Improved detection of artifactual viral minority variants in high-throughput sequencing data

Frontiers in Microbiology

Volumn 5, Issue DEC, 2014, Pages

  Welkers, Matthijs R A ^a   Jonges, Marcel ^b,c   Jeeninga, Rienk E ^a   Koopmans, Marion P G ^b,c   de Jong, Menno D ^a  

^a ACADEMIC MEDICAL CENTER   (Netherlands)

^b NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^c ERASMUS MEDICAL CENTER   (Netherlands)

Author keywords

High throughput sequencing; Illumina Hiseq2000; Influenza virus; Minority variants

Indexed keywords

PLASMID DNA; RNA DIRECTED DNA POLYMERASE;

ARTICLE; ARTIFACT; CONTROLLED STUDY; ESCHERICHIA COLI; GENE AMPLIFICATION; GENE SEQUENCE; GENETIC ANALYSIS; HAIRY CATERPILLAR PLOT ANALYSIS; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN CELL; INFLUENZA VIRUS; NONHUMAN; PLASMID; QUALITY CONTROL; REVERSE GENETICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SCORING SYSTEM; SEQUENCE SPECIFIC ERROR ANALYSIS; VIRUS DETECTION; VIRUS GENOME; VIRUS INFECTIVITY;

ORTHOMYXOVIRIDAE;

EID: 84920699459     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2014.00804     Document Type: Article

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