메뉴 건너뛰기




Volumn 82, Issue , 2015, Pages 87-98

Biogeography and biophysicochemical traits link N2O emissions, N2O emission potential and microbial communities across New Zealand pasture soils

Author keywords

16S rRNA; Biogeography; Denitrification; Functional genes; Greenhouse gases; Nitrous oxide

Indexed keywords

CHEMICAL ANALYSIS; CHROMATOGRAPHY; DENITRIFICATION; ECOLOGY; GAS CHROMATOGRAPHY; GAS EMISSIONS; GENES; GREENHOUSE GASES; MICROORGANISMS; NITROGEN OXIDES; POLYMERASE CHAIN REACTION; RNA; TEXTURES;

EID: 84921029571     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2014.12.018     Document Type: Article
Times cited : (35)

References (67)
  • 4
    • 84876127194 scopus 로고    scopus 로고
    • Temperature response of denitrification rate and greenhouse gas production in agricultural river marginal wetland soils
    • Bonnett S.A.F., Blackwell M.S.A., Leah R., Cook V., O'Connor M., Maltby E. Temperature response of denitrification rate and greenhouse gas production in agricultural river marginal wetland soils. Geobiology 2013, 11:252-267. 10.1111/gbi.12032.
    • (2013) Geobiology , vol.11 , pp. 252-267
    • Bonnett, S.A.F.1    Blackwell, M.S.A.2    Leah, R.3    Cook, V.4    O'Connor, M.5    Maltby, E.6
  • 5
    • 84855290081 scopus 로고    scopus 로고
    • Genetic characterization of denitrifier communities with contrasting intrinsic functional traits
    • Braker G., Dorsch P., Bakken L.R. Genetic characterization of denitrifier communities with contrasting intrinsic functional traits. FEMS Microbiology Ecology 2012, 79:542-554. 10.1111/j.1574-6941.2011.01237.x.
    • (2012) FEMS Microbiology Ecology , vol.79 , pp. 542-554
    • Braker, G.1    Dorsch, P.2    Bakken, L.R.3
  • 9
    • 0035117250 scopus 로고    scopus 로고
    • Role of denitrifier diversity in rates of nitrous oxide consumption in a terrestrial ecosystem
    • Cavigelli M.A., Robertson G.P. Role of denitrifier diversity in rates of nitrous oxide consumption in a terrestrial ecosystem. Soil Biology & Biochemistry 2001, 33:297-310.
    • (2001) Soil Biology & Biochemistry , vol.33 , pp. 297-310
    • Cavigelli, M.A.1    Robertson, G.P.2
  • 11
    • 79954630546 scopus 로고    scopus 로고
    • Proximal and distal control by pH of denitrification rate in a pasture soil
    • Čuhel J., Šimek M. Proximal and distal control by pH of denitrification rate in a pasture soil. Agriculture, Ecosystems & Environment 2011, 141:230-233. 10.1016/j.agee.2011.02.016.
    • (2011) Agriculture, Ecosystems & Environment , vol.141 , pp. 230-233
    • Čuhel, J.1    Šimek, M.2
  • 13
    • 0033860832 scopus 로고    scopus 로고
    • RpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity
    • Dahllof I., Baillie H., Kjelleberg S. rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Applied and Environmental Microbiology 2000, 66:3376-3380.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 3376-3380
    • Dahllof, I.1    Baillie, H.2    Kjelleberg, S.3
  • 14
    • 79960839972 scopus 로고    scopus 로고
    • Abundance, diversity and functional gene expression of denitrifier communities in adjacent riparian and agricultural zones
    • Dandie C.E., Wertz S., Leclair C.L., Goyer C., Burton D.L., Patten C.L., Zebarth B.J., Trevors J.T. Abundance, diversity and functional gene expression of denitrifier communities in adjacent riparian and agricultural zones. FEMS Microbiology Ecology 2011, 77:69-82. 10.1111/j.1574-6941.2011.01084.x.
    • (2011) FEMS Microbiology Ecology , vol.77 , pp. 69-82
    • Dandie, C.E.1    Wertz, S.2    Leclair, C.L.3    Goyer, C.4    Burton, D.L.5    Patten, C.L.6    Zebarth, B.J.7    Trevors, J.T.8
  • 15
    • 0035193551 scopus 로고    scopus 로고
    • Nitrous oxide emissions from agricultural soils in New Zealand-a review of current knowledge and directions for future research
    • de Klein C.A.M., Sherlock R.R., Cameron K.C., van der Weerden T.J. Nitrous oxide emissions from agricultural soils in New Zealand-a review of current knowledge and directions for future research. Journal of the Royal Society of New Zealand 2001, 31:543-574. 10.1080/03014223.2001.9517667.
    • (2001) Journal of the Royal Society of New Zealand , vol.31 , pp. 543-574
    • de Klein, C.A.M.1    Sherlock, R.R.2    Cameron, K.C.3    van der Weerden, T.J.4
  • 16
    • 84893385951 scopus 로고    scopus 로고
    • Denitrifier community size, structure and activity along a gradient of pasture to riparian soils
    • Deslippe J.R., Jamali H., Jha N., Saggar S. Denitrifier community size, structure and activity along a gradient of pasture to riparian soils. Soil Biology and Biochemistry 2014, 71:48-60.
    • (2014) Soil Biology and Biochemistry , vol.71 , pp. 48-60
    • Deslippe, J.R.1    Jamali, H.2    Jha, N.3    Saggar, S.4
  • 17
    • 0018084242 scopus 로고
    • An improved hydrazine reduction method for the automated determination of low nitrate levels in freshwater
    • Downes M.T. An improved hydrazine reduction method for the automated determination of low nitrate levels in freshwater. Water Research 1978, 12:673-675.
    • (1978) Water Research , vol.12 , pp. 673-675
    • Downes, M.T.1
  • 18
    • 84855258322 scopus 로고    scopus 로고
    • Community-specific pH response of denitrification: experiments with cells extracted from organic soils
    • Dörsch P., Braker G., Bakken L.R. Community-specific pH response of denitrification: experiments with cells extracted from organic soils. FEMS Microbiology Ecology 2012, 79:530-541. 10.1111/j.1574-6941.2011.01233.x.
    • (2012) FEMS Microbiology Ecology , vol.79 , pp. 530-541
    • Dörsch, P.1    Braker, G.2    Bakken, L.R.3
  • 19
    • 77950263969 scopus 로고    scopus 로고
    • Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management
    • Enwall K., Throbäck I.N., Stenberg M., Soderstrom M., Hallin S. Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management. Applied and Environmental Microbiology 2010, 76:2243-2250. 10.1128/AEM.02197-09.
    • (2010) Applied and Environmental Microbiology , vol.76 , pp. 2243-2250
    • Enwall, K.1    Throbäck, I.N.2    Stenberg, M.3    Soderstrom, M.4    Hallin, S.5
  • 21
    • 0021585458 scopus 로고
    • Nitrous-oxide production in aerobic soils under varying pH, temperature and water-content
    • Goodroad L.L., Keeney D.R. Nitrous-oxide production in aerobic soils under varying pH, temperature and water-content. Soil Biology and Biochemistry 1984, 16:39-43.
    • (1984) Soil Biology and Biochemistry , vol.16 , pp. 39-43
    • Goodroad, L.L.1    Keeney, D.R.2
  • 22
    • 0001003342 scopus 로고
    • Ecology of nitrification and denitrification in soil evaluated at scales relevant to atmospheric chemistry
    • American Society of Microbiology, Washington, DC (USA), J.E. Rogers, W.B. Whitman (Eds.)
    • Groffman P. Ecology of nitrification and denitrification in soil evaluated at scales relevant to atmospheric chemistry. Microbial Production and Consumption of Greenhouse Gases: Methane, Nitrogen Oxides and Halomethanes 1991, 201-217. American Society of Microbiology, Washington, DC (USA). J.E. Rogers, W.B. Whitman (Eds.).
    • (1991) Microbial Production and Consumption of Greenhouse Gases: Methane, Nitrogen Oxides and Halomethanes , pp. 201-217
    • Groffman, P.1
  • 24
    • 33747335398 scopus 로고    scopus 로고
    • Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils
    • Henry S., Bru D., Stres B., Hallet S., Philippot L. Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils. Applied and Environmental Microbiology 2006, 72:5181-5189. 10.1128/AEM.00231-06.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 5181-5189
    • Henry, S.1    Bru, D.2    Stres, B.3    Hallet, S.4    Philippot, L.5
  • 25
    • 0000739726 scopus 로고
    • The effects of biocidal treatments on metabolism in soil-I. Fumigation with chloroform
    • Jenkinson D.S., Powlson D.S. The effects of biocidal treatments on metabolism in soil-I. Fumigation with chloroform. Soil Biology and Biochemistry 1976, 8:167-177.
    • (1976) Soil Biology and Biochemistry , vol.8 , pp. 167-177
    • Jenkinson, D.S.1    Powlson, D.S.2
  • 26
    • 84872967050 scopus 로고    scopus 로고
    • The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink
    • Jones C.M., Graf D.R.H., Bru D., Philippot L., Hallin S. The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink. The ISME Journal 2013, 7:417-426. 10.1038/ismej.2012.125.
    • (2013) The ISME Journal , vol.7 , pp. 417-426
    • Jones, C.M.1    Graf, D.R.H.2    Bru, D.3    Philippot, L.4    Hallin, S.5
  • 29
    • 1242318042 scopus 로고    scopus 로고
    • Evidence for fungal dominance of denitrification and codenitrification in a grassland soil
    • Laughlin R.J., Stevens R.J. Evidence for fungal dominance of denitrification and codenitrification in a grassland soil. Soil Science Society of America Journal 2002, 66:1540. 10.2136/sssaj2002.1540.
    • (2002) Soil Science Society of America Journal , vol.66 , pp. 1540
    • Laughlin, R.J.1    Stevens, R.J.2
  • 30
    • 84905049149 scopus 로고    scopus 로고
    • Fine-scale spatial patterns in bacterial community composition and function within freshwater ponds
    • Lear G., Bellamy J., Case B.S., Lee J.E., Buckley H.L. Fine-scale spatial patterns in bacterial community composition and function within freshwater ponds. The ISME Journal 2014, 8:1715-1726. 10.1038/ismej.2014.21.
    • (2014) The ISME Journal , vol.8 , pp. 1715-1726
    • Lear, G.1    Bellamy, J.2    Case, B.S.3    Lee, J.E.4    Buckley, H.L.5
  • 32
    • 84903976204 scopus 로고    scopus 로고
    • 2 in acid soils is due to a posttranscriptional interference with the expression of nosZ
    • 2 in acid soils is due to a posttranscriptional interference with the expression of nosZ. mBio 2014, 5:e01383-14. 10.1128/mBio.01383-14.
    • (2014) mBio , vol.5 , pp. e01383-e01384
    • Liu, B.1    Frostegård, Å.2    Bakken, L.R.3
  • 33
    • 84885184182 scopus 로고    scopus 로고
    • Strains in the genus Thauera exhibit remarkably different denitrification regulatory phenotypes
    • Liu B., Mao Y., Bergaust L., Bakken L.R., Frostegård Å. Strains in the genus Thauera exhibit remarkably different denitrification regulatory phenotypes. Environmental Microbiology 2013, 15:2816-2828. 10.1111/1462-2920.12142.
    • (2013) Environmental Microbiology , vol.15 , pp. 2816-2828
    • Liu, B.1    Mao, Y.2    Bergaust, L.3    Bakken, L.R.4    Frostegård, Å.5
  • 34
  • 35
    • 0032892798 scopus 로고    scopus 로고
    • Factors regulating denitrification in a soil under pasture
    • Luo J., Tillman R.W., Ball P.R. Factors regulating denitrification in a soil under pasture. Soil Biology and Biochemistry 1999, 31:913-927.
    • (1999) Soil Biology and Biochemistry , vol.31 , pp. 913-927
    • Luo, J.1    Tillman, R.W.2    Ball, P.R.3
  • 36
    • 84907877119 scopus 로고    scopus 로고
    • The nitrate-ammonifying and nosZ-carrying bacterium Bacillus vireti is a potent source and sink for nitric and nitrous oxide under high nitrate conditions
    • Mania D., Heylen K., van Spanning R.J.M., Frostegård Å. The nitrate-ammonifying and nosZ-carrying bacterium Bacillus vireti is a potent source and sink for nitric and nitrous oxide under high nitrate conditions. Environmental Microbiology 2014, 10.1111/1462-2920.12478.
    • (2014) Environmental Microbiology
    • Mania, D.1    Heylen, K.2    van Spanning, R.J.M.3    Frostegård, Å.4
  • 37
    • 0000065717 scopus 로고
    • Dynamics of soil denitrifier populations: relationships between enzyme activity, most-probable-number counts, and actual n gas loss
    • Martin K., Parsons L.L., Murray R.E., Smith M.S. Dynamics of soil denitrifier populations: relationships between enzyme activity, most-probable-number counts, and actual n gas loss. Applied and Environmental Microbiology 1988, 54:2711-2716.
    • (1988) Applied and Environmental Microbiology , vol.54 , pp. 2711-2716
    • Martin, K.1    Parsons, L.L.2    Murray, R.E.3    Smith, M.S.4
  • 40
    • 34247898040 scopus 로고
    • Amodified single solution method for the determination of phosphate in natural waters
    • Murphy J., Riley J.P. Amodified single solution method for the determination of phosphate in natural waters. Analytica Chimica Acta 1962, 27:31-36. 10.1016/S0003-2670(00)88444-5.
    • (1962) Analytica Chimica Acta , vol.27 , pp. 31-36
    • Murphy, J.1    Riley, J.P.2
  • 42
    • 85084940845 scopus 로고    scopus 로고
    • Total carbon, organic carbon, and organic matter
    • Soil Science Society of America Inc.
    • Nelson D.W., Sommers L.E. Total carbon, organic carbon, and organic matter. Methods of Soil Analysis. Part 3-Chemical Methods 1996, 961-1010. Soil Science Society of America Inc.
    • (1996) Methods of Soil Analysis. Part 3-Chemical Methods , pp. 961-1010
    • Nelson, D.W.1    Sommers, L.E.2
  • 43
    • 84921042493 scopus 로고    scopus 로고
    • New Zealand's Greenhouse Gas Inventory 1990-2011 (No. ME 1113).
    • New Zealand Government, M.F.T.E., 2013. New Zealand's Greenhouse Gas Inventory 1990-2011 (No. ME 1113).
    • (2013)
  • 47
    • 1542349775 scopus 로고    scopus 로고
    • The intermediate disturbance hypothesis: patch dynamics and mechanisms of species coexistence
    • Roxburgh S.H., Shea K., Wilson J.B. The intermediate disturbance hypothesis: patch dynamics and mechanisms of species coexistence. Ecology 2004, 85:359-371. 10.1890/03-0266.
    • (2004) Ecology , vol.85 , pp. 359-371
    • Roxburgh, S.H.1    Shea, K.2    Wilson, J.B.3
  • 51
    • 84884491419 scopus 로고    scopus 로고
    • Global modeling of soil nitrous oxide emissions from natural processes
    • Saikawa E., Schlosser C.A., Prinn R.G. Global modeling of soil nitrous oxide emissions from natural processes. Global Biogeochemical Cycles 2013, 27:972-989. 10.1002/gbc.20087.
    • (2013) Global Biogeochemical Cycles , vol.27 , pp. 972-989
    • Saikawa, E.1    Schlosser, C.A.2    Prinn, R.G.3
  • 53
    • 84655161928 scopus 로고    scopus 로고
    • N2O emission and the N2O/(N2O+ N-2) product ratio of denitrification as controlled by available carbon substrates and nitrate concentrations
    • Senbayram M., Chen R., Budai A., Bakken L., Dittert K. N2O emission and the N2O/(N2O+ N-2) product ratio of denitrification as controlled by available carbon substrates and nitrate concentrations. Agriculture, Ecosystems & Environment 2012, 147:4-12. 10.1016/j.agee.2011.06.022.
    • (2012) Agriculture, Ecosystems & Environment , vol.147 , pp. 4-12
    • Senbayram, M.1    Chen, R.2    Budai, A.3    Bakken, L.4    Dittert, K.5
  • 55
    • 80051672008 scopus 로고    scopus 로고
    • 2 due to codenitrification: first review of a barely considered process of microbially mediated N-nitrosation
    • 2 due to codenitrification: first review of a barely considered process of microbially mediated N-nitrosation. Soil Biology and Biochemistry 2011, 43:1995-2011.
    • (2011) Soil Biology and Biochemistry , vol.43 , pp. 1995-2011
    • Spott, O.1    Russow, R.2    Stange, C.F.3
  • 56
    • 84884154552 scopus 로고    scopus 로고
    • Dryland soil microbial communities display spatial biogeographic patterns associated with soil depth and soil parent material
    • Steven B., Gallegos-Graves L.V., Belnap J., Kuske C.R. Dryland soil microbial communities display spatial biogeographic patterns associated with soil depth and soil parent material. FEMS Microbiology Ecology 2013, 86:101-113. 10.1111/1574-6941.12143.
    • (2013) FEMS Microbiology Ecology , vol.86 , pp. 101-113
    • Steven, B.1    Gallegos-Graves, L.V.2    Belnap, J.3    Kuske, C.R.4
  • 59
    • 0002137823 scopus 로고
    • Ecology of denitrification and dissimilatory nitrate reduction to ammonium
    • Wiley & Sons, New York, A.J.B. Zehnder (Ed.)
    • Tiedje J.M. Ecology of denitrification and dissimilatory nitrate reduction to ammonium. Biology of Anaerobic Microorganisms 1988, 179-244. Wiley & Sons, New York. A.J.B. Zehnder (Ed.).
    • (1988) Biology of Anaerobic Microorganisms , pp. 179-244
    • Tiedje, J.M.1
  • 60
    • 0001197512 scopus 로고
    • Perspectives on measurement of denitrification in the field including recommended protocols for acetylene based methods
    • Tiedje J.M., Simkins S., Groffman P.M. Perspectives on measurement of denitrification in the field including recommended protocols for acetylene based methods. Plant and Soil 1989, 115:261-284.
    • (1989) Plant and Soil , vol.115 , pp. 261-284
    • Tiedje, J.M.1    Simkins, S.2    Groffman, P.M.3
  • 64
    • 33845492873 scopus 로고    scopus 로고
    • Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods
    • Wallenstein M.D., Myrold D.D., Firestone M., Voytek M. Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods. Ecological Applications 2006, 16:2143-2152.
    • (2006) Ecological Applications , vol.16 , pp. 2143-2152
    • Wallenstein, M.D.1    Myrold, D.D.2    Firestone, M.3    Voytek, M.4
  • 65
    • 0033501605 scopus 로고    scopus 로고
    • Influence of nitrate and phosphorus loading on denitrifying enzyme activity in Everglades wetland soils
    • White J.R., Reddy K.R. Influence of nitrate and phosphorus loading on denitrifying enzyme activity in Everglades wetland soils. Soil Science Society of America Journal 1999, 63:1945-1954.
    • (1999) Soil Science Society of America Journal , vol.63 , pp. 1945-1954
    • White, J.R.1    Reddy, K.R.2
  • 67
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft W.G. Cell biology and molecular basis of denitrification. Microbiology and Molecular Biology Reviews 1997, 61:533-616.
    • (1997) Microbiology and Molecular Biology Reviews , vol.61 , pp. 533-616
    • Zumft, W.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.