-
1
-
-
84864292228
-
Biologic drugs set to top 2012 sales
-
Biologic drugs set to top 2012 sales. Nat Med 18: 636–636.
-
Nat Med
, vol.18
, pp. 636
-
-
-
2
-
-
84892170718
-
What's fueling the biotech engine - 2012 to 2013
-
Aggarwal S, (2014) What's fueling the biotech engine - 2012 to 2013. Nat Biotech 32: 32–39.
-
(2014)
Nat Biotech
, vol.32
, pp. 32-39
-
-
Aggarwal, S.1
-
3
-
-
79851475357
-
Immunogenicity of protein therapeutics: The key causes, consequences and challenges
-
Baker MP, Reynolds HM, Lumicisi B, Bryson CJ, (2010) Immunogenicity of protein therapeutics: The key causes, consequences and challenges. Self Nonself 1: 314–322.
-
(2010)
Self Nonself
, vol.1
, pp. 314-322
-
-
Baker, M.P.1
Reynolds, H.M.2
Lumicisi, B.3
Bryson, C.J.4
-
4
-
-
79953681018
-
Immunogenicity of biotherapeutics in the context of developing biosimilars and biobetters
-
Barbosa MD, (2011) Immunogenicity of biotherapeutics in the context of developing biosimilars and biobetters. Drug Discov Today 16: 345–353.
-
(2011)
Drug Discov Today
, vol.16
, pp. 345-353
-
-
Barbosa, M.D.1
-
6
-
-
84922251082
-
Immunogenicity of protein therapeutics, or how to make antibodies without T-cells
-
Schellekens H, (2007) Immunogenicity of protein therapeutics, or how to make antibodies without T-cells. Inflammation Research 56: S351–S352.
-
(2007)
Inflammation Research
, vol.56
, pp. 351-352
-
-
Schellekens, H.1
-
7
-
-
77957336916
-
The Immunogenicity of Therapeutic Proteins
-
Schellekens H, (2010) The Immunogenicity of Therapeutic Proteins. Discovery Medicine 49: 560–564.
-
(2010)
Discovery Medicine
, vol.49
, pp. 560-564
-
-
Schellekens, H.1
-
8
-
-
17644370329
-
Cell biology of antigen processing in vitro and in vivo
-
Trombetta ES, Mellman I, (2005) Cell biology of antigen processing in vitro and in vivo. Annu Rev Immunol 23: 975–1028.
-
(2005)
Annu Rev Immunol
, vol.23
, pp. 975-1028
-
-
Trombetta, E.S.1
Mellman, I.2
-
9
-
-
28044433859
-
A beta-lactamase with reduced immunogenicity for the targeted delivery of chemotherapeutics using antibody-directed enzyme prodrug therapy
-
Harding FA, Liu AD, Stickler M, Razo OJ, Chin R, et al. (2005) A beta-lactamase with reduced immunogenicity for the targeted delivery of chemotherapeutics using antibody-directed enzyme prodrug therapy. Mol Cancer Ther 4: 1791–1800.
-
(2005)
Mol Cancer Ther
, vol.4
, pp. 1791-1800
-
-
Harding, F.A.1
Liu, A.D.2
Stickler, M.3
Razo, O.J.4
Chin, R.5
-
10
-
-
67651163873
-
Engineering and Biological Characterization of VB6-845, an Anti-EpCAM Immunotoxin Containing a T-cell Epitope-depleted Variant of the Plant Toxin Bouganin
-
Cizeau J, Grenkow DM, Brown JG, Entwistle J, MacDonald GC, (2009) Engineering and Biological Characterization of VB6-845, an Anti-EpCAM Immunotoxin Containing a T-cell Epitope-depleted Variant of the Plant Toxin Bouganin. Journal of Immunotherapy 32: 574–584 510.1097/CJI.1090b1013e3181a6981c.
-
(2009)
Journal of Immunotherapy
, vol.32
, pp. 574-584
-
-
Cizeau, J.1
Grenkow, D.M.2
Brown, J.G.3
Entwistle, J.4
MacDonald, G.C.5
-
11
-
-
84871392604
-
Identification and elimination of an immunodominant T-cell epitope in recombinant immunotoxins based on Pseudomonas exotoxin A
-
Mazor R, Vassall AN, Eberle JA, Beers R, Weldon JE, et al. (2012) Identification and elimination of an immunodominant T-cell epitope in recombinant immunotoxins based on Pseudomonas exotoxin A. Proceedings of the National Academy of Sciences 109: E3597–E3603.
-
(2012)
Proceedings of the National Academy of Sciences
, vol.109
, pp. 3597-3603
-
-
Mazor, R.1
Vassall, A.N.2
Eberle, J.A.3
Beers, R.4
Weldon, J.E.5
-
12
-
-
20144384746
-
Rationally Engineered Therapeutic Proteins with Reduced Immunogenicity
-
Tangri S, Mothe BR, Eisenbraun J, Sidney J, Southwood S, et al. (2005) Rationally Engineered Therapeutic Proteins with Reduced Immunogenicity. J Immunol 174: 3187–3196.
-
(2005)
J Immunol
, vol.174
, pp. 3187-3196
-
-
Tangri, S.1
Mothe, B.R.2
Eisenbraun, J.3
Sidney, J.4
Southwood, S.5
-
13
-
-
0036218529
-
Elimination of a human T-cell region in staphylokinase by T-cell screening and computer modeling
-
Warmerdam PAM, Plaisance S, Vanderlick K, Vandervoort P, Brepoels K, et al. (2002) Elimination of a human T-cell region in staphylokinase by T-cell screening and computer modeling. Thrombosis and Haemostasis 87: 666–673.
-
(2002)
Thrombosis and Haemostasis
, vol.87
, pp. 666-673
-
-
Warmerdam, P.A.M.1
Plaisance, S.2
Vanderlick, K.3
Vandervoort, P.4
Brepoels, K.5
-
14
-
-
2442661578
-
Elimination of an Immunodominant CD4+ T Cell Epitope in Human IFN-β Does Not Result in an In Vivo Response Directed at the Subdominant Epitope
-
Yeung VP, Chang J, Miller J, Barnett C, Stickler M, et al. (2004) Elimination of an Immunodominant CD4+ T Cell Epitope in Human IFN-β Does Not Result in an In Vivo Response Directed at the Subdominant Epitope. The Journal of Immunology 172: 6658–6665.
-
(2004)
The Journal of Immunology
, vol.172
, pp. 6658-6665
-
-
Yeung, V.P.1
Chang, J.2
Miller, J.3
Barnett, C.4
Stickler, M.5
-
15
-
-
21344466799
-
Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications
-
Bui HH, Sidney J, Peters B, Sathiamurthy M, Sinichi A, et al. (2005) Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications. Immunogenetics 57: 304–314.
-
(2005)
Immunogenetics
, vol.57
, pp. 304-314
-
-
Bui, H.H.1
Sidney, J.2
Peters, B.3
Sathiamurthy, M.4
Sinichi, A.5
-
16
-
-
7944237425
-
MHCPred: bringing a quantitative dimension to the online prediction of MHC binding
-
Guan P, Doytchinova IA, Zygouri C, Flower DR, (2003) MHCPred: bringing a quantitative dimension to the online prediction of MHC binding. Appl Bioinformatics 2: 63–66.
-
(2003)
Appl Bioinformatics
, vol.2
, pp. 63-66
-
-
Guan, P.1
Doytchinova, I.A.2
Zygouri, C.3
Flower, D.R.4
-
17
-
-
78149354807
-
NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure
-
Nielsen M, Justesen S, Lund O, Lundegaard C, Buus S, (2010) NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure. Immunome Res 6: 9.
-
(2010)
Immunome Res
, vol.6
, pp. 9
-
-
Nielsen, M.1
Justesen, S.2
Lund, O.3
Lundegaard, C.4
Buus, S.5
-
18
-
-
34547778364
-
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method
-
Nielsen M, Lundegaard C, Lund O, (2007) Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method. BMC Bioinformatics 8: 238.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 238
-
-
Nielsen, M.1
Lundegaard, C.2
Lund, O.3
-
19
-
-
55849146298
-
New approaches to prediction of immune responses to therapeutic proteins during preclinical development
-
Perry LC, Jones TD, Baker MP, (2008) New approaches to prediction of immune responses to therapeutic proteins during preclinical development. Drugs R D 9: 385–396.
-
(2008)
Drugs R D
, vol.9
, pp. 385-396
-
-
Perry, L.C.1
Jones, T.D.2
Baker, M.P.3
-
20
-
-
0036137241
-
ProPred: prediction of HLA-DR binding sites
-
Singh H, Raghava GP, (2001) ProPred: prediction of HLA-DR binding sites. Bioinformatics 17: 1236–1237.
-
(2001)
Bioinformatics
, vol.17
, pp. 1236-1237
-
-
Singh, H.1
Raghava, G.P.2
-
21
-
-
33750464517
-
SVRMHC prediction server for MHC-binding peptides
-
Wan J, Liu W, Xu Q, Ren Y, Flower DR, et al. (2006) SVRMHC prediction server for MHC-binding peptides. BMC Bioinformatics 7: 463.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 463
-
-
Wan, J.1
Liu, W.2
Xu, Q.3
Ren, Y.4
Flower, D.R.5
-
22
-
-
42949139524
-
A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
-
Wang P, Sidney J, Dow C, Mothe B, Sette A, et al. (2008) A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach. PLoS Comput Biol 4: e1000048.
-
(2008)
PLoS Comput Biol
, vol.4
, pp. 1000048
-
-
Wang, P.1
Sidney, J.2
Dow, C.3
Mothe, B.4
Sette, A.5
-
24
-
-
79952128822
-
Therapeutic enzyme deimmunization by combinatorial T-cell epitope removal using neutral drift
-
Cantor JR, Yoo TH, Dixit A, Iverson BL, Forsthuber TG, et al. (2011) Therapeutic enzyme deimmunization by combinatorial T-cell epitope removal using neutral drift. Proc Natl Acad Sci U S A 108: 1272–1277.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 1272-1277
-
-
Cantor, J.R.1
Yoo, T.H.2
Dixit, A.3
Iverson, B.L.4
Forsthuber, T.G.5
-
25
-
-
84867004820
-
Design and analysis of immune-evading enzymes for ADEPT therapy
-
Osipovitch DC, Parker AS, Makokha CD, Desrosiers J, Kett WC, et al. (2012) Design and analysis of immune-evading enzymes for ADEPT therapy. Protein Eng Des Sel 25: 613–623.
-
(2012)
Protein Eng Des Sel
, vol.25
, pp. 613-623
-
-
Osipovitch, D.C.1
Parker, A.S.2
Makokha, C.D.3
Desrosiers, J.4
Kett, W.C.5
-
26
-
-
33644634447
-
De-immunization of therapeutic proteins by T-cell epitope modification
-
De Groot AS, Knopp PM, Martin W, (2005) De-immunization of therapeutic proteins by T-cell epitope modification. Dev Biol (Basel) 122: 171–194.
-
(2005)
Dev Biol (Basel)
, vol.122
, pp. 171-194
-
-
De Groot, A.S.1
Knopp, P.M.2
Martin, W.3
-
27
-
-
77950673538
-
Optimization algorithms for functional deimmunization of therapeutic proteins
-
Parker AS, Zheng W, Griswold KE, Bailey-Kellogg C, (2010) Optimization algorithms for functional deimmunization of therapeutic proteins. BMC Bioinformatics 11: 180.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 180
-
-
Parker, A.S.1
Zheng, W.2
Griswold, K.E.3
Bailey-Kellogg, C.4
-
28
-
-
80052071931
-
Optimization of therapeutic proteins to delete T-cell epitopes while maintaining beneficial residue interactions
-
Parker AS, Griswold KE, Bailey-Kellogg C, (2011) Optimization of therapeutic proteins to delete T-cell epitopes while maintaining beneficial residue interactions. J Bioinform Comput Biol 9: 207–229.
-
(2011)
J Bioinform Comput Biol
, vol.9
, pp. 207-229
-
-
Parker, A.S.1
Griswold, K.E.2
Bailey-Kellogg, C.3
-
29
-
-
84873587155
-
Structure-guided deimmunization of therapeutic proteins
-
Parker AS, Choi Y, Griswold KE, Bailey-Kellogg C, (2013) Structure-guided deimmunization of therapeutic proteins. J Comput Biol 20: 152–165.
-
(2013)
J Comput Biol
, vol.20
, pp. 152-165
-
-
Parker, A.S.1
Choi, Y.2
Griswold, K.E.3
Bailey-Kellogg, C.4
-
30
-
-
84922260559
-
-
Choi Y, Griswold Ke, Bailey-Kellogg C Structure-based redesign of proteins for minimal T-cell epitope content.
-
-
-
-
31
-
-
84922481168
-
-
Salvat RS, Parker AS, Guilliams A, Choi Y, Bailey-Kellogg C, et al. (2014) Computationally Driven Deletion of Broadly Distributed T cell Epitopes in a Biotherapeutic Candidate. Cellular and Molecular Life Sciences: 1–12.
-
-
-
-
32
-
-
84856786576
-
A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments
-
He L, Friedman AM, Bailey-Kellogg C, (2012) A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments. Proteins: Structure, Function, and Bioinformatics 80: 790–806.
-
(2012)
Proteins: Structure, Function, and Bioinformatics
, vol.80
, pp. 790-806
-
-
He, L.1
Friedman, A.M.2
Bailey-Kellogg, C.3
-
33
-
-
84897423891
-
A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes
-
Salvat RS, Moise L, C B-K, Griswold KE, (2014) A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes. J Vis Exp 85: e51308.
-
(2014)
J Vis Exp
, vol.85
, pp. 51308
-
-
Salvat, R.S.1
Moise, L.2
C, B.-K.3
Griswold, K.E.4
-
34
-
-
70449359806
-
-
Nielsen M, Lund O (2009) NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction. BMC Bioinformatics 10.
-
, vol.10
-
-
-
35
-
-
33645871000
-
Antibiotic-refractory Lyme arthritis is associated with HLA-DR molecules that bind a Borrelia burgdorferi peptide
-
Steere AC, Klitz W, Drouin EE, Falk BA, Kwok WW, et al. (2006) Antibiotic-refractory Lyme arthritis is associated with HLA-DR molecules that bind a Borrelia burgdorferi peptide. The Journal of Experimental Medicine 203: 961–971.
-
(2006)
The Journal of Experimental Medicine
, vol.203
, pp. 961-971
-
-
Steere, A.C.1
Klitz, W.2
Drouin, E.E.3
Falk, B.A.4
Kwok, W.W.5
-
36
-
-
0033021020
-
Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices
-
Sturniolo T, Bono E, Ding J, Raddrizzani L, Tuereci O, et al. (1999) Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices. Nat Biotech 17: 555–561.
-
(1999)
Nat Biotech
, vol.17
, pp. 555-561
-
-
Sturniolo, T.1
Bono, E.2
Ding, J.3
Raddrizzani, L.4
Tuereci, O.5
-
37
-
-
84857355243
-
Effect of HLA DR epitope de-immunization of Factor VIII in vitro and in vivo
-
Moise L, Song C, Martin WD, Tassone R, De Groot AS, et al. (2012) Effect of HLA DR epitope de-immunization of Factor VIII in vitro and in vivo. Clinical Immunology 142: 320–331.
-
(2012)
Clinical Immunology
, vol.142
, pp. 320-331
-
-
Moise, L.1
Song, C.2
Martin, W.D.3
Tassone, R.4
De Groot, A.S.5
-
38
-
-
70350072668
-
In silico-accelerated identification of conserved and immunogenic variola/vaccinia T-cell epitopes
-
Moise L, McMurry JA, Buus S, Frey S, Martin WD, et al. (2009) In silico-accelerated identification of conserved and immunogenic variola/vaccinia T-cell epitopes. Vaccine 27: 6471–6479.
-
(2009)
Vaccine
, vol.27
, pp. 6471-6479
-
-
Moise, L.1
McMurry, J.A.2
Buus, S.3
Frey, S.4
Martin, W.D.5
-
39
-
-
63749128279
-
Reducing risk, improving outcomes: Bioengineering less immunogenic protein therapeutics
-
De Groot AS, Martin W, (2009) Reducing risk, improving outcomes: Bioengineering less immunogenic protein therapeutics. Clinical Immunology 131: 189–201.
-
(2009)
Clinical Immunology
, vol.131
, pp. 189-201
-
-
De Groot, A.S.1
Martin, W.2
-
40
-
-
0036838698
-
The HLA Molecules DQA1*0501/B1*0201 and DQA1*0301/B1*0302 Share an Extensive Overlap in Peptide Binding Specificity
-
Sidney J, del Guercio M-F, Southwood S, Sette A, (2002) The HLA Molecules DQA1*0501/B1*0201 and DQA1*0301/B1*0302 Share an Extensive Overlap in Peptide Binding Specificity. The Journal of Immunology 169: 5098–5108.
-
(2002)
The Journal of Immunology
, vol.169
, pp. 5098-5108
-
-
Sidney, J.1
del Guercio, M.-F.2
Southwood, S.3
Sette, A.4
-
41
-
-
0142213648
-
The relationship between predicted peptide-MHC class II affinity and T-cell activation in a HLA-DR beta 1*0401 transgenic mouse model
-
Hill JA, Wang DQ, Jevnikar AM, Cairns E, Bell DA, (2003) The relationship between predicted peptide-MHC class II affinity and T-cell activation in a HLA-DR beta 1*0401 transgenic mouse model. Arthritis Research & Therapy 5: R40–R48.
-
(2003)
Arthritis Research & Therapy
, vol.5
, pp. 40-48
-
-
Hill, J.A.1
Wang, D.Q.2
Jevnikar, A.M.3
Cairns, E.4
Bell, D.A.5
-
42
-
-
0032055915
-
Several common HLA-DR types share largely overlapping peptide binding repertoires
-
Southwood S, Sidney J, Kondo A, del Guercio MF, Appella E, et al. (1998) Several common HLA-DR types share largely overlapping peptide binding repertoires. Journal of Immunology 160: 3363–3373.
-
(1998)
Journal of Immunology
, vol.160
, pp. 3363-3373
-
-
Southwood, S.1
Sidney, J.2
Kondo, A.3
del Guercio, M.F.4
Appella, E.5
-
43
-
-
0036218529
-
Elimination of a human T-cell region in staphylokinase by T-cell screening and computer modeling
-
Warmerdam PA, Plaisance S, Vanderlick K, Vandervoort P, Brepoels K, et al. (2002) Elimination of a human T-cell region in staphylokinase by T-cell screening and computer modeling. Thromb Haemost 87: 666–673.
-
(2002)
Thromb Haemost
, vol.87
, pp. 666-673
-
-
Warmerdam, P.A.1
Plaisance, S.2
Vanderlick, K.3
Vandervoort, P.4
Brepoels, K.5
-
44
-
-
64249160740
-
Reducing the Immunogenicity of Protein Therapeutics
-
Onda M, (2009) Reducing the Immunogenicity of Protein Therapeutics. Current Drug Targets 10: 131–139.
-
(2009)
Current Drug Targets
, vol.10
, pp. 131-139
-
-
Onda, M.1
-
45
-
-
0023723196
-
Oligopeptide Biases in Protein Sequences and Their Use in Predicting Protein Coding Regions in Nucleotide-Sequences
-
McCaldon P, Argos P, (1988) Oligopeptide Biases in Protein Sequences and Their Use in Predicting Protein Coding Regions in Nucleotide-Sequences. Proteins-Structure Function and Genetics 4: 99–122.
-
(1988)
Proteins-Structure Function and Genetics
, vol.4
, pp. 99-122
-
-
McCaldon, P.1
Argos, P.2
-
46
-
-
63749128279
-
Reducing risk, improving outcomes: bioengineering less immunogenic protein therapeutics
-
De Groot AS, Martin W, (2009) Reducing risk, improving outcomes: bioengineering less immunogenic protein therapeutics. Clin Immunol 131: 189–201.
-
(2009)
Clin Immunol
, vol.131
, pp. 189-201
-
-
De Groot, A.S.1
Martin, W.2
-
47
-
-
84886544432
-
Evaluating the immunogenicity of protein drugs by applying in vitro MHC binding data and the immune epitope database and analysis resource
-
Paul S, Kolla RV, Sidney J, Weiskopf D, Fleri W, et al. (2013) Evaluating the immunogenicity of protein drugs by applying in vitro MHC binding data and the immune epitope database and analysis resource. Clinical & Developmental Immunology 2013: 467852.
-
(2013)
Clinical & Developmental Immunology
, vol.2013
, pp. 467852
-
-
Paul, S.1
Kolla, R.V.2
Sidney, J.3
Weiskopf, D.4
Fleri, W.5
|