P.5
Goodlett, D.R.6
-
22
-
-
80054023027
-
Cross-linking measurements of in vivo protein complex topologies
-
006841
-
Zheng, C.; Yang, L.; Hoopmann, M. R.; Eng, J. K.; Tang, X.; Weisbrod, C. R.; Bruce, J. E. Cross-linking measurements of in vivo protein complex topologies Mol Cell Proteomics 2011, 10 (10) M110 006841
-
(2011)
Mol Cell Proteomics
, vol.10
, Issue.10
, pp. 110
-
-
Zheng, C.1
Yang, L.2
Hoopmann, M.R.3
Eng, J.K.4
Tang, X.5
Weisbrod, C.R.6
Bruce, J.E.7
-
23
-
-
84866118432
-
False discovery rate estimation for cross-linked peptides identified by mass spectrometry
-
Walzthoeni, T.; Claassen, M.; Leitner, A.; Herzog, F.; Bohn, S.; Forster, F.; Beck, M.; Aebersold, R. False discovery rate estimation for cross-linked peptides identified by mass spectrometry Nat. Methods 2012, 901-3
-
(2012)
Nat. Methods
, pp. 901-903
-
-
Walzthoeni, T.1
Claassen, M.2
Leitner, A.3
Herzog, F.4
Bohn, S.5
Forster, F.6
Beck, M.7
Aebersold, R.8
-
24
-
-
84866117936
-
Identification of cross-linked peptides from complex samples
-
Yang, B.; Wu, Y. J.; Zhu, M.; Fan, S. B.; Lin, J.; Zhang, K.; Li, S.; Chi, H.; Li, Y. X.; Chen, H. F.; Luo, S. K.; Ding, Y. H.; Wang, L. H.; Hao, Z.; Xiu, L. Y.; Chen, S.; Ye, K.; He, S. M.; Dong, M. Q. Identification of cross-linked peptides from complex samples Nat. Methods 2012, 904-6
-
(2012)
Nat. Methods
, pp. 904-906
-
-
Yang, B.1
Wu, Y.J.2
Zhu, M.3
Fan, S.B.4
Lin, J.5
Zhang, K.6
Li, S.7
Chi, H.8
Li, Y.X.9
Chen, H.F.10
Luo, S.K.11
Ding, Y.H.12
Wang, L.H.13
Hao, Z.14
Xiu, L.Y.15
Chen, S.16
Ye, K.17
He, S.M.18
Dong, M.Q.19
-
25
-
-
84860602175
-
Cross-linking measurements of the Potato leafroll virus reveal protein interaction topologies required for virion stability, aphid transmission, and virus-plant interactions
-
Chavez, J. D.; Cilia, M.; Weisbrod, C. R.; Ju, H. J.; Eng, J. K.; Gray, S. M.; Bruce, J. E. Cross-linking measurements of the Potato leafroll virus reveal protein interaction topologies required for virion stability, aphid transmission, and virus-plant interactions J. Proteome Res. 2012, 11 (5) 2968-81
-
(2012)
J. Proteome Res.
, vol.11
, Issue.5
, pp. 2968-2981
-
-
Chavez, J.D.1
Cilia, M.2
Weisbrod, C.R.3
Ju, H.J.4
Eng, J.K.5
Gray, S.M.6
Bruce, J.E.7
-
26
-
-
63049119068
-
Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry
-
Zhang, H.; Tang, X.; Munske, G. R.; Tolic, N.; Anderson, G. A.; Bruce, J. E. Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry Mol. Cell. Proteomics 2009, 8 (3) 409-20
-
(2009)
Mol. Cell. Proteomics
, vol.8
, Issue.3
, pp. 409-420
-
-
Zhang, H.1
Tang, X.2
Munske, G.R.3
Tolic, N.4
Anderson, G.A.5
Bruce, J.E.6
-
27
-
-
9144232912
-
UniProt: The Universal Protein knowledgebase
-
Database Issue
-
Apweiler, R.; Bairoch, A.; Wu, C. H.; Barker, W. C.; Boeckmann, B.; Ferro, S.; Gasteiger, E.; Huang, H.; Lopez, R.; Magrane, M.; Martin, M. J.; Natale, D. A.; O'Donovan, C.; Redaschi, N.; Yeh, L. S. UniProt: the Universal Protein knowledgebase Nucleic Acids Res. 2004, 32 (Database issue) D115-9
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 115-119
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
28
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein, F. C.; Koetzle, T. F.; Williams, G. J.; Meyer, E. F., Jr.; Brice, M. D.; Rodgers, J. R.; Kennard, O.; Shimanouchi, T.; Tasumi, M. The Protein Data Bank: a computer-based archival file for macromolecular structures J. Mol. Biol. 1977, 112 (3) 535-42
-
(1977)
J. Mol. Biol.
, vol.112
, Issue.3
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer Jr., E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
29
-
-
33746124556
-
Biomolecules in the computer: Jmol to the rescue
-
Herraez, A. Biomolecules in the computer: Jmol to the rescue Biochem. Mol. Biol. Educ. 2006, 34 (4) 255-61
-
(2006)
Biochem. Mol. Biol. Educ.
, vol.34
, Issue.4
, pp. 255-261
-
-
Herraez, A.1
-
30
-
-
77956548953
-
Cytoscape Web: An interactive web-based network browser
-
Lopes, C. T.; Franz, M.; Kazi, F.; Donaldson, S. L.; Morris, Q.; Bader, G. D. Cytoscape Web: an interactive web-based network browser Bioinformatics 2010, 26 (18) 2347-8
-
(2010)
Bioinformatics
, vol.26
, Issue.18
, pp. 2347-2348
-
-
Lopes, C.T.1
Franz, M.2
Kazi, F.3
Donaldson, S.L.4
Morris, Q.5
Bader, G.D.6
-
31
-
-
84859204939
-
The IntAct molecular interaction database in 2012
-
Database Issue
-
Kerrien, S.; Aranda, B.; Breuza, L.; Bridge, A.; Broackes-Carter, F.; Chen, C.; Duesbury, M.; Dumousseau, M.; Feuermann, M.; Hinz, U.; Jandrasits, C.; Jimenez, R. C.; Khadake, J.; Mahadevan, U.; Masson, P.; Pedruzzi, I.; Pfeiffenberger, E.; Porras, P.; Raghunath, A.; Roechert, B.; Orchard, S.; Hermjakob, H. The IntAct molecular interaction database in 2012 Nucleic Acids Res. 2012, 40 (Database issue) D841-6
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 841-846
-
-
Kerrien, S.1
Aranda, B.2
Breuza, L.3
Bridge, A.4
Broackes-Carter, F.5
Chen, C.6
Duesbury, M.7
Dumousseau, M.8
Feuermann, M.9
Hinz, U.10
Jandrasits, C.11
Jimenez, R.C.12
Khadake, J.13
Mahadevan, U.14
Masson, P.15
Pedruzzi, I.16
Pfeiffenberger, E.17
Porras, P.18
Raghunath, A.19
Roechert, B.20
Orchard, S.21
Hermjakob, H.22
more..
-
32
-
-
58149185127
-
EcID. A database for the inference of functional interactions in E. coli
-
Database Issue
-
Andres Leon, E.; Ezkurdia, I.; Garcia, B.; Valencia, A.; Juan, D. EcID. A database for the inference of functional interactions in E. coli Nucleic Acids Res. 2009, 37 (Database issue) D629-35
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 629-635
-
-
Andres Leon, E.1
Ezkurdia, I.2
Garcia, B.3
Valencia, A.4
Juan, D.5
-
33
-
-
84875913034
-
In vivo protein interaction network identified with a novel real-time
-
10.1021/pr3011638
-
Weisbrod, C. R.; Chavez, J. D.; Eng, J. K.; Yang, L.; Zheng, C.; Bruce, J. In vivo protein interaction network identified with a novel real-time J. Proteome Res. 2013, 10.1021/pr3011638
-
(2013)
J. Proteome Res.
-
-
Weisbrod, C.R.1
Chavez, J.D.2
Eng, J.K.3
Yang, L.4
Zheng, C.5
Bruce, J.6
|