-
1
-
-
36348990139
-
Frontiers of biomedical text mining: Current progress
-
(2007)
-
Zweigenbaum, P., Demner-Fushman, D., Yu, H. and Cohen, K. B. 2007. Frontiers of biomedical text mining: current progress. Briefings in Bioinformatics 8, 5(2007), 358.DOI= http://dx.doi.org/10.1093/bib/bbm045.
-
(2007)
Briefings in Bioinformatics
, vol.8
, Issue.5
, pp. 358
-
-
Zweigenbaum, P.1
Demner-Fushman, D.2
Yu, H.3
Cohen, K.B.4
-
2
-
-
51049090818
-
Concept recognition for extracting protein interaction relations from biomedical text
-
(2008)
-
Baumgartner Jr, W. A., Lu, Z., Johnson, H. L., Caporaso, J. G., Paquette, J., Lindemann, A., White, E. K., Medvedeva, O., Cohen, K. B. and Hunter, L. 2008. Concept recognition for extracting protein interaction relations from biomedical text. Genome biology 9, Suppl 2(2008), S9.DOI= http://dx.doi.org/0.1186/gb-2008-9-s2-s9.
-
(2008)
Genome Biology
, vol.9
, pp. S9
-
-
Baumgartner, W.A.1
Lu, Z.2
Johnson, H.L.3
Caporaso, J.G.4
Paquette, J.5
Lindemann, A.6
White, E.K.7
Medvedeva, O.8
Cohen, K.B.9
Hunter, L.10
-
3
-
-
80053423937
-
The protein-protein interaction tasks of bio creative iii: Classification/ranking of articles and linking bio-ontology concepts to full text
-
Krallinger, M., Vazquez, M., Leitner, F., Salgado, D., Chatr-aryamontri, A., Winter, A., Perfetto, L., Briganti, L., Licata, L. and Iannuccelli, M. 2011. The Protein-Protein Interaction tasks of Bio Creative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC bioinformatics 12, Suppl 8(2011), S3.DOI= http://dx.doi.org/10.1186/1471-2105-12-S8-S3.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S3
-
-
Krallinger, M.1
Vazquez, M.2
Leitner, F.3
Salgado, D.4
Chatr-Aryamontri, A.5
Winter, A.6
Perfetto, L.7
Briganti, L.8
Licata, L.9
Iannuccelli, M.10
-
4
-
-
83055180631
-
Joint inference for knowledge extraction from biomedical literature
-
(Los Angeles, CA, USA, June 1-6, 2010). NAACL HLT 2010
-
Poon, H. and Vanderwende, L. 2010 Joint inference for knowledge extraction from biomedical literature. In Proceedings of the Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics (Los Angeles, CA, USA, June 1-6, 2010). NAACL HLT 2010.
-
(2010)
Proceedings of the Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics
-
-
Poon, H.1
Van Der Wende, L.2
-
5
-
-
41349107398
-
Opendmap: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression
-
Hunter, L., Lu, Z., Firby, J., Baumgartner, W. A., Johnson, H. L., Ogren, P. V. and Cohen, K. B. 2008. OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC bioinformatics 9, 1(2008), 78.DOI= http://dx.doi.org/10.1186/1471-2105-9-78.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 78
-
-
Hunter, L.1
Lu, Z.2
Firby, J.3
Baumgartner, W.A.4
Johnson, H.L.5
Ogren, P.V.6
Cohen, K.B.7
-
6
-
-
47749117601
-
Semantic role labeling for protein transport predicates
-
2008
-
Bethard, S., Lu, Z., Martin, J. H. and Hunter, L. 2008. Semantic role labeling for protein transport predicates. BMC bioinformatics 9, 1(2008), 277.DOI= http://dx.doi.org/10.1186/1471-2105-9-277.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 277
-
-
Bethard, S.1
Lu, Z.2
Martin, J.H.3
Hunter, L.4
-
7
-
-
84899048828
-
Post marketing drug safety surveillance using publicly available health- consumer-contributed content in social media
-
2014
-
Yang, C. C., Yang, H. and Jiang, L. 2014. Postmarketing Drug Safety Surveillance Using Publicly Available Health- Consumer-Contributed Content in Social Media. ACM Transactions on Management Information Systems (TMIS) 5, 1(2014), 2.DOI= http://dx.doi.org/10.1145/2576233.
-
(2014)
ACM Transactions on Management Information Systems (TMIS)
, vol.5
, Issue.1
, pp. 2
-
-
Yang, C.C.1
Yang, H.2
Jiang, L.3
-
8
-
-
79958124672
-
A context-blocks model for identifying clinical relationships in patient records
-
2011
-
Dogan, R. I., Névéol, A. and Lu, Z. 2011. A context-blocks model for identifying clinical relationships in patient records. BMC bioinformatics 12, Suppl 3(2011), S3.DOI= http://dx.doi.org/10.1186/1471-2105-12-S3-S3.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S3
-
-
Dogan, R.I.1
Névéol, A.2
Lu, Z.3
-
9
-
-
84865961913
-
Systematic identification of pharmacogenomics information from clinical trials
-
2012
-
Li, J. and Lu, Z. 2012. Systematic identification of pharmacogenomics information from clinical trials. Journal of Biomedical Informatics 45, 5(2012), 870-878.DOI= http://dx.doi.org/10.1016/j.jbi.2012.04.005.
-
(2012)
Journal of Biomedical Informatics
, vol.45
, Issue.5
, pp. 870-878
-
-
Li, J.1
Lu, Z.2
-
10
-
-
84895729666
-
The gene ontology task at biocreative IV
-
Bethesda, Maryland, USA, October 7-9, 2013. BioCreative IV
-
Mao, Y., Van Auken, K., Li, D., Arighi, C. N. and Lu, Z. 2013 The gene ontology task at biocreative IV. In Proceedings of the Proceedings of the fourth BioCreative challenge evaluation workshop (Bethesda, Maryland, USA, October 7-9, 2013). BioCreative IV.
-
(2013)
Proceedings of the Proceedings of the Fourth BioCreative Challenge Evaluation Workshop
-
-
Mao, Y.1
Van Auken, K.2
Li, D.3
Arighi, C.N.4
Lu, Z.5
-
11
-
-
33845442570
-
Evaluation of biocreative assessment of task 2
-
2005
-
Blaschke, C., Leon, E. A., Krallinger, M. and Valencia, A. 2005. Evaluation of BioCreAtIvE assessment of task 2. BMC bioinformatics 6, Suppl 1(2005), S16.DOI= http://dx.doi.org/10.1186/1471-2105-6-S1-S16.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S16
-
-
Blaschke, C.1
Leon, E.A.2
Krallinger, M.3
Valencia, A.4
-
12
-
-
41349103793
-
Overview of biocreative ii gene normalization
-
2008
-
Morgan, A. A., Lu, Z., Wang, X., Cohen, A. M., Fluck, J., Ruch, P., Divoli, A., Fundel, K., Leaman, R. and Hakenberg, J. 2008. Overview of BioCreative II gene normalization. Genome biology 9, Suppl 2(2008), S3.DOI= http://dx.doi.org/10.1186/gb-2008-9-s2-s3.
-
(2008)
Genome Biology
, Issue.9
, pp. S3
-
-
Morgan, A.A.1
Lu, Z.2
Wang, X.3
Cohen, A.M.4
Fluck, J.5
Ruch, P.6
Divoli, A.7
Fundel, K.8
Leaman, R.9
Hakenberg, J.10
-
13
-
-
84987617568
-
Biocreative-iv virtual issue
-
bau039
-
Arighi, C. N., Wu, C. H., Cohen, K. B., Hirschman, L., Krallinger, M., Valencia, A., Lu, Z., Wilbur, J. W. and Wiegers, T. C. 2014. BioCreative-IV virtual issue. Database 2014 2014), bau039.DOI= http://dx.doi.org/10.1093/database/bau039.
-
(2014)
Database 2014
, vol.2014
-
-
Arighi, C.N.1
Wu, C.H.2
Cohen, K.B.3
Hirschman, L.4
Krallinger, M.5
Valencia, A.6
Lu, Z.7
Wilbur, J.W.8
Wiegers, T.C.9
-
14
-
-
80052774027
-
The gene normalization task in biocreative III
-
2011
-
Lu, Z., Kao, H.-Y., Wei, C.-H., Huang, M., Liu, J., Kuo, C.-J., Hsu, C.-N., Tsai, R. T., Dai, H.-J. and Okazaki, N. 2011. The gene normalization task in BioCreative III. BMC bioinformatics 12, Suppl 8(2011), S2.DOI= http://dx.doi.org/10.1186/1471-2105-12-S8-S2.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S2
-
-
Lu, Z.1
Kao, H.-Y.2
Wei, C.-H.3
Huang, M.4
Liu, J.5
Kuo, C.-J.6
Hsu, C.-N.7
Tsai, R.T.8
Dai, H.-J.9
Okazaki, N.10
-
15
-
-
80053414432
-
Overview of the biocreative iii workshop
-
2011
-
Arighi, C. N., Lu, Z., Krallinger, M., Cohen, K. B., Wilbur, W. J., Valencia, A., Hirschman, L. and Wu, C. H. 2011. Overview of the BioCreative III workshop. BMC bioinformatics 12, Suppl 8(2011), S1.DOI= http://dx.doi.org/10.1186/1471-2105-12-S8-S1.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S1
-
-
Arighi, C.N.1
Lu, Z.2
Krallinger, M.3
Cohen, K.B.4
Wilbur, W.J.5
Valencia, A.6
Hirschman, L.7
Wu, C.H.8
-
16
-
-
84949743313
-
Assessment of ner solutions against the first and second calbc silver standard corpus
-
2011
-
Rebholz-Schuhmann, D., Yepes, A. J., Li, C., Kafkas, S., Lewin, I., Kang, N., Corbett, P., Milward, D., Buyko, E. and Beisswanger, E. 2011. Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. Journal of biomedical semantics 2, 5(2011), 1-12.
-
(2011)
Journal of Biomedical Semantics
, vol.2
, Issue.5
, pp. 1-12
-
-
Rebholz-Schuhmann, D.1
Yepes, A.J.2
Li, C.3
Kafkas, S.4
Lewin, I.5
Kang, N.6
Corbett, P.7
Milward, D.8
Buyko, E.9
Beisswanger, E.10
-
17
-
-
79952765434
-
Semi-automatic semantic annotation of pub med queries: A study on quality, efficiency, satisfaction
-
2011
-
Névéol, A., Dogan, R. I. and Lu, Z. 2011. Semi-automatic semantic annotation of PubMed queries: A study on quality, efficiency, satisfaction. Journal of Biomedical Informatics 44, 2(2011), 310-318.DOI= http://dx.doi.org/10.1016/j.jbi.2010.11.001.
-
(2011)
Journal of Biomedical Informatics
, vol.44
, Issue.2
, pp. 310-318
-
-
Névéol, A.1
Dogan, R.I.2
Lu, Z.3
-
18
-
-
84890064920
-
Dnorm: Disease name normalization with pair wise learning to rank
-
2013
-
Leaman, R., Dogan, R. I. and Lu, Z. 2013. DNorm: disease name normalization with pairwise learning to rank. Bioinformatics 29, 22(2013), 2909-2917.DOI= http://dx.doi.org/10.1093/bioinformatics/btt474.
-
(2013)
Bioinformatics
, vol.29
, Issue.22
, pp. 2909-2917
-
-
Leaman, R.1
Dogan, R.I.2
Lu, Z.3
-
19
-
-
84861856856
-
SR4GN: A species recognition software tool for gene normalization
-
(2012)
-
Wei, C.-H., Kao, H.-Y. and Lu, Z. 2012. SR4GN: A species recognition software tool for gene normalization. Plos one 7, 6(2012), e38460.DOI= http://dx.doi.org/10.1371/journal.pone.0038460.
-
(2012)
Plos One
, vol.7
, Issue.6
, pp. e38460
-
-
Wei, C.-H.1
Kao, H.-Y.2
Lu, Z.3
-
20
-
-
84863506694
-
CHEM spot: A hybrid system for chemical named entity recognition
-
(2012)
-
Rocktäschel, T., Weidlich, M. and Leser, U. 2012. Chem Spot: A hybrid system for chemical named entity recognition. Bioinformatics 28, 12(2012), 1633-1640.DOI= http://dx.doi.org/10.1093/bioinformatics/bts183.
-
(2012)
Bioinformatics
, vol.28
, Issue.12
, pp. 1633-1640
-
-
Rocktäschel, T.1
Weidlich, M.2
Leser, U.3
-
21
-
-
80053432627
-
Cross-species gene normalization by species inference
-
(2011)
-
Wei, C.-H. and Kao, H.-Y. 2011. Cross-species gene normalization by species inference. BMC bioinformatics 12, Suppl 8(2011), S5.DOI=http://dx.doi.org/10.1186/1471-2105-12-S8-S5.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S5
-
-
Wei, C.-H.1
Kao, H.-Y.2
-
22
-
-
84920719766
-
Detecting concept mentions in biomedical text using hidden Markov model: Multiple concept types at once or one at a time?
-
(2014)
-
Torii, M., Wagholikar, K. and Liu, H. 2014. Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time? Journal of biomedical semantics, 5(2014), 3.DOI=http://dx.doi.org/10.1186/2041-1480-5-3.
-
(2014)
Journal of Biomedical Semantics
, vol.5
, pp. 3
-
-
Torii, M.1
Wagholikar, K.2
Liu, H.3
-
23
-
-
84880841304
-
Improving perceived and actual text difficulty for health information consumers using semi-automated methods
-
(Chicago, USA, November 3-7, 2012). AMIA 2012
-
Leroy, G., Endicott, J. E., Mouradi, O., Kauchak, a. Melissa and Just, L. 2012 Improving Perceived and Actual Text Difficulty for Health Information Consumers using Semi-Automated Methods. In Proceedings of the American Medical Infomatics Association (AMIA) Annual Symposium (Chicago, USA, November 3-7, 2012). AMIA 2012.
-
(2012)
Proceedings of the American Medical Infomatics Association (AMIA) Annual Symposium
-
-
Leroy, G.1
Endicott, J.E.2
Mouradi, O.3
Kauchak, A.M.4
Just, L.5
-
24
-
-
77955440649
-
Simplifying text in medical literature
-
(2007)
-
Ong, E., Damay, J., Lojico, G., Lu, K. and Tarantan, D. 2007. Simplifying text in medical literature. Journal of Research in Science, Computing and Engineering 4, 1(2007), 37- 47.DOI=http://dx.doi.org/10.3860/jrsce.v4i1.441.
-
(2007)
Journal of Research in Science, Computing and Engineering
, vol.4
, Issue.1
, pp. 37-47
-
-
Ong, E.1
Damay, J.2
Lojico, G.3
Lu, K.4
Tarantan, D.5
-
25
-
-
33744782346
-
Syntactic simplification and text cohesion
-
(2006)
-
Siddharthan, A. 2006. Syntactic simplification and text cohesion. Research on Language and Computation 4, 1(2006), 77-109.DOI= http://dx.doi.org/10.1007/s11168-006-9011-1.
-
(2006)
Research on Language and Computation
, vol.4
, Issue.1
, pp. 77-109
-
-
Siddharthan, A.1
-
26
-
-
0031247886
-
Automatic induction of rules for text simplification
-
1997
-
Chandrasekar, R. and Srinivas, B. 1997. Automatic induction of rules for text simplification. Knowledge-Based Systems 10, 3(1997), 183-190.
-
(1997)
Knowledge-Based Systems
, vol.10
, Issue.3
, pp. 183-190
-
-
Chandrasekar, R.1
Srinivas, B.2
-
27
-
-
0005873151
-
1996 Motivations and methods for text simplification
-
(COPENHAGEN, DENMARK Augest 5-9). COLING '96
-
Chandrasekar, R., Doran, C. and Srinivas, B. 1996 Motivations and methods for text simplification. In Proceedings of the Proceedings of the 16th conference on Computational linguistics - Volume 2 (COPENHAGEN, DENMARK Augest 5-9, 1996). COLING '96.
-
(1996)
Proceedings of the Proceedings of the 16th Conference on Computational Linguistics
, vol.2
-
-
Chandrasekar, R.1
Doran, C.2
Srinivas, B.3
-
29
-
-
84875179832
-
Enhancing multi document summaries with sentence simplification
-
(Las Vegas, Nevada, USA, July 19, 2012). ICAI 2012
-
Silveira, S. B. and Branco, A. 2012 Enhancing multi document summaries with sentence simplification. In Proceedings of the ICAI 2012: International Conference on Artificial Intelligence (Las Vegas, Nevada, USA, July 19, 2012). ICAI 2012.
-
(2012)
Proceedings of the ICAI 2012: International Conference on Artificial Intelligence
-
-
Silveira, S.B.1
Branco, A.2
-
30
-
-
84872542427
-
Isimp: A sentence simplification system for biomedical text
-
(Philadelphia, PA, USA, October 4-7). BIBM 2012, 2012
-
Peng, Y., Tudor, C. O., Torii, M., Wu, C. H. and Vijay- Shanker, K. 2012 iSimp: A Sentence Simplification System for Biomedical Text. In Proceedings of the The 2012 IEEE International Conference on Bioinformatics and Biomedicine (Philadelphia, PA, USA, October 4-7, 2012). BIBM 2012.
-
(2012)
Proceedings of the The 2012 IEEE International Conference on Bioinformatics and Biomedicine
-
-
Peng, Y.1
Tudor, C.O.2
Torii, M.3
Wu, C.H.4
Vijay- Shanker, K.5
-
31
-
-
80053262331
-
A monolingual tree-based translation model for sentence simplification
-
(Beijing, China, August 23-27, 2010). Association for Computational Linguistics
-
Zhu, Z., Bernhard, D. and Gurevych, I. 2010 A monolingual tree-based translation model for sentence simplification. In Proceedings of the Proceedings of the 23rd international conference on computational linguistics (Beijing, China, August 23-27, 2010). Association for Computational Linguistics.
-
(2010)
Proceedings of the Proceedings of the 23rd International Conference on Computational Linguistics
-
-
Zhu, Z.1
Bernhard, D.2
Gurevych, I.3
-
32
-
-
80053393097
-
Entity-focused sentence simplification for relation extraction
-
(Beijing, China, August 23-27, 2010). ACL 2010
-
Miwa, M., Saetre, R., Miyao, Y. and Tsujii, J. i. 2010 Entity-focused sentence simplification for relation extraction. In Proceedings of the Proceedings of the 23rd international conference on computational linguistics (Beijing, China, August 23-27, 2010). ACL 2010.
-
(2010)
Proceedings of the Proceedings of the 23rd International Conference on Computational Linguistics
-
-
Miwa, M.1
Saetre, R.2
Miyao, Y.3
Tsujii, J.I.4
-
33
-
-
84964959827
-
Bio simplify: An open source sentence simplification engine to improve recall in automatic biomedical information extraction
-
(Washington, DC, USA, November 11-17, 2010). American Medical Informatics Association
-
Jonnalagadda, S. and Gonzalez, G. 2010 Bio Simplify: An open source sentence simplification engine to improve recall in automatic biomedical information extraction. In Proceedings of the AMIA Annual Symposium Proceedings (Washington, DC, USA, November 11-17, 2010). American Medical Informatics Association.
-
(2010)
Proceedings of the AMIA Annual Symposium Proceedings
-
-
Jonnalagadda, S.1
Gonzalez, G.2
-
34
-
-
78650266299
-
Sentence simplification for semantic role labeling
-
(Stroudsburg, PA, USA, August 23, 2008). Association for Computational Linguistics
-
Vickrey, D. and Koller, D. 2008 Sentence Simplification for Semantic Role Labeling. In Proceedings of the 22nd International Conference on. Computational Linguistics (Stroudsburg, PA, USA, August 23, 2008). Association for Computational Linguistics.
-
(2008)
Proceedings of the 22nd International Conference On. Computational Linguistics
-
-
Vickrey, D.1
Koller, D.2
-
35
-
-
34547927946
-
Beyond sum basic: Task-focused summarization with sentence simplification and lexical expansion
-
(2007)
-
Vanderwende, L., Suzuki, H., Brockett, C. and Nenkova, A. 2007. Beyond Sum Basic: Task-focused summarization with sentence simplification and lexical expansion. Information Processing & Management 43, 6(2007), 1606- 1618.DOI= http://dx.doi.org/10.1016/j.ipm.2007.01.023.
-
(2007)
Information Processing & Management
, vol.43
, Issue.6
, pp. 1606-1618
-
-
Vanderwende, L.1
Suzuki, H.2
Brockett, C.3
Nenkova, A.4
-
36
-
-
70349461888
-
Resolution of coordination ellipses in biological named entities using conditional random fields
-
(Melbourne, Australia, September 19-21, 2007). Pacling
-
Buyko, E., Tomanek, K. and Hahn, U. 2007 Resolution of coordination ellipses in biological named entities using conditional random fields. In Proceedings of the 10th Conference of the Pacific Association for Computational Linguistics (Melbourne, Australia, September 19-21, 2007). Pacling.
-
(2007)
Proceedings of the 10th Conference of the Pacific Association for Computational Linguistics
-
-
Buyko, E.1
Tomanek, K.2
Hahn, U.3
-
37
-
-
4944229711
-
Genia corpus - A semantically annotated corpus for bio textmining
-
2003
-
Kim, J.-D., Ohta, T., Tateisi, Y. and Tsujii, J. i. 2003. GENIA corpus-a semantically annotated corpus for biotextmining. Bioinformatics 19, suppl 1(2003), i180- i182.DOI= http://dx.doi.org/10.1093/bioinformatics/btg1023.
-
(2003)
Bioinformatics
, vol.19
, pp. i180-i182
-
-
Kim, J.-D.1
Ohta, T.2
Tateisi, Y.3
Tsujii, J.I.4
-
38
-
-
84895484578
-
Identifying non-elliptical entity mentions in a coordinated NP with ellipses
-
(2013)
-
Chae, J., Jung, Y., Lee, T., Jung, S., Huh, C., Kim, G., Kim, H. and Oh, H. 2013. Identifying non-elliptical entity mentions in a coordinated NP with ellipses. Journal of Biomedical Informatics, 47(2013), 139-152.DOI= http://dx.doi.org/0.1016/j.jbi.2013.10.002.
-
(2013)
Journal of Biomedical Informatics
, vol.47
, pp. 139-152
-
-
Chae, J.1
Jung, Y.2
Lee, T.3
Jung, S.4
Huh, C.5
Kim, G.6
Kim, H.7
Oh, H.8
-
39
-
-
0142192295
-
Conditional random fields: Probabilistic models for segmenting and labeling sequence data
-
Williamstown, MA, USA, June 28- July 1, 2001
-
Lafferty, J., McCallum, A. and Pereira, F. 2001 Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data. In Proceedings of the Proceedings of the International Conference on Machine Learning (ICML 01) (Williamstown, MA, USA, June 28- July 1, 2001).
-
(2001)
Proceedings of the Proceedings of the International Conference on Machine Learning (ICML 01)
-
-
Lafferty, J.1
McCallum, A.2
Pereira, F.3
-
40
-
-
33646887390
-
On the limited memory BFGS method for large scale optimization
-
1989
-
Liu, D. C. and Nocedal, J. 1989. On the limited memory BFGS method for large scale optimization. Mathematical Programming B 45, 3(1989), 503-528.
-
(1989)
Mathematical Programming B
, vol.45
, Issue.3
, pp. 503-528
-
-
Liu, D.C.1
Nocedal, J.2
-
41
-
-
84878281265
-
Tm var: A text mining approach for extracting sequence variants in biomedical literature
-
(2013)
-
Wei, C.-H., Harris, B. R., Kao, H.-Y. and Lu, Z. 2013. Tm Var: A text mining approach for extracting sequence variants in biomedical literature. Bioinformatics 29, 11(2013), 1433-1439.DOI= http://dx.doi.org/10.1093/bioinformatics/btt156.
-
(2013)
Bioinformatics
, vol.29
, Issue.11
, pp. 1433-1439
-
-
Wei, C.-H.1
Harris, B.R.2
Kao, H.-Y.3
Lu, Z.4
-
42
-
-
79953194522
-
Chemical name to structure: OPSIN, an open source solution
-
(2011)
-
Lowe, D. M., Corbett, P. T., Murray-Rust, P. and Glen, R. C. 2011. Chemical name to structure: OPSIN, an open source solution. Journal of chemical information and modeling 51, 3(2011), 739- 753.DOI=http://dx.doi.org/10.1021/ci100384d.
-
(2011)
Journal of Chemical Information and Modeling
, vol.51
, Issue.3
, pp. 739-753
-
-
Lowe, D.M.1
Corbett, P.T.2
Murray-Rust, P.3
Glen, R.C.4
-
43
-
-
0036678776
-
Tagging gene and protein names in biomedical text
-
(2002)
-
Tanabe, L. and Wilbur, W. J. 2002. Tagging gene and protein names in biomedical text. Bioinformatics 18, 8(2002), 1124- 1132.DOI=http://dx.doi.org/10.1093/bioinformatics/18.8.1124.
-
(2002)
Bioinformatics
, vol.18
, Issue.8
, pp. 1124-1132
-
-
Tanabe, L.1
Wilbur, W.J.2
-
44
-
-
55249111767
-
Abbreviation definition identification based on automatic precision estimates
-
(2008)
-
Sohn, S., Comeau, D. C., Kim, W. and Wilbur, W. J. 2008. Abbreviation definition identification based on automatic precision estimates. BMC bioinformatics 9, 1(2008), 402.DOI= http://dx.doi.org/10.1186/1471-2105-9-402.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 402
-
-
Sohn, S.1
Comeau, D.C.2
Kim, W.3
Wilbur, W.J.4
-
45
-
-
84875575941
-
An improved corpus of disease mentions in pub med citations
-
(Montreal, Canada, June 8, 2012). Association for Computational Linguistics
-
Dogan, R. I. and Lu, Z. 2012 An improved corpus of disease mentions in Pub Med citations. In Proceedings of the Proceedings of the 2012 Workshop on Biomedical Natural Language Processing (Montreal, Canada, June 8, 2012). Association for Computational Linguistics.
-
(2012)
Proceedings of the Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
-
-
Dogan, R.I.1
Lu, Z.2
-
46
-
-
84901009764
-
Overview of the chemical compound and drug name recognition (chemdner) task
-
(Bethesda, Maryland, USA, October 7-9, 2013). BioCreative IV
-
Krallinger, M., Leitner, F., Rabal, O., Vazquez, M., Oyarzabal, J. and Valencia, A. 2013 Overview of the chemical compound and drug name recognition (CHEMDNER) task. In Proceedings of the Proceedings of the fourth Bio Creative challenge evaluation workshop (Bethesda, Maryland, USA, October 7-9, 2013). BioCreative IV.
-
(2013)
Proceedings of the Proceedings of the Fourth Bio Creative Challenge Evaluation Workshop
-
-
Krallinger, M.1
Leitner, F.2
Rabal, O.3
Vazquez, M.4
Oyarzabal, J.5
Valencia, A.6
-
47
-
-
84883572716
-
Pub tator: A web based text mining tool for assisting bio curation
-
(Web Server Issue(2013)
-
Wei, C.-H., Kao, H.-Y. and Lu, Z. 2013. Pub Tator: A Web based text mining tool for assisting Bio curation. Nucleic acids research 41, Web Server Issue(2013), W518- W522.DOI=http://dx.doi.org/10.1093/nar/gkt44.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. W518-W522
-
-
Wei, C.-H.1
Kao, H.-Y.2
Lu, Z.3
-
48
-
-
84920724390
-
Pub tator: A pub med-like interactive curation system for document triage and literature curation
-
(Washington DC, USA, April 5, 2012). Bio Creative 2012 workshop
-
Wei, C.-H., Kao, H.-Y. and Lu, Z. 2012 Pub Tator: A Pub Med-like interactive curation system for document triage and literature curation. In Proceedings of the proceedings of BioCreative (Washington DC, USA, April 5, 2012). Bio Creative 2012 workshop.
-
(2012)
Proceedings of the Proceedings of BioCreative
-
-
Wei, C.-H.1
Kao, H.-Y.2
Lu, Z.3
-
49
-
-
84876499465
-
Accelerating literature curation with text-mining tools: A case study of using pubtator to curate genes in pubmed abstracts
-
(2012), bas041
-
Wei, C.-H., Harris, B. R., Li, D., Berardini, T. Z., Huala, E., Kao, H.-Y. and Lu, Z. 2012. Accelerating literature curation with text-mining tools: A case study of using PubTator to curate genes in PubMed abstracts. Database: The Journal of Biological Databases & Curation, 2012(2012), bas041.DOI=http://dx.doi.org/10.1093/database/bas041.
-
(2012)
Database: The Journal of Biological Databases & Curation, 2012
-
-
Wei, C.-H.1
Harris, B.R.2
Li, D.3
Berardini, T.Z.4
Huala, E.5
Kao, H.-Y.6
Lu, Z.7
-
50
-
-
84895437465
-
NCBI disease corpus: A resource for disease name recognition and concept normalization
-
(2014)
-
Dogan, R. I., Leaman, R. and Lu, Z. 2014. NCBI disease corpus: A resource for disease name recognition and concept normalization. Journal of Biomedical Informatics, 47(2014), 1- 10.DOI=http://dx.doi.org/10.1016/j.jbi.2013.12.006.
-
(2014)
Journal of Biomedical Informatics
, vol.47
, pp. 1-10
-
-
Dogan, R.I.1
Leaman, R.2
Lu, Z.3
-
51
-
-
62549162626
-
High performance gene name normalization with GENO
-
(2009)
-
Wermter, J., Tomanek, K. and Hahn, U. 2009. High performance gene name normalization with GeNo. Bioinformatics 25, 6(2009), 815- 821.DOI=http://dx.doi.org/10.1093/bioinformatics/btp071.
-
(2009)
Bioinformatics
, vol.25
, Issue.6
, pp. 815-821
-
-
Wermter, J.1
Tomanek, K.2
Hahn, U.3
-
52
-
-
49549120418
-
Inter-species normalization of gene mentions with gnat
-
(2008)
-
Hakenberg, J., Plake, C., Leaman, R., Schroeder, M. and Gonzalez, G. 2008. Inter-species normalization of gene mentions with GNAT. Bioinformatics 24, 16(2008), i126- i132.DOI=http://dx.doi.org/10.1093/bioinformatics/btn299.
-
(2008)
Bioinformatics
, vol.24
, Issue.16
, pp. i126-i132
-
-
Hakenberg, J.1
Plake, C.2
Leaman, R.3
Schroeder, M.4
Gonzalez, G.5
|