메뉴 건너뛰기




Volumn 13, Issue 12, 2014, Pages 3572-3584

Integrated omic analysis of oropharyngeal carcinomas reveals human papillomavirus (HPV) - Dependent regulation of the activator protein 1 (AP-1) pathway

Author keywords

[No Author keywords available]

Indexed keywords

5' METHYLTHIOADENOSINE PHOSPHORYLASE; ANTINEOPLASTIC AGENT; BETA1 INTEGRIN; CORTACTIN; DNA; FOCAL ADHESION KINASE; FORMALDEHYDE; MESSENGER RNA; ONCOPROTEIN; PARAFFIN; PROTEIN; STRESS ACTIVATED PROTEIN KINASE 1; TRANSCRIPTION FACTOR AP 1; 5'-METHYLTHIOADENOSINE PHOSPHORYLASE; CTTN PROTEIN, HUMAN; FOCAL ADHESION KINASE 1; PTK2 PROTEIN, HUMAN; PURINE NUCLEOSIDE PHOSPHORYLASE;

EID: 84922158627     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M114.041764     Document Type: Article
Times cited : (22)

References (52)
  • 1
    • 39149104081 scopus 로고    scopus 로고
    • Incidence trends for human papillomavirus-related and -unrelated oral squamous cell carcinomas in the United States
    • Chaturvedi, A. K., Engels, E. A., Anderson, W. F., and Gillison, M. L. (2008) Incidence trends for human papillomavirus-related and -unrelated oral squamous cell carcinomas in the United States. J. Clin. Oncol. 26, 612-619
    • (2008) J. Clin. Oncol. , vol.26 , pp. 612-619
    • Chaturvedi, A.K.1    Engels, E.A.2    Anderson, W.F.3    Gillison, M.L.4
  • 6
    • 0036559896 scopus 로고    scopus 로고
    • Papillomaviruses and cancer: From basic studies to clinical application
    • zur Hausen, H. (2002) Papillomaviruses and cancer: from basic studies to clinical application. Nat. Rev. Cancer 2, 342-350
    • (2002) Nat. Rev. Cancer , vol.2 , pp. 342-350
    • Zur Hausen, H.1
  • 7
    • 84858069836 scopus 로고    scopus 로고
    • p16 expression as a surrogate marker for HPV-related oropharyngeal carcinoma: A guide for interpretative relevance and consistency
    • El-Naggar, A. K., and Westra, W. H. (2012) p16 expression as a surrogate marker for HPV-related oropharyngeal carcinoma: a guide for interpretative relevance and consistency. Head Neck 34, 459-461
    • (2012) Head Neck , vol.34 , pp. 459-461
    • El-Naggar, A.K.1    Westra, W.H.2
  • 11
    • 84864138332 scopus 로고    scopus 로고
    • Primary chemotherapy and radiation as a treatment strategy for HPV-positive oropharyngeal cancer
    • Lui, V. W., and Grandis, J. R. (2012) Primary chemotherapy and radiation as a treatment strategy for HPV-positive oropharyngeal cancer. Head Neck Pathol. 6 Suppl 1, S91-S97
    • (2012) Head Neck Pathol. , vol.6 , pp. S91-S97
    • Lui, V.W.1    Grandis, J.R.2
  • 12
    • 84859965675 scopus 로고    scopus 로고
    • Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues
    • Magdeldin, S., and Yamamoto, T. (2012) Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues. Proteomics 12, 1045-1058
    • (2012) Proteomics , vol.12 , pp. 1045-1058
    • Magdeldin, S.1    Yamamoto, T.2
  • 13
    • 79953072078 scopus 로고    scopus 로고
    • The use of formalin fixed wax embedded tissue for proteomic analysis
    • Ralton, L. D., and Murray, G. I. (2011) The use of formalin fixed wax embedded tissue for proteomic analysis. J. Clin. Pathol. 64, 297-302
    • (2011) J. Clin. Pathol. , vol.64 , pp. 297-302
    • Ralton, L.D.1    Murray, G.I.2
  • 15
    • 84862777470 scopus 로고    scopus 로고
    • Proteome of formalin-fixed paraffin-embedded pancreatic ductal adenocarcinoma and lymph node metastases
    • Naidoo, K., Jones, R., Dmitrovic, B., Wijesuriya, N., Kocher, H., Hart, I. R., and Crnogorac-Jurcevic, T. (2012) Proteome of formalin-fixed paraffin-embedded pancreatic ductal adenocarcinoma and lymph node metastases. J. Pathol. 226, 756-763
    • (2012) J. Pathol. , vol.226 , pp. 756-763
    • Naidoo, K.1    Jones, R.2    Dmitrovic, B.3    Wijesuriya, N.4    Kocher, H.5    Hart, I.R.6    Crnogorac-Jurcevic, T.7
  • 16
    • 84872685287 scopus 로고    scopus 로고
    • Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma
    • Wisniewski, J. R., Ostasiewicz, P., Dus, K., Zielinska, D. F., Gnad, F., and Mann, M. (2012) Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma. Mol. Syst. Biol. 8, 611
    • (2012) Mol. Syst. Biol. , vol.8 , pp. 611
    • Wisniewski, J.R.1    Ostasiewicz, P.2    Dus, K.3    Zielinska, D.F.4    Gnad, F.5    Mann, M.6
  • 18
    • 0014937223 scopus 로고
    • Central dogma of molecular biology
    • Crick, F. (1970) Central dogma of molecular biology. Nature 227, 561-563
    • (1970) Nature , vol.227 , pp. 561-563
    • Crick, F.1
  • 20
    • 84908556420 scopus 로고    scopus 로고
    • Oncoproteogenomics: Cancer proteomics joins forces with genomics
    • Alfaro, A. A., Sinha, A., Kislinger, T., and Boutros, P. C. (2014) Oncoproteogenomics: cancer proteomics joins forces with genomics. Nat. Methods, 11, 1107-1113
    • (2014) Nat. Methods , vol.11 , pp. 1107-1113
    • Alfaro, A.A.1    Sinha, A.2    Kislinger, T.3    Boutros, P.C.4
  • 24
    • 45749106371 scopus 로고    scopus 로고
    • Identification of pathways associated with invasive behavior by ovarian cancer cells using multidimensional protein identification technology (MudPIT)
    • Sodek, K. L., Evangelou, A. I., Ignatchenko, A., Agochiya, M., Brown, T. J., Ringuette, M. J., Jurisica, I., and Kislinger, T. (2008) Identification of pathways associated with invasive behavior by ovarian cancer cells using multidimensional protein identification technology (MudPIT). Mol. Biosyst. 4, 762-773
    • (2008) Mol. Biosyst. , vol.4 , pp. 762-773
    • Sodek, K.L.1    Evangelou, A.I.2    Ignatchenko, A.3    Agochiya, M.4    Brown, T.J.5    Ringuette, M.J.6    Jurisica, I.7    Kislinger, T.8
  • 25
    • 79953062776 scopus 로고    scopus 로고
    • Abacus: A computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis
    • Fermin, D., Basrur, V., Yocum, A. K., and Nesvizhskii, A. I. (2011) Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis. Proteomics 11, 1340-1345
    • (2011) Proteomics , vol.11 , pp. 1340-1345
    • Fermin, D.1    Basrur, V.2    Yocum, A.K.3    Nesvizhskii, A.I.4
  • 27
    • 84870244924 scopus 로고    scopus 로고
    • Proteomic analysis of oropharyngeal carcinomas reveals novel HPV-associated biological pathways
    • Slebos, R. J., Jehmlich, N., Brown, B., Yin, Z., Chung, C. H., Yarbrough, W. G., and Liebler, D. C. (2013) Proteomic analysis of oropharyngeal carcinomas reveals novel HPV-associated biological pathways. Int. J. Cancer 132, 568-579
    • (2013) Int. J. Cancer , vol.132 , pp. 568-579
    • Slebos, R.J.1    Jehmlich, N.2    Brown, B.3    Yin, Z.4    Chung, C.H.5    Yarbrough, W.G.6    Liebler, D.C.7
  • 30
    • 84897022815 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of urothelial bladder carcinoma
    • Cancer Genome Atlas (2014) Comprehensive molecular characterization of urothelial bladder carcinoma. Nature 507, 315-322
    • (2014) Nature , vol.507 , pp. 315-322
    • Cancer Genome Atlas1
  • 31
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
    • Li, B., and Dewey, C. N. (2011) RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323
    • (2011) BMC Bioinformatics , vol.12 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 32
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • Cancer Genome Atlas (2008) Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455, 1061-1068
    • (2008) Nature , vol.455 , pp. 1061-1068
    • Cancer Genome Atlas1
  • 33
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 34
    • 0037080483 scopus 로고    scopus 로고
    • E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints
    • Ren, B., Cam, H., Takahashi, Y., Volkert, T., Terragni, J., Young, R. A., and Dynlacht, B. D. (2002) E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints. Genes Dev. 16, 245-256
    • (2002) Genes Dev. , vol.16 , pp. 245-256
    • Ren, B.1    Cam, H.2    Takahashi, Y.3    Volkert, T.4    Terragni, J.5    Young, R.A.6    Dynlacht, B.D.7
  • 36
    • 0242691046 scopus 로고    scopus 로고
    • AP-1: A double-edged sword in tumorigenesis
    • Eferl, R., and Wagner, E. F. (2003) AP-1: a double-edged sword in tumorigenesis. Nat. Rev. Cancer 3, 859-868
    • (2003) Nat. Rev. Cancer , vol.3 , pp. 859-868
    • Eferl, R.1    Wagner, E.F.2
  • 38
    • 59649114353 scopus 로고    scopus 로고
    • Human papillomavirus E7 protein deregulates mitosis via an association with nuclear mitotic apparatus protein 1
    • Nguyen, C. L., and Munger, K. (2009) Human papillomavirus E7 protein deregulates mitosis via an association with nuclear mitotic apparatus protein 1. J. Virol. 83, 1700-1707
    • (2009) J. Virol. , vol.83 , pp. 1700-1707
    • Nguyen, C.L.1    Munger, K.2
  • 42
    • 84897994499 scopus 로고    scopus 로고
    • The interplay between HPV and host immunity in head and neck squamous cell carcinoma
    • Andersen, A. S., Koldjaer Solling, A. S., Ovesen, T., and Rusan, M. (2013) The interplay between HPV and host immunity in head and neck squamous cell carcinoma. Int. J. Cancer 134, 2755-2763
    • (2013) Int. J. Cancer , vol.134 , pp. 2755-2763
    • Andersen, A.S.1    Koldjaer Solling, A.S.2    Ovesen, T.3    Rusan, M.4
  • 45
    • 59649084693 scopus 로고    scopus 로고
    • Aggressiveness of HNSCC tumors depends on expression levels of cortactin, a gene in the 11q13 amplicon
    • Clark, E. S., Brown, B., Whigham, A. S., Kochaishvili, A., Yarbrough, W. G., and Weaver, A. M. (2009) Aggressiveness of HNSCC tumors depends on expression levels of cortactin, a gene in the 11q13 amplicon. Oncogene 28, 431-444
    • (2009) Oncogene , vol.28 , pp. 431-444
    • Clark, E.S.1    Brown, B.2    Whigham, A.S.3    Kochaishvili, A.4    Yarbrough, W.G.5    Weaver, A.M.6
  • 46
    • 77949890036 scopus 로고    scopus 로고
    • Biological and clinical relevance of transcriptionally active human papillomavirus (HPV) infection in oropharynx squamous cell carcinoma
    • Jung, A. C., Briolat, J., Millon, R., de Reynies, A., Rickman, D., Thomas, E., Abecassis, J., Clavel, C., and Wasylyk, B. (2010) Biological and clinical relevance of transcriptionally active human papillomavirus (HPV) infection in oropharynx squamous cell carcinoma. Int. J. Cancer 126, 1882-1894
    • (2010) Int. J. Cancer , vol.126 , pp. 1882-1894
    • Jung, A.C.1    Briolat, J.2    Millon, R.3    De Reynies, A.4    Rickman, D.5    Thomas, E.6    Abecassis, J.7    Clavel, C.8    Wasylyk, B.9
  • 47
    • 0026355723 scopus 로고
    • CSK: A protein-tyrosine kinase involved in regulation of src family kinases
    • Okada, M., Nada, S., Yamanashi, Y., Yamamoto, T., and Nakagawa, H. (1991) CSK: a protein-tyrosine kinase involved in regulation of src family kinases. J. Biol. Chem. 266, 24249-24252
    • (1991) J. Biol. Chem. , vol.266 , pp. 24249-24252
    • Okada, M.1    Nada, S.2    Yamanashi, Y.3    Yamamoto, T.4    Nakagawa, H.5
  • 48
    • 79953319582 scopus 로고    scopus 로고
    • Targeting tumors that lack methylthioadenosine phosphorylase (MTAP) activity: Current strategies
    • Bertino, J. R., Waud, W. R., Parker, W. B., and Lubin, M. (2011) Targeting tumors that lack methylthioadenosine phosphorylase (MTAP) activity: current strategies. Cancer Biol. Ther. 11, 627-632
    • (2011) Cancer Biol. Ther. , vol.11 , pp. 627-632
    • Bertino, J.R.1    Waud, W.R.2    Parker, W.B.3    Lubin, M.4
  • 49
    • 0029670305 scopus 로고    scopus 로고
    • Codeletion of the genes for p16INK4, methylthioadenosine phosphorylase, interferon-alpha1, in-terferon-beta1, and other 9p21 markers in human malignant cell lines
    • Zhang, H., Chen, Z. H., and Savarese, T. M. (1996) Codeletion of the genes for p16INK4, methylthioadenosine phosphorylase, interferon-alpha1, in-terferon-beta1, and other 9p21 markers in human malignant cell lines. Cancer Genet. Cytogenet. 86, 22-28
    • (1996) Cancer Genet. Cytogenet. , vol.86 , pp. 22-28
    • Zhang, H.1    Chen, Z.H.2    Savarese, T.M.3
  • 50
    • 66749168748 scopus 로고    scopus 로고
    • Selective killing of tumors deficient in methylthioadenosine phosphorylase: A novel strategy
    • Lubin, M., and Lubin, A. (2009) Selective killing of tumors deficient in methylthioadenosine phosphorylase: a novel strategy. PLoS One 4, e5735
    • (2009) PLoS One , vol.4
    • Lubin, M.1    Lubin, A.2
  • 51
    • 84922129287 scopus 로고    scopus 로고
    • Validation of two biologically distinct HPV-associated head and neck cancer subtypes and correlation with E5 expression
    • 32:5s 2014
    • Zuo, Z., Khattri, A., Keck, M. K., Cohen, E. E. W., Lingen, M. W., Vokes, E. E., and Seiwert, T. Y. (2014) Validation of two biologically distinct HPV-associated head and neck cancer subtypes and correlation with E5 expression. J. Clin. Oncol. 32 32:5s, 2014 (suppl; abstr 6031)
    • (2014) J. Clin. Oncol. , vol.32
    • Zuo, Z.1    Khattri, A.2    Keck, M.K.3    Cohen, E.E.W.4    Lingen, M.W.5    Vokes, E.E.6    Seiwert, T.Y.7
  • 52
    • 84863084923 scopus 로고    scopus 로고
    • Cortactin in cell migration and cancer at a glance
    • MacGrath, S. M., and Koleske, A. J. (2012) Cortactin in cell migration and cancer at a glance. J. Cell Sci. 125, 1621-1626
    • (2012) J. Cell Sci. , vol.125 , pp. 1621-1626
    • MacGrath, S.M.1    Koleske, A.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.