메뉴 건너뛰기




Volumn 1262, Issue , 2015, Pages 183-197

RNA antisense purification (RAP) for mapping RNA interactions with chromatin

Author keywords

Chromatin; Hybrid capture; lncRNA; Localization; RNA purification

Indexed keywords

COMPLEMENTARY RNA; DNA FRAGMENT; MESSENGER RNA; RNA; SINGLE STRANDED DNA; CHROMATIN; DNA;

EID: 84921767267     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-4939-2253-6_11     Document Type: Article
Times cited : (73)

References (13)
  • 2
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D et al (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458:223–227
    • (2009) Nature , vol.458 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3    French, C.4    Lin, M.F.5    Feldser, D.6
  • 3
    • 77952148742 scopus 로고    scopus 로고
    • Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multiexonic structure of lincRNAs
    • Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, Adiconis X et al (2010) Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multiexonic structure of lincRNAs. Nat Biotechnol 28:503–510
    • (2010) Nat Biotechnol , vol.28 , pp. 503-510
    • Guttman, M.1    Garber, M.2    Levin, J.Z.3    Donaghey, J.4    Robinson, J.5    Adiconis, X.6
  • 4
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili MN, Trapnell C, GoffL, Koziol M, Tazon-Vega B, Regev A, Rinn JL (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 25: 1915–1927
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-vega, B.5    Regev, A.6    Rinn, J.L.7
  • 5
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    • Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H et al (2012) The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res 22: 1775–1789
    • (2012) Genome Res , vol.22 , pp. 1775-1789
    • Derrien, T.1    Johnson, R.2    Bussotti, G.3    Tanzer, A.4    Djebali, S.5    Tilgner, H.6
  • 6
    • 55349109963 scopus 로고    scopus 로고
    • Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
    • Zhao J, Sun BK, Erwin JA, Song JJ, Lee JT (2008) Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 322:750–756
    • (2008) Science , vol.322 , pp. 750-756
    • Zhao, J.1    Sun, B.K.2    Erwin, J.A.3    Song, J.J.4    Lee, J.T.5
  • 8
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F et al (2010) Long noncoding RNA as modular scaffold of histone modification complexes. Science 329:689–693
    • (2010) Science , vol.329 , pp. 689-693
    • Tsai, M.C.1    Manor, O.2    Wan, Y.3    Mosammaparast, N.4    Wang, J.K.5    Lan, F.6
  • 9
    • 80052869283 scopus 로고    scopus 로고
    • lincRNAs act in the circuitry controlling pluripotency and differentiation
    • Guttman M, Donaghey J, Carey BW, Garber M, Grenier JK, Munson G et al (2011) lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 477:295–300
    • (2011) Nature , vol.477 , pp. 295-300
    • Guttman, M.1    Donaghey, J.2    Carey, B.W.3    Garber, M.4    Grenier, J.K.5    Munson, G.6
  • 10
    • 80054756754 scopus 로고    scopus 로고
    • Genomic maps of long noncoding RNA occupancy reveal principles of RNAchromatin interactions
    • Chu C, Qu K, Zhong FL, Artandi SE, Chang HY (2011) Genomic maps of long noncoding RNA occupancy reveal principles of RNAchromatin interactions. Mol Cell 44:667–678
    • (2011) Mol Cell , vol.44 , pp. 667-678
    • Chu, C.1    Qu, K.2    Zhong, F.L.3    Artandi, S.E.4    Chang, H.Y.5
  • 12
    • 84879642373 scopus 로고    scopus 로고
    • The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome
    • Engreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C et al (2013) The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome. Science 341:1237973
    • (2013) Science , vol.341 , pp. 1237973
    • Engreitz, J.M.1    Pandya-jones, A.2    McDonel, P.3    Shishkin, A.4    Sirokman, K.5    Surka, C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.