메뉴 건너뛰기




Volumn 88, Issue 3, 2014, Pages 1694-1702

Emergence of the virulence-associated PB2 E627K substitution in a fatal human case of highly pathogenic avian influenza virus A(H7N7) infection as determined by illumina ultra-deep sequencing

Author keywords

[No Author keywords available]

Indexed keywords

BASIC PROTEIN; POLYMERASE BASIC 2 PROTEIN; UNCLASSIFIED DRUG; VIRUS RNA;

EID: 84892472510     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.02044-13     Document Type: Article
Times cited : (66)

References (41)
  • 1
    • 10944250908 scopus 로고    scopus 로고
    • Molecular constraints to interspecies transmission of viral pathogens
    • Webby R, Hoffmann E, Webster R. 2004. Molecular constraints to interspecies transmission of viral pathogens. Nat. Med. 10:S77-S81. http://dx.doi.org/10.1038/nm1151.
    • (2004) Nat. Med. , vol.10
    • Webby, R.1    Hoffmann, E.2    Webster, R.3
  • 2
    • 34247614133 scopus 로고    scopus 로고
    • Understanding the complex pathobiology of high pathogenicity avian influenza viruses in birds
    • Swayne DE. 2007. Understanding the complex pathobiology of high pathogenicity avian influenza viruses in birds. Avian Dis. 51:242-249. http://dx.doi.org/10.1637/7763-110706-REGR.1.
    • (2007) Avian Dis. , vol.51 , pp. 242-249
    • Swayne, D.E.1
  • 3
  • 4
    • 33645421057 scopus 로고    scopus 로고
    • Cumulative number of confirmed human cases of avian influenza A(H5N1) reported to WHO
    • WHO. 2 January, posting date. World Health Organization, Geneva, Switzerland.
    • WHO. 2 January 2013, posting date. Cumulative number of confirmed human cases of avian influenza A(H5N1) reported to WHO. World Health Organization, Geneva, Switzerland. http://www.who.int/influenza/human_animal_interface/EN_GIP_20130705CumulativeNumberH5N 1cases_2.pdf.
    • (2013)
  • 10
    • 73949145224 scopus 로고    scopus 로고
    • Molecular determinants of adaptation of highly pathogenic avian influenza H7N7 viruses to efficient replication in the human host
    • de Wit E, Munster VJ, van Riel D, Beyer WE, Rimmelzwaan GF, Kuiken T, Osterhaus AD, Fouchier RA. 2010. Molecular determinants of adaptation of highly pathogenic avian influenza H7N7 viruses to efficient replication in the human host. J. Virol. 84:1597-1606. http://dx.doi.org/10 .1128/JVI.01783-09.
    • (2010) J. Virol. , vol.84 , pp. 1597-1606
    • de Wit, E.1    Munster, V.J.2    van Riel, D.3    Beyer, W.E.4    Rimmelzwaan, G.F.5    Kuiken, T.6    Osterhaus, A.D.7    Fouchier, R.A.8
  • 11
    • 0035823083 scopus 로고    scopus 로고
    • Molecular basis for high virulence of Hong Kong H5N1 influenza A viruses
    • Hatta M, Gao P, Halfmann P, Kawaoka Y. 2001. Molecular basis for high virulence of Hong Kong H5N1 influenza A viruses. Science 293:1840-1842. http://dx.doi.org/10.1126/science.1062882.
    • (2001) Science , vol.293 , pp. 1840-1842
    • Hatta, M.1    Gao, P.2    Halfmann, P.3    Kawaoka, Y.4
  • 12
    • 24644484686 scopus 로고    scopus 로고
    • Molecular basis of replication of duck H5N1 influenza viruses in a mammalian mouse model
    • Li Z, Chen H, Jiao P, Deng G, Tian G, Li Y, Hoffmann E, Webster RG, Matsuoka Y, Yu K. 2005. Molecular basis of replication of duck H5N1 influenza viruses in a mammalian mouse model. J. Virol. 79:12058-12064. http://dx.doi.org/10.1128/JVI.79.18.12058-12064.2005.
    • (2005) J. Virol. , vol.79 , pp. 12058-12064
    • Li, Z.1    Chen, H.2    Jiao, P.3    Deng, G.4    Tian, G.5    Li, Y.6    Hoffmann, E.7    Webster, R.G.8    Matsuoka, Y.9    Yu, K.10
  • 13
    • 0027468737 scopus 로고
    • A single amino acid in the PB2 gene of influenza A virus is a determinant of host range
    • Subbarao EK, London W, Murphy BR. 1993. A single amino acid in the PB2 gene of influenza A virus is a determinant of host range. J. Virol. 67:1761-1764.
    • (1993) J. Virol. , vol.67 , pp. 1761-1764
    • Subbarao, E.K.1    London, W.2    Murphy, B.R.3
  • 14
    • 29444438899 scopus 로고    scopus 로고
    • The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host
    • Gabriel G, Dauber B, Wolff T, Planz O, Klenk HD, Stech J. 2005. The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host. Proc. Natl. Acad. Sci. U.S.A. 102:18590-18595. http://dx.doi.org/10.1073/pnas.0507415102c.
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 18590-18595
    • Gabriel, G.1    Dauber, B.2    Wolff, T.3    Planz, O.4    Klenk, H.D.5    Stech, J.6
  • 15
    • 65349192767 scopus 로고    scopus 로고
    • Selection of H5N1 influenza virus PB2 during replication in humans
    • Le QM, Sakai-Tagawa Y, Ozawa M, Ito M, Kawaoka Y. 2009. Selection of H5N1 influenza virus PB2 during replication in humans. J. Virol. 83: 5278-5281. http://dx.doi.org/10.1128/JVI.00063-09.
    • (2009) J. Virol. , vol.83 , pp. 5278-5281
    • Le, Q.M.1    Sakai-Tagawa, Y.2    Ozawa, M.3    Ito, M.4    Kawaoka, Y.5
  • 16
    • 84879137202 scopus 로고    scopus 로고
    • Genetic analysis of novel avian A(H7N9) influenza viruses isolated from patients in China, February to April 2013
    • pii=20453
    • Kageyama TFS, Takashita E, Xu H, Yamada S, Uchida Y, Neumann G, Saito T, Kawaoka Y, Tashiro M. 2013. Genetic analysis of novel avian A(H7N9) influenza viruses isolated from patients in China, February to April 2013. Euro Surveill. 18(15):pii=20453. http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20453.
    • (2013) Euro Surveill. , vol.18 , Issue.15
    • Kageyama, T.F.S.1    Takashita, E.2    Xu, H.3    Yamada, S.4    Uchida, Y.5    Neumann, G.6    Saito, T.7    Kawaoka, Y.8    Tashiro, M.9
  • 17
    • 84876477307 scopus 로고    scopus 로고
    • Guiding outbreak management by the use of influenza A(H7Nx) virus sequence analysis
    • pii=20460
    • Jonges M, Meijer A, Fouchier R, Koch G, Li J, Pan J, Chen H, Shu Y, Koopmans M. 2013. Guiding outbreak management by the use of influenza A(H7Nx) virus sequence analysis. Euro Surveill. 18(16):pii=20460. http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20460.
    • (2013) Euro Surveill. , vol.18 , Issue.16
    • Jonges, M.1    Meijer, A.2    Fouchier, R.3    Koch, G.4    Li, J.5    Pan, J.6    Chen, H.7    Shu, Y.8    Koopmans, M.9
  • 18
    • 0035026051 scopus 로고    scopus 로고
    • Residue 627 of PB2 is a determinant of cold sensitivity in RNA replication of avian influenza viruses
    • Massin P, van der Werf S, Naffakh N. 2001. Residue 627 of PB2 is a determinant of cold sensitivity in RNA replication of avian influenza viruses. J. Virol. 75:5398-5404. http://dx.doi.org/10.1128/JVI.75.11.5398-5404.2001.
    • (2001) J. Virol. , vol.75 , pp. 5398-5404
    • Massin, P.1    van der Werf, S.2    Naffakh, N.3
  • 19
    • 33745128950 scopus 로고    scopus 로고
    • Human-to-human transmission of avian influenza A/H7N7, The Netherlands, 2003
    • pii=584
    • Du Ry van Beest Holle M, Meijer A, Koopmans M, de Jager CM. 2005. Human-to-human transmission of avian influenza A/H7N7, The Netherlands, 2003. Euro Surveill. 10(12):pii=584. http://www.eurosurveillance .org/ViewArticle.aspx?ArticleId=584.
    • (2005) Euro Surveill. , vol.10 , Issue.12
    • Du Ry van Beest Holle, M.1    Meijer, A.2    Koopmans, M.3    de Jager, C.M.4
  • 22
    • 0034705225 scopus 로고    scopus 로고
    • A DNA transfection system for generation of influenza A virus from eight plasmids
    • Hoffmann E, Neumann G, Kawaoka Y, Hobom G, Webster RG. 2000. A DNA transfection system for generation of influenza A virus from eight plasmids. Proc. Natl. Acad. Sci. U.S.A. 97:6108-6113. http://dx.doi.org/10.1073/pnas.100133697.
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 6108-6113
    • Hoffmann, E.1    Neumann, G.2    Kawaoka, Y.3    Hobom, G.4    Webster, R.G.5
  • 24
  • 26
    • 80054986522 scopus 로고    scopus 로고
    • Comparative analysis of avian influenza virus diversity in poultry and humans during a highly pathogenic avian influenza A (H7N7) virus outbreak
    • Jonges M, Bataille A, Enserink R, Meijer A, Fouchier RA, Stegeman A, Koch G, Koopmans M. 2011. Comparative analysis of avian influenza virus diversity in poultry and humans during a highly pathogenic avian influenza A (H7N7) virus outbreak. J. Virol. 85:10598-10604. http://dx .doi.org/10.1128/JVI.05369-11.
    • (2011) J. Virol. , vol.85 , pp. 10598-10604
    • Jonges, M.1    Bataille, A.2    Enserink, R.3    Meijer, A.4    Fouchier, R.A.5    Stegeman, A.6    Koch, G.7    Koopmans, M.8
  • 27
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http://dx.doi .org/10.1093/bioinformatics/btp324.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 30
    • 79959858420 scopus 로고    scopus 로고
    • Evolutionary analysis of inter-farm transmission dynamics in a highly pathogenic avian influenza epidemic
    • Bataille A, van der Meer F, Stegeman A, Koch G. 2011. Evolutionary analysis of inter-farm transmission dynamics in a highly pathogenic avian influenza epidemic. PLoS Pathog. 7:e1002094. http://dx.doi.org/10.1371/journal.ppat.1002094.
    • (2011) PLoS Pathog. , vol.7
    • Bataille, A.1    van der Meer, F.2    Stegeman, A.3    Koch, G.4
  • 31
    • 84891829659 scopus 로고    scopus 로고
    • Molecular epidemiological analysis of the transboundary transmission of 2003 highly pathogenic avian influenza H7N7 outbreaks between The Netherlands and Belgium
    • Van Borm S, Jonges M, Lambrecht B, Koch G, Houdart P, van den Berg T. 2012. Molecular epidemiological analysis of the transboundary transmission of 2003 highly pathogenic avian influenza H7N7 outbreaks between The Netherlands and Belgium. Transbound. Emerg. Dis. http://dx .doi.org/10.1111/tbed.12009.
    • (2012) Transbound. Emerg. Dis.
    • Van Borm, S.1    Jonges, M.2    Lambrecht, B.3    Koch, G.4    Houdart, P.5    van den Berg, T.6
  • 32
    • 0022050135 scopus 로고
    • Characterization of virulent and avirulent A/chicken/Pennsylvania/83 influenza A viruses: potential role of defective interfering RNAs in nature
    • Bean WJ, Kawaoka Y, Wood JM, Pearson JE, Webster RG. 1985. Characterization of virulent and avirulent A/chicken/Pennsylvania/83 influenza A viruses: potential role of defective interfering RNAs in nature. J. Virol. 54:151-160.
    • (1985) J. Virol. , vol.54 , pp. 151-160
    • Bean, W.J.1    Kawaoka, Y.2    Wood, J.M.3    Pearson, J.E.4    Webster, R.G.5
  • 33
    • 0014871758 scopus 로고
    • The RNAs of infective and incomplete influenza virions grown in MDBK and HeLa cells
    • Choppin PW, Pons MW. 1970. The RNAs of infective and incomplete influenza virions grown in MDBK and HeLa cells. Virology 42:603-610. http://dx.doi.org/10.1016/0042-6822(70)90306-5.
    • (1970) Virology , vol.42 , pp. 603-610
    • Choppin, P.W.1    Pons, M.W.2
  • 34
    • 0018078456 scopus 로고
    • The RNAs of defective-interfering influenza virus
    • Crumpton WM, Dimmock NJ, Minor PD, Avery RJ. 1978. The RNAs of defective-interfering influenza virus. Virology 90:370-373. http://dx.doi .org/10.1016/0042-6822(78)90322-7.
    • (1978) Virology , vol.90 , pp. 370-373
    • Crumpton, W.M.1    Dimmock, N.J.2    Minor, P.D.3    Avery, R.J.4
  • 35
    • 0036172445 scopus 로고    scopus 로고
    • Defective segment 1 RNAs that interfere with production of infectious influenza A virus require at least 150 nucleotides of 5' sequence: evidence from a plasmid-driven system
    • Duhaut SD, Dimmock NJ. 2002. Defective segment 1 RNAs that interfere with production of infectious influenza A virus require at least 150 nucleotides of 5' sequence: evidence from a plasmid-driven system. J. Gen. Virol. 83:403-411. http://vir.sgmjournals.org/content/83/2/403.full.pdf.
    • (2002) J. Gen. Virol. , vol.83 , pp. 403-411
    • Duhaut, S.D.1    Dimmock, N.J.2
  • 36
    • 0031054526 scopus 로고    scopus 로고
    • Segment-specific noncoding sequences of the influenza virus genome RNA are involved in the specific competition between defective interfering RNA and its progenitor RNA segment at the virion assembly step
    • Odagiri T, Tashiro M. 1997. Segment-specific noncoding sequences of the influenza virus genome RNA are involved in the specific competition between defective interfering RNA and its progenitor RNA segment at the virion assembly step. J. Virol. 71:2138-2145.
    • (1997) J. Virol. , vol.71 , pp. 2138-2145
    • Odagiri, T.1    Tashiro, M.2
  • 37
    • 50149084678 scopus 로고    scopus 로고
    • Influenza virus protecting RNA: an effective prophylactic and therapeutic antiviral
    • Dimmock NJ, Rainsford EW, Scott PD, Marriott AC. 2008. Influenza virus protecting RNA: an effective prophylactic and therapeutic antiviral. J. Virol. 82:8570-8578. http://dx.doi.org/10.1128/JVI.00743-08.
    • (2008) J. Virol. , vol.82 , pp. 8570-8578
    • Dimmock, N.J.1    Rainsford, E.W.2    Scott, P.D.3    Marriott, A.C.4
  • 38
    • 33646162162 scopus 로고    scopus 로고
    • Interfering vaccine (defective interfering influenza A virus) protects ferrets from influenza, and allows them to develop solid immunity to reinfection
    • Mann A, Marriott AC, Balasingam S, Lambkin R, Oxford JS, Dimmock NJ. 2006. Interfering vaccine (defective interfering influenza A virus) protects ferrets from influenza, and allows them to develop solid immunity to reinfection. Vaccine 24:4290-4296. http://dx.doi.org/10.1016/j.vaccine .2006.03.004.
    • (2006) Vaccine , vol.24 , pp. 4290-4296
    • Mann, A.1    Marriott, A.C.2    Balasingam, S.3    Lambkin, R.4    Oxford, J.S.5    Dimmock, N.J.6
  • 39
    • 0028625771 scopus 로고
    • Defective interfering type A equine influenza virus (H3N8) protects mice from morbidity and mortality caused by homologous and heterologous subtypes of influenza A virus
    • Noble S, Dimmock NJ. 1994. Defective interfering type A equine influenza virus (H3N8) protects mice from morbidity and mortality caused by homologous and heterologous subtypes of influenza A virus. J. Gen. Virol. 75(Part 12):3485-3491.
    • (1994) J. Gen. Virol. , vol.75 , Issue.PART 12 , pp. 3485-3491
    • Noble, S.1    Dimmock, N.J.2
  • 40
    • 0020025630 scopus 로고
    • Interferon induction by viruses. VIII. Vesicular stomatitis virus: [+/-]DI-011 particles induce interferon in the absence of standard virions
    • Sekellick MJ, Marcus PI. 1982. Interferon induction by viruses. VIII. Vesicular stomatitis virus: [+/-]DI-011 particles induce interferon in the absence of standard virions. Virology 117:280-285.
    • (1982) Virology , vol.117 , pp. 280-285
    • Sekellick, M.J.1    Marcus, P.I.2
  • 41
    • 33745839246 scopus 로고    scopus 로고
    • Sendai virus defectiveinterfering genomes and the activation of interferon-beta
    • Strahle L, Garcin D, Kolakofsky D. 2006. Sendai virus defectiveinterfering genomes and the activation of interferon-beta. Virology 351: 101-111. http://dx.doi.org/10.1016/j.virol.2006.03.022.
    • (2006) Virology , vol.351 , pp. 101-111
    • Strahle, L.1    Garcin, D.2    Kolakofsky, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.