-
1
-
-
1642302923
-
Immunoinformatics and the prediction of immunogenicity
-
Flower DR, Doytchinova IA: Immunoinformatics and the prediction of immunogenicity. Appl Bioinformatics 2002, 1(4):167-176.
-
(2002)
Appl Bioinformatics
, vol.1
, Issue.4
, pp. 167-176
-
-
Flower, D.R.1
Doytchinova, I.A.2
-
2
-
-
0029610875
-
Flexible docking of peptides to class I major-histocompatibility-complex receptors
-
Rosenfeld R, Zheng Q, Vajda S, DeLisi C: Flexible docking of peptides to class I major-histocompatibility-complex receptors. Genet Anal 1995, 12(1):1-21.
-
(1995)
Genet Anal
, vol.12
, Issue.1
, pp. 1-21
-
-
Rosenfeld, R.1
Zheng, Q.2
Vajda, S.3
DeLisi, C.4
-
3
-
-
33646876222
-
Prediction of HLA-DQ3.2beta ligands: Evidence of multiple registers in class II binding peptides
-
Tong JC, Zhang GL, Tan TW, August JT, Brusic V, Ranganathan S: Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides. Bioinformatics 2006, 22(10):1232-1238.
-
(2006)
Bioinformatics
, vol.22
, Issue.10
, pp. 1232-1238
-
-
Tong, J.C.1
Zhang, G.L.2
Tan, T.W.3
August, J.T.4
Brusic, V.5
Ranganathan, S.6
-
4
-
-
33645034411
-
Structural prediction of peptides binding to MHC class I molecules
-
Bui HH, Schiewe AJ, von Grafenstein H, Haworth IS: Structural prediction of peptides binding to MHC class I molecules. Proteins 2006, 63(1):43-52.
-
(2006)
Proteins
, vol.63
, Issue.1
, pp. 43-52
-
-
Bui, H.H.1
Schiewe, A.J.2
von Grafenstein, H.3
Haworth, I.S.4
-
5
-
-
33747892659
-
DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations
-
Antes I, Siu SW, Lengauer T: DynaPred: a structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. Bioinformatics 2006, 22(14):e16-24.
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Antes, I.1
Siu, S.W.2
Lengauer, T.3
-
6
-
-
33747879440
-
Learning MHC 1 - Peptide binding
-
Jojic N, Reyes-Gomez M, Heckerman D, Kadie C, Schueler-Furman O: Learning MHC 1 - peptide binding. Bioinformatics 2006, 22(14):e227-35.
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Jojic, N.1
Reyes-Gomez, M.2
Heckerman, D.3
Kadie, C.4
Schueler-Furman, O.5
-
7
-
-
0028052724
-
Scheme for ranking potential HLA-A2 binding peptide side-chains
-
Parker KC, Bednarek MA, Coligan JE: Scheme for ranking potential HLA-A2 binding peptide side-chains. J Immunol 1994, 152(1):163-175.
-
(1994)
J Immunol
, vol.152
, Issue.1
, pp. 163-175
-
-
Parker, K.C.1
Bednarek, M.A.2
Coligan, J.E.3
-
8
-
-
0033388725
-
SYFPEITH1: Database for MHC ligands and peptide motifs
-
Rammensee H, Bachmann J, Emmerich NP, Bachor OA, Stevanovic S: SYFPEITH1: database for MHC ligands and peptide motifs. Immunogenetics 1999, 50(3-4):213-219.
-
(1999)
Immunogenetics
, vol.50
, Issue.3-4
, pp. 213-219
-
-
Rammensee, H.1
Bachmann, J.2
Emmerich, N.P.3
Bachor, O.A.4
Stevanovic, S.5
-
9
-
-
0036727207
-
Prediction of MHC class I binding peptides using profile motifs
-
Reche PA, Glutting JP, Reinherz EL: Prediction of MHC class I binding peptides using profile motifs. Hum Immunol 2002, 63(9):701-709.
-
(2002)
Hum Immunol
, vol.63
, Issue.9
, pp. 701-709
-
-
Reche, P.A.1
Glutting, J.P.2
Reinherz, E.L.3
-
10
-
-
0142174642
-
Prediction of MHC class I binding peptides, using SVMHC
-
Donnes P, Elofsson A: Prediction of MHC class I binding peptides, using SVMHC, BMC Bioinformatics 2002, 3(1):25.
-
(2002)
BMC Bioinformatics
, vol.3
, Issue.1
, pp. 25
-
-
Donnes, P.1
Elofsson, A.2
-
11
-
-
23144455463
-
MULTIPRED: A computational system for prediction of promiscuous HLA binding peptides
-
(Web Server issue)
-
Zhang GL, Khan AM, Srinivasan KN, August JT, Brusic V: MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. Nucleic Acids Res 2005, 33(Web Server issue):W172-9.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Zhang, G.L.1
Khan, A.M.2
Srinivasan, K.N.3
August, J.T.4
Brusic, V.5
-
12
-
-
0034776133
-
Fuzzy neural network-based prediction of the motif for MHC class II binding peptides
-
Noguchi H, Hanai T, Honda H, Harrison LC, Kobayashi T: Fuzzy neural network-based prediction of the motif for MHC class II binding peptides. J Biosci Bioeng 2001, 92(3):227-231.
-
(2001)
J Biosci Bioeng
, vol.92
, Issue.3
, pp. 227-231
-
-
Noguchi, H.1
Hanai, T.2
Honda, H.3
Harrison, L.C.4
Kobayashi, T.5
-
13
-
-
18244389000
-
Peptide binding at class I major histocompatibility complex scored with linear functions and support vector machines
-
Riedesel H, Kolbeck B, Schmetzer O, Knapp EW: Peptide binding at class I major histocompatibility complex scored with linear functions and support vector machines. Genome Inform 2004, 15(1):198-212.
-
(2004)
Genome Inform
, vol.15
, Issue.1
, pp. 198-212
-
-
Riedesel, H.1
Kolbeck, B.2
Schmetzer, O.3
Knapp, E.W.4
-
14
-
-
20444386168
-
Predictive Bayesian neural network models of MHC class II peptide binding
-
Burden FR, Winkler DA: Predictive Bayesian neural network models of MHC class II peptide binding. J Mol Graph Model 2005, 23(6):481-489.
-
(2005)
J Mol Graph Model
, vol.23
, Issue.6
, pp. 481-489
-
-
Burden, F.R.1
Winkler, D.A.2
-
15
-
-
0036706875
-
A comparative molecular similarity index analysis (CoMSIA) study identifies an HLA-A2 binding supermotif
-
Doytchinova IA, Flower DR: A comparative molecular similarity index analysis (CoMSIA) study identifies an HLA-A2 binding supermotif. J Comput Aided Mol Des 2002, 16(8-9):535-544.
-
(2002)
J Comput Aided Mol Des
, vol.16
, Issue.8-9
, pp. 535-544
-
-
Doytchinova, I.A.1
Flower, D.R.2
-
16
-
-
0036589852
-
Additive method for the prediction of protein-peptide binding affinity. Application to the MHC class I molecule HLA-A*0201
-
Doytchinova IA, Blythe MJ, Flower DR: Additive method for the prediction of protein-peptide binding affinity. Application to the MHC class I molecule HLA-A*0201. J Proteome Res 2002, 1(3):263-272.
-
(2002)
J Proteome Res
, vol.1
, Issue.3
, pp. 263-272
-
-
Doytchinova, I.A.1
Blythe, M.J.2
Flower, D.R.3
-
17
-
-
0344360732
-
Towards the in silico identification of class II restricted T-cell epitopes: A partial least squares iterative self-consistent algorithm for affinity prediction
-
Doytchinova IA, Flower DR: Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction. Bioinformatics 2003, 19(17):2263-2270.
-
(2003)
Bioinformatics
, vol.19
, Issue.17
, pp. 2263-2270
-
-
Doytchinova, I.A.1
Flower, D.R.2
-
18
-
-
1342288007
-
SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence
-
Bhasin M, Raghava GP: SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence. Bioinformatics 2004, 20(3):421-423.
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 421-423
-
-
Bhasin, M.1
Raghava, G.P.2
-
19
-
-
33746352651
-
Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models
-
Liu W, Meng X, Xu Q, Flower DR, Li T: Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models. BMC Bioinformatics 2006, 7(1):182.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 182
-
-
Liu, W.1
Meng, X.2
Xu, Q.3
Flower, D.R.4
Li, T.5
-
20
-
-
0003710380
-
LIBSVM - A library for support vector machines
-
Chang CC, Lin CJ: LIBSVM - a library for support vector machines [http://www.csie.ntu.edu.tw/~cjlin/libsvm/].
-
-
-
Chang, C.C.1
Lin, C.J.2
-
21
-
-
28544438391
-
Anti-jen: A quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data
-
Toseland CP, Clayton DJ, McSparron H, Hemsley SL, Blythe MJ, Paine K, Doytchinova IA, Guan P, Hattotuwagama CK, Flower DR: Anti-Jen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data. Immunome Res 2005, 1(1):4.
-
(2005)
Immunome Res
, vol.1
, Issue.1
, pp. 4
-
-
Toseland, C.P.1
Clayton, D.J.2
McSparron, H.3
Hemsley, S.L.4
Blythe, M.J.5
Paine, K.6
Doytchinova, I.A.7
Guan, P.8
Hattotuwagama, C.K.9
Flower, D.R.10
-
22
-
-
0037102953
-
Physicochemical explanation of peptide binding the HLA-A*0201 major histocompatibility complex: A three-dimensional quantitative structure-activity relationship study
-
Doytchinova IA, Flower DR: Physicochemical explanation of peptide binding the HLA-A*0201 major histocompatibility complex: a three-dimensional quantitative structure-activity relationship study. Proteins 2002, 48(3):505-518.
-
(2002)
Proteins
, vol.48
, Issue.3
, pp. 505-518
-
-
Doytchinova, I.A.1
Flower, D.R.2
-
23
-
-
84874655210
-
-
SVRMHC server additional information
-
SVRMHC server additional information [http://SVRMHC.umn.edu/SVRMHCdb/ additional_info.htm].
-
-
-
|