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Volumn 53, Issue 2, 2015, Pages 389-397

Ultradeep pyrosequencing of NS3 to predict response to triple therapy with protease inhibitors in previously treated chronic hepatitis C patients

Author keywords

[No Author keywords available]

Indexed keywords

BOCEPREVIR; NONSTRUCTURAL PROTEIN 3; PEGINTERFERON ALPHA; RIBAVIRIN; TELAPREVIR; VIRUS RNA; ANTIVIRUS AGENT; NS3 PROTEIN, HEPATITIS C VIRUS; PROTEINASE INHIBITOR; VIRAL PROTEIN;

EID: 84921758879     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.02547-14     Document Type: Article
Times cited : (6)

References (42)
  • 5
    • 84870413046 scopus 로고    scopus 로고
    • The role of resistance in HCV treatment
    • Vermehren J, Sarrazin C. 2012. The role of resistance in HCV treatment. Best Pract Res Clin Gastroenterol 26:487-503. http://dx.doi.org/10.1016/j.bpg.2012.09.011.
    • (2012) Best Pract Res Clin Gastroenterol , vol.26 , pp. 487-503
    • Vermehren, J.1    Sarrazin, C.2
  • 7
    • 0032475822 scopus 로고    scopus 로고
    • Hepatitis C viral dynamics in vivo and the antiviral efficacy of interferon-alpha therapy
    • Neumann AU, Lam NP, Dahari H, Gretch DR, Wiley TE, Layden TJ, Perelson AS. 1998. Hepatitis C viral dynamics in vivo and the antiviral efficacy of interferon-alpha therapy. Science 282:103-107. http://dx.doi.org/10.1126/science.282.5386.103.
    • (1998) Science , vol.282 , pp. 103-107
    • Neumann, A.U.1    Lam, N.P.2    Dahari, H.3    Gretch, D.R.4    Wiley, T.E.5    Layden, T.J.6    Perelson, A.S.7
  • 8
    • 77950203857 scopus 로고    scopus 로고
    • Viral resistance to specifically targeted antiviral therapies for hepatitis C (STAT-Cs)
    • Kieffer TL, Kwong AD, Picchio GR. 2010. Viral resistance to specifically targeted antiviral therapies for hepatitis C (STAT-Cs). J Antimicrob Chemother 65:202-212. http://dx.doi.org/10.1093/jac/dkp388.
    • (2010) J Antimicrob Chemother , vol.65 , pp. 202-212
    • Kieffer, T.L.1    Kwong, A.D.2    Picchio, G.R.3
  • 9
    • 84855246805 scopus 로고    scopus 로고
    • Future treatment of chronic hepatitis C with direct acting antivirals: Is resistance important?
    • Halfon P, Sarrazin C. 2012. Future treatment of chronic hepatitis C with direct acting antivirals: is resistance important? Liver Int 32(Suppl 1):79-87. http://dx.doi.org/10.1111/j.1478-3231.2011.02716.x.
    • (2012) Liver Int , vol.32 , pp. 79-87
    • Halfon, P.1    Sarrazin, C.2
  • 12
    • 84864303595 scopus 로고    scopus 로고
    • Genotyping and resistance profile of hepatitis C (HCV) genotypes 1-6 by sequencing the NS3 protease region using a single optimized sensitive method
    • Besse B, Coste-Burel M, Bourgeois N, Feray C, Imbert-Marcille BM, Andre-Garnier E. 2012. Genotyping and resistance profile of hepatitis C (HCV) genotypes 1-6 by sequencing the NS3 protease region using a single optimized sensitive method. J Virol Methods 185:94-100. http://dx.doi.org/10.1016/j.jviromet.2012.06.011.
    • (2012) J Virol Methods , vol.185 , pp. 94-100
    • Besse, B.1    Coste-Burel, M.2    Bourgeois, N.3    Feray, C.4    Imbert-Marcille, B.M.5    Andre-Garnier, E.6
  • 17
    • 84866309379 scopus 로고    scopus 로고
    • Abundant drug-resistant NS3 mutants detected by deep sequencing in hepatitis C virus-infected patients undergoing NS3 protease inhibitor monotherapy
    • Svarovskaia ES, Martin R, McHutchison JG, Miller MD, Mo H. 2012. Abundant drug-resistant NS3 mutants detected by deep sequencing in hepatitis C virus-infected patients undergoing NS3 protease inhibitor monotherapy. J Clin Microbiol 50:3267-3274. http://dx.doi.org/10.1128/JCM.00838-12.
    • (2012) J Clin Microbiol , vol.50 , pp. 3267-3274
    • Svarovskaia, E.S.1    Martin, R.2    McHutchison, J.G.3    Miller, M.D.4    Mo, H.5
  • 18
    • 84867097569 scopus 로고    scopus 로고
    • Protease inhibitor-based triple therapyinchronic hepatitisC:guidelinesbythe French Association for the Study of the Liver
    • Leroy V, Serfaty L, Bourliere M, Bronowicki JP, Delasalle P, Pariente A, Pol S, Zoulim F, Pageaux GP. 2012. Protease inhibitor-based triple therapyinchronic hepatitisC:guidelinesbythe French Association for the Study of the Liver. Liver Int 32:1477-1492. http://dx.doi.org/10.1111/j.1478-3231.2012.02856.x.
    • (2012) Liver Int , vol.32 , pp. 1477-1492
    • Leroy, V.1    Serfaty, L.2    Bourliere, M.3    Bronowicki, J.P.4    Delasalle, P.5    Pariente, A.6    Pol, S.7    Zoulim, F.8    Pageaux, G.P.9
  • 19
    • 0242669951 scopus 로고    scopus 로고
    • Determining hepatitis C genotype by analyzing the sequence of the NS5b region
    • Sandres-Sauné K, Deny P, Pasquier C, Thibaut V, Duverlie G, Izopet J. 2003. Determining hepatitis C genotype by analyzing the sequence of the NS5b region. J Virol Methods 109:187-193. http://dx.doi.org/10.1016/S0166-0934(03)00070-3.
    • (2003) J Virol Methods , vol.109 , pp. 187-193
    • Sandres-Sauné, K.1    Deny, P.2    Pasquier, C.3    Thibaut, V.4    Duverlie, G.5    Izopet, J.6
  • 21
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7:improvementsinperformance and usability
    • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7:improvementsinperformance and usability. Mol Biol Evol 30:772-780. http://dx.doi.org/10.1093/molbev/mst010.
    • (2013) Mol Biol Evol , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 27
    • 77952709675 scopus 로고    scopus 로고
    • Hepatitis C virus transmission bottlenecks analyzed by deep sequencing
    • Wang GP, Sherrill-Mix SA, Chang KM, Quince C, Bushman FD. 2010. Hepatitis C virus transmission bottlenecks analyzed by deep sequencing. J Virol 84:6218-6228. http://dx.doi.org/10.1128/JVI.02271-09.
    • (2010) J Virol , vol.84 , pp. 6218-6228
    • Wang, G.P.1    Sherrill-Mix, S.A.2    Chang, K.M.3    Quince, C.4    Bushman, F.D.5
  • 29
    • 13944249457 scopus 로고    scopus 로고
    • Quasispecies heterogeneity within the E1/E2 region as a pretreatment variable during pegylated interferon therapy of chronic hepatitis C virus infection
    • Chambers TJ, Fan X, Droll DA, Hembrador E, Slater T, Nickells MW, Dustin LB, Dibisceglie AM. 2005. Quasispecies heterogeneity within the E1/E2 region as a pretreatment variable during pegylated interferon therapy of chronic hepatitis C virus infection. J Virol 79:3071-3083. http://dx.doi.org/10.1128/JVI.79.5.3071-3083.2005.
    • (2005) J Virol , vol.79 , pp. 3071-3083
    • Chambers, T.J.1    Fan, X.2    Droll, D.A.3    Hembrador, E.4    Slater, T.5    Nickells, M.W.6    Dustin, L.B.7    Dibisceglie, A.M.8
  • 31
    • 84903197643 scopus 로고    scopus 로고
    • Impact of hepatitis C virus heterogeneity on interferon sensitivity: An overview
    • El-Shamy A, Hotta H. 2014. Impact of hepatitis C virus heterogeneity on interferon sensitivity: an overview. World J Gastroenterol 20:7555-7569. http://dx.doi.org/10.3748/wjg.v20.i24.7555.
    • (2014) World J Gastroenterol , vol.20 , pp. 7555-7569
    • El-Shamy, A.1    Hotta, H.2
  • 33
    • 84885294164 scopus 로고    scopus 로고
    • Extent of HCV NS3 protease variability and resistance-associated mutations assessed by next generation sequencing in HCV monoinfected and HIV/HCV coinfected patients
    • Bartolini B, Giombini E, Zaccaro P, Selleri M, Rozera G, Abbate I, Comandini UV, Ippolito G, Solmone M, Capobianchi MR. 2013. Extent of HCV NS3 protease variability and resistance-associated mutations assessed by next generation sequencing in HCV monoinfected and HIV/HCV coinfected patients. Virus Res 177:205-208. http://dx.doi.org/10.1016/j.virusres.2013.08.001.
    • (2013) Virus Res , vol.177 , pp. 205-208
    • Bartolini, B.1    Giombini, E.2    Zaccaro, P.3    Selleri, M.4    Rozera, G.5    Abbate, I.6    Comandini, U.V.7    Ippolito, G.8    Solmone, M.9    Capobianchi, M.R.10
  • 34
    • 84921810516 scopus 로고    scopus 로고
    • Deep-sequencing analysis of the gene encoding the hepatitis C virus nonstructural 3-4A protease confirms a low prevalence of telaprevir-resistant variants at baseline and the end of the REALIZE Study
    • Dierynck I, Thys K, Ghys A, Sullivan JC, Kieffer TL, Aerssens J, Picchio G, De Meyer S. 2014. Deep-sequencing analysis of the gene encoding the hepatitis C virus nonstructural 3-4A protease confirms a low prevalence of telaprevir-resistant variants at baseline and the end of the REALIZE Study. J Infect Dis 210:1871-1880. http://dx.doi.org/10.1093/infdis/jiu340.
    • (2014) J Infect Dis , vol.210 , pp. 1871-1880
    • Dierynck, I.1    Thys, K.2    Ghys, A.3    Sullivan, J.C.4    Kieffer, T.L.5    Aerssens, J.6    Picchio, G.7    De Meyer, S.8
  • 35
    • 79955103901 scopus 로고    scopus 로고
    • Treatment failure and resistance with direct-acting antiviral drugs against hepatitis C virus
    • Pawlotsky JM. 2011. Treatment failure and resistance with direct-acting antiviral drugs against hepatitis C virus. Hepatology 53:1742-1751. http://dx.doi.org/10.1002/hep.24262.
    • (2011) Hepatology , vol.53 , pp. 1742-1751
    • Pawlotsky, J.M.1
  • 36
    • 34547927078 scopus 로고    scopus 로고
    • Phenotypic and structural analyses of hepatitis C virus NS3 protease Arg155 variants: Sensitivity to telaprevir (VX-950) and interferon alpha
    • Zhou Y, Muh U, Hanzelka BL, Bartels DJ, Wei Y, Rao BG, Brennan DL, Tigges AM, Swenson L, Kwong AD, Lin C. 2007. Phenotypic and structural analyses of hepatitis C virus NS3 protease Arg155 variants: sensitivity to telaprevir (VX-950) and interferon alpha. J Biol Chem 282:22619-22628. http://dx.doi.org/10.1074/jbc.M610207200.
    • (2007) J Biol Chem , vol.282 , pp. 22619-22628
    • Zhou, Y.1    Muh, U.2    Hanzelka, B.L.3    Bartels, D.J.4    Wei, Y.5    Rao, B.G.6    Brennan, D.L.7    Tigges, A.M.8    Swenson, L.9    Kwong, A.D.10    Lin, C.11
  • 38
    • 84874420360 scopus 로고    scopus 로고
    • NS3 genetic variability in HCV genotype-1b isolates from liver specimens and blood samples of treatment-naive patients with chronic hepatitis C
    • Maimone S, Musolino C, Squadrito G, Raffa G, Pollicino T, Raimondo G. 2013. NS3 genetic variability in HCV genotype-1b isolates from liver specimens and blood samples of treatment-naive patients with chronic hepatitis C. Antivir Ther 18:131-134. http://dx.doi.org/10.3851/IMP2326.
    • (2013) Antivir Ther , vol.18 , pp. 131-134
    • Maimone, S.1    Musolino, C.2    Squadrito, G.3    Raffa, G.4    Pollicino, T.5    Raimondo, G.6
  • 40
    • 18144379843 scopus 로고    scopus 로고
    • Compartmentalization of hepatitis C virus genotypes between plasma and peripheral blood mononuclear cells
    • Roque-Afonso AM, Ducoulombier D, Di Liberto G, Kara R, Gigou M, Dussaix E, Samuel D, Feray C. 2005. Compartmentalization of hepatitis C virus genotypes between plasma and peripheral blood mononuclear cells. J Virol 79:6349-6357. http://dx.doi.org/10.1128/JVI.79.10.6349-6357.2005.
    • (2005) J Virol , vol.79 , pp. 6349-6357
    • Roque-Afonso, A.M.1    Ducoulombier, D.2    Di Liberto, G.3    Kara, R.4    Gigou, M.5    Dussaix, E.6    Samuel, D.7    Feray, C.8
  • 41
    • 68949197614 scopus 로고    scopus 로고
    • Hepatitis C virus quasispecies in plasma and peripheral blood mononuclear cells of treatment naive chronically infected patients
    • Vera-Otarola J, Barria MI, Leon U, Marsac D, Carvallo P, Soza A, Lopez-Lastra M. 2009. Hepatitis C virus quasispecies in plasma and peripheral blood mononuclear cells of treatment naive chronically infected patients. JViral Hepat 16:633-643. http://dx.doi.org/10.1111/j.1365-2893.2009.01112.x.
    • (2009) JViral Hepat , vol.16 , pp. 633-643
    • Vera-Otarola, J.1    Barria, M.I.2    Leon, U.3    Marsac, D.4    Carvallo, P.5    Soza, A.6    Lopez-Lastra, M.7
  • 42
    • 84904991493 scopus 로고    scopus 로고
    • European Association for the Study of Liver. 2014. EASL recommendations on treatment of hepatitis C 2014. http://www.easl.eu/-newsroom/latest-news/easl-recommendations-on-treatment-of-hepatitis-c-2014.
    • (2014) EASL Recommendations on Treatment of Hepatitis C 2014


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