-
1
-
-
0032893756
-
Malignant transformation alters membrane choline phospholipid metabolism of human mammary epithelial cells
-
Aboagye E.O., Bhujwalla Z.M. Malignant transformation alters membrane choline phospholipid metabolism of human mammary epithelial cells. Cancer Res. 1999, 59:80-84.
-
(1999)
Cancer Res.
, vol.59
, pp. 80-84
-
-
Aboagye, E.O.1
Bhujwalla, Z.M.2
-
2
-
-
79958773294
-
NMR-based metabolomics of mammalian cell and tissue cultures
-
Aranibar N., Borys M., Mackin N.A., Ly V., Abu-Absi N., Abu-Absi S., Niemitz M., Schilling B., Li Z.J., Brock B., Russell R.J., Tymiak A., Reily M.D. NMR-based metabolomics of mammalian cell and tissue cultures. J.Biomol. NMR 2011, 49:195-206.
-
(2011)
J.Biomol. NMR
, vol.49
, pp. 195-206
-
-
Aranibar, N.1
Borys, M.2
Mackin, N.A.3
Ly, V.4
Abu-Absi, N.5
Abu-Absi, S.6
Niemitz, M.7
Schilling, B.8
Li, Z.J.9
Brock, B.10
Russell, R.J.11
Tymiak, A.12
Reily, M.D.13
-
3
-
-
78449285472
-
Early detection of recurrent breast cancer using metabolite profiling
-
Asiago V.M., Alvarado L.Z., Shanaiah N., Gowda G.A., Owusu-Sarfo K., Ballas R.A., Raftery D. Early detection of recurrent breast cancer using metabolite profiling. Cancer Res. 2010, 70:8309-8318.
-
(2010)
Cancer Res.
, vol.70
, pp. 8309-8318
-
-
Asiago, V.M.1
Alvarado, L.Z.2
Shanaiah, N.3
Gowda, G.A.4
Owusu-Sarfo, K.5
Ballas, R.A.6
Raftery, D.7
-
4
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J.R. Stat. Soc. B 1995, 57:289-300.
-
(1995)
J.R. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
5
-
-
84855390232
-
Metabolomic NMR fingerprinting to identify and predict survival of patients with metastatic colorectal cancer
-
Bertini I., Cacciatore S., Jensen B.V., Schou J.V., Johansen J.S., Kruhoffer M., Luchinat C., Nielsen D.L., Turano P. Metabolomic NMR fingerprinting to identify and predict survival of patients with metastatic colorectal cancer. Cancer Res. 2012, 72:356-364.
-
(2012)
Cancer Res.
, vol.72
, pp. 356-364
-
-
Bertini, I.1
Cacciatore, S.2
Jensen, B.V.3
Schou, J.V.4
Johansen, J.S.5
Kruhoffer, M.6
Luchinat, C.7
Nielsen, D.L.8
Turano, P.9
-
6
-
-
19144371287
-
NMR-based metabonomic approaches for evaluating physiological influences on biofluid composition
-
Bollard M.E., Stanley E.G., Lindon J.C., Nicholson J.K., Holmes E. NMR-based metabonomic approaches for evaluating physiological influences on biofluid composition. NMR Biomed. 2005, 18:143-162.
-
(2005)
NMR Biomed.
, vol.18
, pp. 143-162
-
-
Bollard, M.E.1
Stanley, E.G.2
Lindon, J.C.3
Nicholson, J.K.4
Holmes, E.5
-
7
-
-
13244268450
-
30 years' follow up of randomised studies of adjuvant CMF in operable breast cancer: cohort study
-
Bonadonna G., Moliterni A., Zambetti M., Daidone M.G., Pilotti S., Gianni L., Valagussa P. 30 years' follow up of randomised studies of adjuvant CMF in operable breast cancer: cohort study. BMJ 2005, 330:217.
-
(2005)
BMJ
, vol.330
, pp. 217
-
-
Bonadonna, G.1
Moliterni, A.2
Zambetti, M.3
Daidone, M.G.4
Pilotti, S.5
Gianni, L.6
Valagussa, P.7
-
8
-
-
78649681933
-
Merging transcriptomics and metabolomics - advances in breast cancer profiling
-
Borgan E., Sitter B., Lingjaerde O.C., Johnsen H., Lundgren S., Bathen T.F., Sorlie T., Borresen-Dale A.L., Gribbestad I.S. Merging transcriptomics and metabolomics - advances in breast cancer profiling. BMC Cancer 2010, 10:628.
-
(2010)
BMC Cancer
, vol.10
, pp. 628
-
-
Borgan, E.1
Sitter, B.2
Lingjaerde, O.C.3
Johnsen, H.4
Lundgren, S.5
Bathen, T.F.6
Sorlie, T.7
Borresen-Dale, A.L.8
Gribbestad, I.S.9
-
9
-
-
23944466427
-
A pooled analysis of bone marrow micrometastasis in breast cancer
-
Braun S., Vogl F.D., Naume B., Janni W., Osborne M.P., Coombes R.C., Schlimok G., Diel I.J., Gerber B., Gebauer G., Pierga J.Y., Marth C., Oruzio D., Wiedswang G., Solomayer E.F., Kundt G., Strobl B., Fehm T., Wong G.Y., Bliss J., Vincent-Salomon A., Pantel K. A pooled analysis of bone marrow micrometastasis in breast cancer. N.Engl. J. Med. 2005, 353:793-802.
-
(2005)
N.Engl. J. Med.
, vol.353
, pp. 793-802
-
-
Braun, S.1
Vogl, F.D.2
Naume, B.3
Janni, W.4
Osborne, M.P.5
Coombes, R.C.6
Schlimok, G.7
Diel, I.J.8
Gerber, B.9
Gebauer, G.10
Pierga, J.Y.11
Marth, C.12
Oruzio, D.13
Wiedswang, G.14
Solomayer, E.F.15
Kundt, G.16
Strobl, B.17
Fehm, T.18
Wong, G.Y.19
Bliss, J.20
Vincent-Salomon, A.21
Pantel, K.22
more..
-
10
-
-
0035478854
-
Random forests
-
Breiman L. Random forests. Mach. Learn. 2001, 45:5-32.
-
(2001)
Mach. Learn.
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
11
-
-
84865602043
-
Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue - a GC-TOFMS based metabolomics study
-
Budczies J., Denkert C., Muller B.M., Brockmoller S.F., Klauschen F., Gyorffy B., Dietel M., Richter-Ehrenstein C., Marten U., Salek R.M., Griffin J.L., Hilvo M., Orešič M., Wohlgemuth G., Fiehn O. Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue - a GC-TOFMS based metabolomics study. BMC Genomics 2012, 13:334.
-
(2012)
BMC Genomics
, vol.13
, pp. 334
-
-
Budczies, J.1
Denkert, C.2
Muller, B.M.3
Brockmoller, S.F.4
Klauschen, F.5
Gyorffy, B.6
Dietel, M.7
Richter-Ehrenstein, C.8
Marten, U.9
Salek, R.M.10
Griffin, J.L.11
Hilvo, M.12
Orešič, M.13
Wohlgemuth, G.14
Fiehn, O.15
-
12
-
-
0027383940
-
Phosphorylcholine: a novel second messenger essential for mitogenic activity of growth factors
-
Cuadrado A., Carnero A., Dolfi F., Jimenez B., Lacal J.C. Phosphorylcholine: a novel second messenger essential for mitogenic activity of growth factors. Oncogene 1993, 8:2959-2968.
-
(1993)
Oncogene
, vol.8
, pp. 2959-2968
-
-
Cuadrado, A.1
Carnero, A.2
Dolfi, F.3
Jimenez, B.4
Lacal, J.C.5
-
13
-
-
78049485263
-
Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008
-
Ferlay J., Shin H.R., Bray F., Forman D., Mathers C., Parkin D.M. Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008. Int. J. Cancer 2010, 127:2893-2917.
-
(2010)
Int. J. Cancer
, vol.127
, pp. 2893-2917
-
-
Ferlay, J.1
Shin, H.R.2
Bray, F.3
Forman, D.4
Mathers, C.5
Parkin, D.M.6
-
14
-
-
84868123347
-
Lactate and glycine-potential MR biomarkers of prognosis in estrogen receptor-positive breast cancers
-
Giskeodegard G.F., Lundgren S., Sitter B., Fjosne H.E., Postma G., Buydens L.M., Gribbestad I.S., Bathen T.F. Lactate and glycine-potential MR biomarkers of prognosis in estrogen receptor-positive breast cancers. NMR Biomed. 2012, 25:1271-1279.
-
(2012)
NMR Biomed.
, vol.25
, pp. 1271-1279
-
-
Giskeodegard, G.F.1
Lundgren, S.2
Sitter, B.3
Fjosne, H.E.4
Postma, G.5
Buydens, L.M.6
Gribbestad, I.S.7
Bathen, T.F.8
-
15
-
-
0142138236
-
Metabonomics: NMR spectroscopy and pattern recognition analysis of body fluids and tissues for characterisation of xenobiotic toxicity and disease diagnosis
-
Griffin J.L. Metabonomics: NMR spectroscopy and pattern recognition analysis of body fluids and tissues for characterisation of xenobiotic toxicity and disease diagnosis. Curr. Opin. Chem. Biol. 2003, 7:648-654.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 648-654
-
-
Griffin, J.L.1
-
17
-
-
0028015622
-
Automatic data reduction and pattern recognition methods for analysis of 1H nuclear magnetic resonance spectra of human urine from normal and pathological states
-
Holmes E., Foxall P.J., Nicholson J.K., Neild G.H., Brown S.M., Beddell C.R., Sweatman B.C., Rahr E., Lindon J.C., Spraul M., Neidig P. Automatic data reduction and pattern recognition methods for analysis of 1H nuclear magnetic resonance spectra of human urine from normal and pathological states. Anal. Biochem. 1994, 220:284-296.
-
(1994)
Anal. Biochem.
, vol.220
, pp. 284-296
-
-
Holmes, E.1
Foxall, P.J.2
Nicholson, J.K.3
Neild, G.H.4
Brown, S.M.5
Beddell, C.R.6
Sweatman, B.C.7
Rahr, E.8
Lindon, J.C.9
Spraul, M.10
Neidig, P.11
-
18
-
-
0030305457
-
A language for data analysis and graphics
-
Ihaka R., Gentleman R.R. A language for data analysis and graphics. J.Comput. Graph. Stat. 1996, 5:299-314.
-
(1996)
J.Comput. Graph. Stat.
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.R.2
-
19
-
-
84890858348
-
A serum nuclear magnetic resonance-based metabolomic signature of advanced metastatic human breast cancer
-
Jobard E., Pontoizeau C., Blaise B.J., Bachelot T., Elena-Herrmann B., Tredan O. A serum nuclear magnetic resonance-based metabolomic signature of advanced metastatic human breast cancer. Cancer Lett. 2014, 343:33-41.
-
(2014)
Cancer Lett.
, vol.343
, pp. 33-41
-
-
Jobard, E.1
Pontoizeau, C.2
Blaise, B.J.3
Bachelot, T.4
Elena-Herrmann, B.5
Tredan, O.6
-
20
-
-
0036531816
-
Metabolic markers of breast cancer: enhanced choline metabolism and reduced choline-ether-phospholipid synthesis
-
Katz-Brull R., Seger D., Rivenson-Segal D., Rushkin E., Degani H. Metabolic markers of breast cancer: enhanced choline metabolism and reduced choline-ether-phospholipid synthesis. Cancer Res. 2002, 62:1966-1970.
-
(2002)
Cancer Res.
, vol.62
, pp. 1966-1970
-
-
Katz-Brull, R.1
Seger, D.2
Rivenson-Segal, D.3
Rushkin, E.4
Degani, H.5
-
21
-
-
80054765285
-
An HR-MAS MR metabolomics study on breast tissues obtained with core needle biopsy
-
Li M., Song Y., Cho N., Chang J.M., Koo H.R., Yi A., Kim H., Park S., Moon W.K. An HR-MAS MR metabolomics study on breast tissues obtained with core needle biopsy. PLoS ONE 2011, 6:e25563.
-
(2011)
PLoS ONE
, vol.6
, pp. e25563
-
-
Li, M.1
Song, Y.2
Cho, N.3
Chang, J.M.4
Koo, H.R.5
Yi, A.6
Kim, H.7
Park, S.8
Moon, W.K.9
-
22
-
-
0345040873
-
Classification and regression by randomForest
-
Liaw A., Wiener M. Classification and regression by randomForest. R.News 2002, 2:18-22.
-
(2002)
R.News
, vol.2
, pp. 18-22
-
-
Liaw, A.1
Wiener, M.2
-
23
-
-
0030820221
-
Fine-needle biopsy specimens of benign breast lesions distinguished from invasive cancer exvivo with proton MR spectroscopy
-
Mackinnon W.B., Barry P.A., Malycha P.L., Gillett D.J., Russell P., Lean C.L., Doran S.T., Barraclough B.H., Bilous M., Mountford C.E. Fine-needle biopsy specimens of benign breast lesions distinguished from invasive cancer exvivo with proton MR spectroscopy. Radiology 1997, 204:661-666.
-
(1997)
Radiology
, vol.204
, pp. 661-666
-
-
Mackinnon, W.B.1
Barry, P.A.2
Malycha, P.L.3
Gillett, D.J.4
Russell, P.5
Lean, C.L.6
Doran, S.T.7
Barraclough, B.H.8
Bilous, M.9
Mountford, C.E.10
-
24
-
-
0035672607
-
Diagnosis and prognosis of breast cancer by magnetic resonance spectroscopy of fine-needle aspirates analysed using a statistical classification strategy
-
Mountford C.E., Somorjai R.L., Malycha P., Gluch L., Lean C., Russell P., Barraclough B., Gillett D., Himmelreich U., Dolenko B., Nikulin A.E., Smith I.C. Diagnosis and prognosis of breast cancer by magnetic resonance spectroscopy of fine-needle aspirates analysed using a statistical classification strategy. Br. J. Surg. 2001, 88:1234-1240.
-
(2001)
Br. J. Surg.
, vol.88
, pp. 1234-1240
-
-
Mountford, C.E.1
Somorjai, R.L.2
Malycha, P.3
Gluch, L.4
Lean, C.5
Russell, P.6
Barraclough, B.7
Gillett, D.8
Himmelreich, U.9
Dolenko, B.10
Nikulin, A.E.11
Smith, I.C.12
-
25
-
-
33750719994
-
Global systems biology, personalized medicine and molecular epidemiology
-
Nicholson J.K. Global systems biology, personalized medicine and molecular epidemiology. Mol. Syst. Biol. 2006, 2:52.
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 52
-
-
Nicholson, J.K.1
-
26
-
-
79957798468
-
Identification of a serum-detectable metabolomic fingerprint potentially correlated with the presence of micrometastatic disease in early breast cancer patients at varying risks of disease relapse by traditional prognostic methods
-
Oakman C., Tenori L., Claudino W.M., Cappadona S., Nepi S., Battaglia A., Bernini P., Zafarana E., Saccenti E., Fornier M., Morris P.G., Biganzoli L., Luchinat C., Bertini I., Di Leo A. Identification of a serum-detectable metabolomic fingerprint potentially correlated with the presence of micrometastatic disease in early breast cancer patients at varying risks of disease relapse by traditional prognostic methods. Ann. Oncol. 2011, 22:1295-1301.
-
(2011)
Ann. Oncol.
, vol.22
, pp. 1295-1301
-
-
Oakman, C.1
Tenori, L.2
Claudino, W.M.3
Cappadona, S.4
Nepi, S.5
Battaglia, A.6
Bernini, P.7
Zafarana, E.8
Saccenti, E.9
Fornier, M.10
Morris, P.G.11
Biganzoli, L.12
Luchinat, C.13
Bertini, I.14
Di Leo, A.15
-
27
-
-
19944422061
-
A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer
-
Paik S., Shak S., Tang G., Kim C., Baker J., Cronin M., Baehner F.L., Walker M.G., Watson D., Park T., Hiller W., Fisher E.R., Wickerham D.L., Bryant J., Wolmark N. A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. N.Engl. J. Med. 2004, 351:2817-2826.
-
(2004)
N.Engl. J. Med.
, vol.351
, pp. 2817-2826
-
-
Paik, S.1
Shak, S.2
Tang, G.3
Kim, C.4
Baker, J.5
Cronin, M.6
Baehner, F.L.7
Walker, M.G.8
Watson, D.9
Park, T.10
Hiller, W.11
Fisher, E.R.12
Wickerham, D.L.13
Bryant, J.14
Wolmark, N.15
-
28
-
-
0035865149
-
Computer program to assist in making decisions about adjuvant therapy for women with early breast cancer
-
Ravdin P.M., Siminoff L.A., Davis G.J., Mercer M.B., Hewlett J., Gerson N., Parker H.L. Computer program to assist in making decisions about adjuvant therapy for women with early breast cancer. J.Clin. Oncol. 2001, 19:980-991.
-
(2001)
J.Clin. Oncol.
, vol.19
, pp. 980-991
-
-
Ravdin, P.M.1
Siminoff, L.A.2
Davis, G.J.3
Mercer, M.B.4
Hewlett, J.5
Gerson, N.6
Parker, H.L.7
-
29
-
-
33749529146
-
Pattern recognition and biomarker validation using quantitative 1H-NMR-based metabolomics
-
Serkova N.J., Niemann C.U. Pattern recognition and biomarker validation using quantitative 1H-NMR-based metabolomics. Expert Rev. Mol. Diagn. 2006, 6:717-731.
-
(2006)
Expert Rev. Mol. Diagn.
, vol.6
, pp. 717-731
-
-
Serkova, N.J.1
Niemann, C.U.2
-
30
-
-
0028793869
-
Pyruvate utilization, phosphocholine and adenosine triphosphate (ATP) are markers of human breast tumor progression: a 31P- and 13C-nuclear magnetic resonance (NMR) spectroscopy study
-
Singer S., Souza K., Thilly W.G. Pyruvate utilization, phosphocholine and adenosine triphosphate (ATP) are markers of human breast tumor progression: a 31P- and 13C-nuclear magnetic resonance (NMR) spectroscopy study. Cancer Res. 1995, 55:5140-5145.
-
(1995)
Cancer Res.
, vol.55
, pp. 5140-5145
-
-
Singer, S.1
Souza, K.2
Thilly, W.G.3
-
31
-
-
78650375977
-
Urine metabolite analysis offers potential early diagnosis of ovarian and breast cancers
-
Slupsky C.M., Steed H., Wells T.H., Dabbs K., Schepansky A., Capstick V., Faught W., Sawyer M.B. Urine metabolite analysis offers potential early diagnosis of ovarian and breast cancers. Clin. Cancer Res. 2010, 16:5835-5841.
-
(2010)
Clin. Cancer Res.
, vol.16
, pp. 5835-5841
-
-
Slupsky, C.M.1
Steed, H.2
Wells, T.H.3
Dabbs, K.4
Schepansky, A.5
Capstick, V.6
Faught, W.7
Sawyer, M.B.8
-
32
-
-
0027964789
-
Automatic reduction of NMR spectroscopic data for statistical and pattern recognition classification of samples
-
Spraul M., Neidig P., Klauck U., Kessler P., Holmes E., Nicholson J.K., Sweatman B.C., Salman S.R., Farrant R.D., Rahr E., Beddel C.R., Lindon J.C. Automatic reduction of NMR spectroscopic data for statistical and pattern recognition classification of samples. J.Pharm. Biomed. Anal. 1994, 12:1215-1225.
-
(1994)
J.Pharm. Biomed. Anal.
, vol.12
, pp. 1215-1225
-
-
Spraul, M.1
Neidig, P.2
Klauck, U.3
Kessler, P.4
Holmes, E.5
Nicholson, J.K.6
Sweatman, B.C.7
Salman, S.R.8
Farrant, R.D.9
Rahr, E.10
Beddel, C.R.11
Lindon, J.C.12
-
33
-
-
0037102125
-
Molecular detection of cytokeratin-19-positive cells in the peripheral blood of patients with operable breast cancer: evaluation of their prognostic significance
-
Stathopoulou A., Vlachonikolis I., Mavroudis D., Perraki M., Kouroussis C., Apostolaki S., Malamos N., Kakolyris S., Kotsakis A., Xenidis N., Reppa D., Georgoulias V. Molecular detection of cytokeratin-19-positive cells in the peripheral blood of patients with operable breast cancer: evaluation of their prognostic significance. J.Clin. Oncol. 2002, 20:3404-3412.
-
(2002)
J.Clin. Oncol.
, vol.20
, pp. 3404-3412
-
-
Stathopoulou, A.1
Vlachonikolis, I.2
Mavroudis, D.3
Perraki, M.4
Kouroussis, C.5
Apostolaki, S.6
Malamos, N.7
Kakolyris, S.8
Kotsakis, A.9
Xenidis, N.10
Reppa, D.11
Georgoulias, V.12
-
34
-
-
72449170109
-
An introduction to recursive partitioning: rationale, application, and characteristics of classification and regression trees, bagging, and random forests
-
Strobl C., Malley J., Tutz G. An introduction to recursive partitioning: rationale, application, and characteristics of classification and regression trees, bagging, and random forests. Psychol. Methods 2009, 14:323-348.
-
(2009)
Psychol. Methods
, vol.14
, pp. 323-348
-
-
Strobl, C.1
Malley, J.2
Tutz, G.3
-
35
-
-
39049196278
-
Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites
-
Urbanczyk-Wochniak E., Willmitzer L., Fernie A.R. Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites. Methods Mol. Biol. 2007, 358:77-85.
-
(2007)
Methods Mol. Biol.
, vol.358
, pp. 77-85
-
-
Urbanczyk-Wochniak, E.1
Willmitzer, L.2
Fernie, A.R.3
-
36
-
-
0038688696
-
Peripheral blood circulating cytokeratin-19 mRNA-positive cells after the completion of adjuvant chemotherapy in patients with operable breast cancer
-
Xenidis N., Vlachonikolis I., Mavroudis D., Perraki M., Stathopoulou A., Malamos N., Kouroussis C., Kakolyris S., Apostolaki S., Vardakis N., Lianidou E., Georgoulias V. Peripheral blood circulating cytokeratin-19 mRNA-positive cells after the completion of adjuvant chemotherapy in patients with operable breast cancer. Ann. Oncol. 2003, 14:849-855.
-
(2003)
Ann. Oncol.
, vol.14
, pp. 849-855
-
-
Xenidis, N.1
Vlachonikolis, I.2
Mavroudis, D.3
Perraki, M.4
Stathopoulou, A.5
Malamos, N.6
Kouroussis, C.7
Kakolyris, S.8
Apostolaki, S.9
Vardakis, N.10
Lianidou, E.11
Georgoulias, V.12
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