메뉴 건너뛰기




Volumn 60, Issue 10, 2014, Pages 1314-1326

Integrative bioinformatics analysis reveals new prognostic biomarkers of clear cell renal cell carcinoma

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC HYDROCARBON RECEPTOR; GRAINYHEAD LIKE 2; KIAA0101 PROTEIN; MESSENGER RNA; MICRORNA; PROTEIN; SMALL INTERFERING RNA; UNCLASSIFIED DRUG; CARRIER PROTEIN; DNA BINDING PROTEIN; GRHL2 PROTEIN, HUMAN; KIAA0101 PROTEIN, HUMAN; TRANSCRIPTION FACTOR; TUMOR MARKER;

EID: 84921820539     PISSN: 00099147     EISSN: 15308561     Source Type: Journal    
DOI: 10.1373/clinchem.2014.225854     Document Type: Article
Times cited : (53)

References (41)
  • 1
    • 82955180319 scopus 로고    scopus 로고
    • Renal cell carcinoma
    • Cairns P. Renal cell carcinoma. Cancer Biomark 2010;9:461-73.
    • (2010) Cancer Biomark , vol.9 , pp. 461-473
    • Cairns, P.1
  • 2
    • 84928310911 scopus 로고    scopus 로고
    • Systemic therapy for non-clear cell renal cell carcinomas: A systematic review and meta-analysis
    • [Epub ahead of print 2014 May 29]
    • Vera-Badillo FE, Templeton AJ, Duran I, Ocana A, de Gouveia P, Aneja P, et al. Systemic therapy for non-clear cell renal cell carcinomas: a systematic review and meta-analysis. Eur Urol [Epub ahead of print 2014 May 29].
    • Eur Urol
    • Vera-Badillo, F.E.1    Templeton, A.J.2    Duran, I.3    Ocana, A.4    De Gouveia, P.5    Aneja, P.6
  • 3
    • 84875381361 scopus 로고    scopus 로고
    • Renal tumors with clear cells. A review
    • Lopez JI. Renal tumors with clear cells. A review. Pathol Res Pract 2013;209:137-46.
    • (2013) Pathol Res Pract , vol.209 , pp. 137-146
    • Lopez, J.I.1
  • 5
    • 84880021080 scopus 로고    scopus 로고
    • Clear cell renal cell carcinoma associated microRNA expression signatures identified by an integrated bioinformatics analysis
    • Chen J, Zhang D, Zhang W, Tang Y, Yan W, Guo L, Shen B. Clear cell renal cell carcinoma associated microRNA expression signatures identified by an integrated bioinformatics analysis. J Transl Med 2013;11:169.
    • (2013) J Transl Med , vol.11 , pp. 169
    • Chen, J.1    Zhang, D.2    Zhang, W.3    Tang, Y.4    Yan, W.5    Guo, L.6    Shen, B.7
  • 6
    • 84855393367 scopus 로고    scopus 로고
    • Integrative genomic analyses of sporadic clear cell renal cell carcinoma define disease subtypes and potential new therapeutic targets
    • Dondeti VR, Wubbenhorst B, Lal P, Gordan JD, D'Andrea K, Attiyeh EF, et al. Integrative genomic analyses of sporadic clear cell renal cell carcinoma define disease subtypes and potential new therapeutic targets. Cancer Res 2012;72:112-21.
    • (2012) Cancer Res , vol.72 , pp. 112-121
    • Dondeti, V.R.1    Wubbenhorst, B.2    Lal, P.3    Gordan, J.D.4    D'Andrea, K.5    Attiyeh, E.F.6
  • 8
    • 79958049779 scopus 로고    scopus 로고
    • EPAS1 mRNA in plasma from colorectal cancer patients is associated with poor outcome in advanced stages
    • Mohammed N, Rodriguez M, Garcia V, Garcia JM, Dominguez G, Pena C, et al. EPAS1 mRNA in plasma from colorectal cancer patients is associated with poor outcome in advanced stages. Oncol Lett 2011;2:719-24.
    • (2011) Oncol Lett , vol.2 , pp. 719-724
    • Mohammed, N.1    Rodriguez, M.2    Garcia, V.3    Garcia, J.M.4    Dominguez, G.5    Pena, C.6
  • 9
    • 84875945038 scopus 로고    scopus 로고
    • P15(PAF) is an Rb/E2F-regulated S-phase protein essential for DNA synthesis and cell cycle progression
    • Chang CN, Feng MJ, Chen YL, Yuan RH, Jeng YM. p15(PAF) is an Rb/E2F-regulated S-phase protein essential for DNA synthesis and cell cycle progression. PLoS One 2013;8:e61196.
    • (2013) PLoS One , vol.8 , pp. e61196
    • Chang, C.N.1    Feng, M.J.2    Chen, Y.L.3    Yuan, R.H.4    Jeng, Y.M.5
  • 10
    • 84883651195 scopus 로고    scopus 로고
    • MiR-192, miR-194 and miR-215: A convergent microRNA network suppressing tumor progression in renal cell carcinoma
    • Khella HW, Bakhet M, Allo G, Jewett MA, Girgis AH, Latif A, et al. miR-192, miR-194 and miR-215: a convergent microRNA network suppressing tumor progression in renal cell carcinoma. Carcinogenesis 2013;34:2231-9.
    • (2013) Carcinogenesis , vol.34 , pp. 2231-2239
    • Khella, H.W.1    Bakhet, M.2    Allo, G.3    Jewett, M.A.4    Girgis, A.H.5    Latif, A.6
  • 11
    • 79952674000 scopus 로고    scopus 로고
    • Interactome networks and human disease
    • Vidal M, Cusick ME, Barabasi AL. Interactome networks and human disease. Cell 2011;144:986-98.
    • (2011) Cell , vol.144 , pp. 986-998
    • Vidal, M.1    Cusick, M.E.2    Barabasi, A.L.3
  • 12
    • 69249127529 scopus 로고    scopus 로고
    • Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture
    • Jothi R, Balaji S, Wuster A, Grochow JA, Gsponer J, Przytycka TM, et al. Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 2009;5:294.
    • (2009) Mol Syst Biol , vol.5 , pp. 294
    • Jothi, R.1    Balaji, S.2    Wuster, A.3    Grochow, J.A.4    Gsponer, J.5    Przytycka, T.M.6
  • 13
    • 84866895984 scopus 로고    scopus 로고
    • Control centrality and hierarchical structure in complex networks
    • Liu YY, Slotine JJ, Barabasi AL. Control centrality and hierarchical structure in complex networks. PLoS One 2012;7:e44459.
    • (2012) PLoS One , vol.7 , pp. e44459
    • Liu, Y.Y.1    Slotine, J.J.2    Barabasi, A.L.3
  • 15
    • 64549089259 scopus 로고    scopus 로고
    • Interlaboratory and interplatform comparison of microarray gene expression analysis of HepG2 cells exposed to benzo (a) pyrene
    • Hockley SL, Mathijs K, Staal YC, Brewer D, Gid-dings I, van Delft JH, Phillips DH. Interlaboratory and interplatform comparison of microarray gene expression analysis of HepG2 cells exposed to benzo (a) pyrene. OMICS 2009;13:115-25.
    • (2009) OMICS , vol.13 , pp. 115-125
    • Hockley, S.L.1    Mathijs, K.2    Staal, Y.C.3    Brewer, D.4    Gid-Dings, I.5    Van Delft, J.H.6    Phillips, D.H.7
  • 16
    • 33646369893 scopus 로고    scopus 로고
    • Strategies for comparing gene expression profiles from different mi-croarray platforms: Application to a case-control experiment
    • Severgnini M, Bicciato S, Mangano E, Scarlatti F, Mezzelani A, Mattioli M, et al. Strategies for comparing gene expression profiles from different mi-croarray platforms: application to a case-control experiment. Anal Biochem 2006;353:43-56.
    • (2006) Anal Biochem , vol.353 , pp. 43-56
    • Severgnini, M.1    Bicciato, S.2    Mangano, E.3    Scarlatti, F.4    Mezzelani, A.5    Mattioli, M.6
  • 17
    • 84885306769 scopus 로고    scopus 로고
    • Renal cell carcinoma: Translational aspects of metabolism and therapeutic consequences
    • Yang OC, Maxwell PH, Pollard PJ. Renal cell carcinoma: translational aspects of metabolism and therapeutic consequences. Kidney Int 2013; 84:667-81.
    • (2013) Kidney Int , vol.84 , pp. 667-681
    • Yang, O.C.1    Maxwell, P.H.2    Pollard, P.J.3
  • 18
    • 80855143652 scopus 로고    scopus 로고
    • Silencing of miR-124 induces neu-roblastoma SK-N-SH cell differentiation, cell cycle arrest and apoptosis through promoting AHR
    • Huang TC, Chang HY, Chen CY, Wu PY, Lee H, Liao YF, et al. Silencing of miR-124 induces neu-roblastoma SK-N-SH cell differentiation, cell cycle arrest and apoptosis through promoting AHR. FEBS Lett 2011;585:3582-6.
    • (2011) FEBS Lett , vol.585 , pp. 3582-3586
    • Huang, T.C.1    Chang, H.Y.2    Chen, C.Y.3    Wu, P.Y.4    Lee, H.5    Liao, Y.F.6
  • 20
    • 0032447116 scopus 로고    scopus 로고
    • The aryl hydrocarbon receptor: Studies using the AHR-null mice
    • Gonzalez FJ, Fernandez-Salguero P. The aryl hydrocarbon receptor: studies using the AHR-null mice. Drug Metab Dispos 1998;26:1194-8.
    • (1998) Drug Metab Dispos , vol.26 , pp. 1194-1198
    • Gonzalez, F.J.1    Fernandez-Salguero, P.2
  • 21
    • 78649339242 scopus 로고    scopus 로고
    • An introduction to the molecular basics of aryl hydrocarbon receptor biology
    • Abel J, Haarmann-Stemmann T. An introduction to the molecular basics of aryl hydrocarbon receptor biology. Biol Chem 2010;391:1235-48.
    • (2010) Biol Chem , vol.391 , pp. 1235-1248
    • Abel, J.1    Haarmann-Stemmann, T.2
  • 23
    • 77649215840 scopus 로고    scopus 로고
    • Activation of the aryl hydrocarbon receptor pathway enhances cancer cell invasion by upregulating the MMP expression and is associated with poor prognosis in upper urinary tract urothelial cancer
    • Ishida M, Mikami S, Kikuchi E, Kosaka T, Miyajima A, Nakagawa K, et al. Activation of the aryl hydrocarbon receptor pathway enhances cancer cell invasion by upregulating the MMP expression and is associated with poor prognosis in upper urinary tract urothelial cancer. Carcinogenesis 2010;31:287-95.
    • (2010) Carcinogenesis , vol.31 , pp. 287-295
    • Ishida, M.1    Mikami, S.2    Kikuchi, E.3    Kosaka, T.4    Miyajima, A.5    Nakagawa, K.6
  • 24
    • 84862845975 scopus 로고    scopus 로고
    • Aryl hydrocarbon receptor activation by aminoflavone: New molecular target for renal cancer treatment
    • Callero MA, Suarez GV, Luzzani G, Itkin B, Nguyen B, Loaiza-Perez AI. Aryl hydrocarbon receptor activation by aminoflavone: new molecular target for renal cancer treatment. Int J Oncol 2012;41:125-34.
    • (2012) Int J Oncol , vol.41 , pp. 125-134
    • Callero, M.A.1    Suarez, G.V.2    Luzzani, G.3    Itkin, B.4    Nguyen, B.5    Loaiza-Perez, A.I.6
  • 25
    • 84896717712 scopus 로고    scopus 로고
    • Development of cardiac hypertrophy by sunitinib in vivo and in vitro rat cardiomyocytes is influenced by the aryl hydrocarbon receptor signaling pathway
    • Maayah ZH, Ansari MA, El Gendy MA, Al-Arifi MN, Korashy HM. Development of cardiac hypertrophy by sunitinib in vivo and in vitro rat cardiomyocytes is influenced by the aryl hydrocarbon receptor signaling pathway. Arch Toxicol 2013;88:725-38.
    • (2013) Arch Toxicol , vol.88 , pp. 725-738
    • Zh, M.1    Ansari, M.A.2    El Gendy, M.A.3    Al-Arifi, M.N.4    Korashy, H.M.5
  • 26
    • 33746589415 scopus 로고    scopus 로고
    • Expression of Ets-1 in human clear cell renal cell carcinomas: Implications for angiogen-esis
    • Mikami S, Oya M, Mizuno R, Murai M, Mukai M, Okada Y. Expression of Ets-1 in human clear cell renal cell carcinomas: implications for angiogen-esis. Cancer Sci 2006;97:875-82.
    • (2006) Cancer Sci , vol.97 , pp. 875-882
    • Mikami, S.1    Oya, M.2    Mizuno, R.3    Murai, M.4    Mukai, M.5    Okada, Y.6
  • 27
    • 84885963684 scopus 로고    scopus 로고
    • Epithelial-mesenchymal transition and tumor suppression are controlled by a reciprocal feedback loop between ZEB1 and Grainyhead-like-2
    • Cieply B, Farris J, Denvir J, Ford HL, Frisch SM. Epithelial-mesenchymal transition and tumor suppression are controlled by a reciprocal feedback loop between ZEB1 and Grainyhead-like-2. Cancer Res 2013;73:6299-309.
    • (2013) Cancer Res , vol.73 , pp. 6299-6309
    • Cieply, B.1    Farris, J.2    Denvir, J.3    Ford, H.L.4    Frisch, S.M.5
  • 28
    • 84878356464 scopus 로고    scopus 로고
    • Grainyhead-like 2 (GRHL2) inhibits keratino-cyte differentiation through epigenetic mechanism
    • Chen W, Xiao LZ, Oh JE, Shin KH, Kim RH, Jiang M, et al. Grainyhead-like 2 (GRHL2) inhibits keratino-cyte differentiation through epigenetic mechanism. Cell Death Dis 2012;3:e450.
    • (2012) Cell Death Dis , vol.3 , pp. e450
    • Chen, W.1    Xiao, L.Z.2    Oh, J.E.3    Shin, K.H.4    Kim, R.H.5    Jiang, M.6
  • 29
    • 84871312342 scopus 로고    scopus 로고
    • Grhl2 determines the epithelial phenotype of breast cancers and promotes tumor progression
    • Xiang X, Deng Z, Zhuang X, Ju S, Mu J, Jiang H, et al. Grhl2 determines the epithelial phenotype of breast cancers and promotes tumor progression. PLoS One 2012;7:e50781.
    • (2012) PLoS One , vol.7 , pp. e50781
    • Xiang, X.1    Deng, Z.2    Zhuang, X.3    Ju, S.4    Mu, J.5    Jiang, H.6
  • 30
    • 79959968319 scopus 로고    scopus 로고
    • Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyclosome substrate
    • Emanuele MJ, Ciccia A, Elia AE, Elledge SJ. Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyclosome substrate. Proc Natl Acad Sci USA 2011;108:9845-50.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 9845-9850
    • Emanuele, M.J.1    Ciccia, A.2    Elia, A.E.3    Elledge, S.J.4
  • 31
    • 80855156762 scopus 로고    scopus 로고
    • KIAA0101 is overexpressed, and promotes growth and invasion in adrenal cancer
    • Jain M, Zhang L, Patterson EE, Kebebew E. KIAA0101 is overexpressed, and promotes growth and invasion in adrenal cancer. PLoS One 2011;6:e26866.
    • (2011) PLoS One , vol.6 , pp. e26866
    • Jain, M.1    Zhang, L.2    Patterson, E.E.3    Kebebew, E.4
  • 33
    • 84899078379 scopus 로고    scopus 로고
    • KIAA0101 mRNA overexpression in peripheral blood mononuclear cells acts as predictive marker for hepatic cancer
    • Su X, Zhang T, Cheng P, Zhu Y, Li H, Li D, et al. KIAA0101 mRNA overexpression in peripheral blood mononuclear cells acts as predictive marker for hepatic cancer. Tumour Biol 2013;35:2681-6.
    • (2013) Tumour Biol , vol.35 , pp. 2681-2686
    • Su, X.1    Zhang, T.2    Cheng, P.3    Zhu, Y.4    Li, H.5    Li, D.6
  • 34
    • 48149093106 scopus 로고    scopus 로고
    • MicroRNAs: Regulators of oncogenesis and stemness
    • Papagiannakopoulos T, Kosik KS. MicroRNAs: regulators of oncogenesis and stemness. BMC Med 2008;6:15.
    • (2008) BMC Med , vol.6 , pp. 15
    • Papagiannakopoulos, T.1    Kosik, K.S.2
  • 35
    • 84878214332 scopus 로고    scopus 로고
    • Downregulation of miR-124 promotes the growth and invasiveness of glioblastoma cells involving upregulation of PPP1R13L
    • Zhao WH, Wu SQ, Zhang YD. Downregulation of miR-124 promotes the growth and invasiveness of glioblastoma cells involving upregulation of PPP1R13L. Int J Mol Med 2013;32:101-7.
    • (2013) Int J Mol Med , vol.32 , pp. 101-107
    • Zhao, W.H.1    Wu, S.Q.2    Zhang, Y.D.3
  • 36
    • 77958117982 scopus 로고    scopus 로고
    • MiR-124a is important for migratory cell fate transition during gastrulation of human embryonic stem cells
    • Lee MR, Kim JS, Kim KS. miR-124a is important for migratory cell fate transition during gastrulation of human embryonic stem cells. Stem Cells 2010;28: 1550-9.
    • (2010) Stem Cells , vol.28 , pp. 1550-1559
    • Lee, M.R.1    Kim, J.S.2    Kim, K.S.3
  • 37
    • 84872580192 scopus 로고    scopus 로고
    • Loss of miR-204 expression enhances glioma migration and stem cell-like phenotype
    • Ying Z, Li Y, Wu J, Zhu X, Yang Y, Tian H, et al. Loss of miR-204 expression enhances glioma migration and stem cell-like phenotype. Cancer Res 2013;73:990-9.
    • (2013) Cancer Res , vol.73 , pp. 990-999
    • Ying, Z.1    Li, Y.2    Wu, J.3    Zhu, X.4    Yang, Y.5    Tian, H.6
  • 38
    • 77956809127 scopus 로고    scopus 로고
    • Accurate molecular classification of renal tumors using microRNA expression
    • Fridman E, Dotan Z, Barshack I, David MB, Dov A, Tabak S, et al. Accurate molecular classification of renal tumors using microRNA expression. J Mol Diagn 2010;12:687-96.
    • (2010) J Mol Diagn , vol.12 , pp. 687-696
    • Fridman, E.1    Dotan, Z.2    Barshack, I.3    David, M.B.4    Dov, A.5    Tabak, S.6
  • 39
    • 84862059624 scopus 로고    scopus 로고
    • Identification of a 4-microRNA signature for clear cell renal cell carcinoma metastasis and prognosis
    • Wu X, Weng L, Li X, Guo C, Pal SK, Jin JM, et al. Identification of a 4-microRNA signature for clear cell renal cell carcinoma metastasis and prognosis. PLoS One 2012;7:e35661.
    • (2012) PLoS One , vol.7 , pp. e35661
    • Wu, X.1    Weng, L.2    Li, X.3    Guo, C.4    Pal, S.K.5    Jin, J.M.6
  • 40
    • 81855209828 scopus 로고    scopus 로고
    • HER2 interacts with CD44 to up-regulate CXCR4 via epigenetic silencing of microRNA-139 in gastric cancer cells
    • Bao W, Fu HJ, Xie QS, Wang L, Zhang R, Guo ZY, et al. HER2 interacts with CD44 to up-regulate CXCR4 via epigenetic silencing of microRNA-139 in gastric cancer cells. Gastroenterology 2011;141:2076-87.
    • (2011) Gastroenterology , vol.141 , pp. 2076-2087
    • Bao, W.1    Fu, H.J.2    Xie, Q.S.3    Wang, L.4    Zhang, R.5    Guo, Z.Y.6
  • 41
    • 84878728402 scopus 로고    scopus 로고
    • Derepression of c-Fos caused by microRNA-139 down-regulation contributes to the metastasis of human hepatocellular carcinoma
    • Fan Q, He M, Deng X, Wu WK, Zhao L, Tang J, et al. Derepression of c-Fos caused by microRNA-139 down-regulation contributes to the metastasis of human hepatocellular carcinoma. Cell Biochem Funct 2013;31:319-24.
    • (2013) Cell Biochem Funct , vol.31 , pp. 319-324
    • Fan, Q.1    He, M.2    Deng, X.3    Wu, W.K.4    Zhao, L.5    Tang, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.