Structural Analysis of Complex Molecular Systems by High-Resolution and Tandem Mass Spectrometry

Discovering the Future of Molecular Sciences

Volumn 9783527335442, Issue , 2014, Pages 63-90

  Tsybin, Yury O ^a  

^a EPFL   (Switzerland)

Author keywords

Fourier transform; High resolution MS; Ion cyclotron resonance; Mass spectrometry; Orbitrap; Tandem mass spectrometry

Indexed keywords

ACTIVATION ANALYSIS; CYCLOTRONS; ELECTRON CYCLOTRON RESONANCE; ION BEAMS; IONS; PROTEINS; SIGNAL PROCESSING; STRUCTURAL ANALYSIS;

COMPLEX MOLECULAR SYSTEMS; FOURIER TRANSFORM MASS SPECTROMETERS; HIGH RESOLUTION; HIGH RESOLUTION MASS SPECTROMETRY; HIGH-RESOLUTION MS; ION CYCLOTRON RESONANCE; ORBITRAP; STATE OF THE ART; TANDEM MASS SPECTROMETRY; TANDEM-MASS SPECTROMETRY;

MASS SPECTROMETRY;

EID: 84919910384     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9783527673223.ch3     Document Type: Chapter

References (65)

1. Zubarev, R.A. (2013) Proteomics, 13, 723-726.
2. Michalski, A., Cox, J., and Mann, M. (2011) J. Proteome Res., 10, 1785-1793.
3. Sabido, E., Selevsek, N., and Aebersold, R. (2012) Curr. Opin. Biotechnol., 23, 591-597.
4. Marshall, A.G. and Hendrickson, C.L. (2008) Annu. Rev. Anal. Chem., 1, 579-599.
5. Xian, F., Hendrickson, C.L., and Marshall, A.G. (2012) Anal. Chem., 84, 708-719.
6. Marshall, A.G., Hendrickson, C.L., and Shi, S.D.H. (2002) Anal. Chem., 74, 252 A-259 A.
7. Marshall, A.G., Hendrickson, C.L., and Jackson, G.S. (1998) Mass Spectrom. Rev., 17, 1-35.
8. Scigelova, M., Hornshaw, M., Giannakopulos, A., and Makarov, A. (2011) Mol. Cell. Proteomics, 10. doi:10.1074/mcp.M111.009431
9. Zubarev, R.A. and Makarov, A. (2013) Anal. Chem., 85, 5288-5296.
10. Makarov, A. (2000) Anal. Chem., 72, 1156-1162.
11. Zajfman, D., Rudich, Y., Sagi, I., Strasser, D., Savin, D.W., Goldberg, S., Rappaport, M., and Heber, O. (2003) Int. J. Mass Spectrom., 229, 55-60.
12. Gonin, M. (2003) Electrostatic ion trap mass spectrometers. US Patent 10/449328.
13. Hilger, R.T., Santini, R.E., and McLuckey, S.A. (2013) Anal. Chem., 85, 5226-5232.
14. Doussineau, T., Bao, C.Y., Clavier, C., Dagany, X., Kerleroux, M., Antoine, R., and Dugourd, P. (2011) Rev. Sci. Instrum., 82, 084104.
15. Contino, N.C. and Jarrold, M.F. (2013) Int. J. Mass Spectrom., 345-347, 153-159.
16. Verenchikov, A. (2010) Electrostatic trap mass spectrometer. Patent GB20100000649.
17. Satoh, T., Sato, T., and Tamura, J. (2007) J. Am. Soc. Mass Spectrom., 18, 1318-1323.
18. Marshall, A.G. (2000) Int. J. Mass Spectrom., 200, 331-356.
19. Tolmachev, A.V., Robinson, E.W., Wu, S., Kang, H., Lourette, N.M., Pasa-Tolic, L., and Smith, R.D. (2008) J. Am. Soc. Mass Spectrom., 19, 586-597.
20. Kaiser, N.K., Savory, J.J., McKenna, A.M., Quinn, J.P., Hendrickson, C.L., and Marshall, A.G. (2011) Anal. Chem., 83, 6907-6910.
21. Boldin, I.A. and Nikolaev, E.N. (2011) Rapid Commun. Mass Spectrom., 25, 122-126.
22. Nikolaev, E.N., Jertz, R., Grigoryev, A., and Baykut, G. (2012) Anal. Chem., 84, 2275-2283.
23. Kostyukevich, Y.I., Vladimirov, G.N., and Nikolaev, E.N. (2012) J. Am. Soc. Mass. Spectrom., 23, 2198-2207.
24. Denisov, E., Damoc, E., Lange, O., and Makarov, A. (2012) Int. J. Mass Spectrom., 325-327, 80-85.
25. Michalski, A., Damoc, E., Lange, O., Denisov, E., Nolting, D., Mueller, M., Viner, R., Schwartz, J., Remes, P., Belford, M., Dunyach, J.-J., Cox, J., Horning, S., Mann, M., and Makarov, A. (2012) Mol. Cell. Proteomics, 11, 013698/1-013698/11.
26. Michalski, A., Damoc, E., Hauschild, J.P., Lange, O., Wieghaus, A., Makarov, A., Nagaraj, N., Cox, J., Mann, M., and Horning, S. (2011) Mol. Cell. Proteomics, 10. doi: 10.1074/mcp.M111.011015
27. Olsen, J.V., Macek, B., Lange, O., Makarov, A., Horning, S., and Mann, M. (2007) Nat. Methods, 4, 709-712.
28. Marshall, A.G. and Rodgers, R.P. (2008) Proc. Natl. Acad. Sci. U.S.A., 105, 18090-18095.
29. Hsu, C.-S., Hendrickson, C.L., Rodgers, R.P., McKenna, A.M., and Marshall, A.G. (2011) J. Mass Spectrom., 46, 337-343.
30. Zhurov, K.O., Kozhinov, A.N., and Tsybin, Y.O. (2013) Energy Fuel, 27, 2974-2983.
31. Rodgers, R.P. and McKenna, A.M. (2011) Anal. Chem., 83, 4665-4687.
32. Kekäläinen, T., Pakarinen, J.M.H., Wickström, K., Lobodin, V.V., McKenna, A.M., and Jänis, J. (2013) Energy Fuel, 27, 2002-2009.
33. Kozhinov, A.N., Zhurov, K.O., and Tsybin, Y.O. (2013) Anal. Chem., 85, 6437-6445.
34. Smith, E.A., Brown, R.C., and Lee, Y.J. (2009) Abstracts, 44th Midwest Regional Meeting of the American Chemical Society, Iowa City, IA, October 21-24, 2009, p. MWRM-277.
35. Heck, A.J.R. (2008) Nat. Methods, 5, 927-933.
36. Rosati, S., Thompson, N.J., and Heck, A.J.R. (2013) TrAC, Trends Anal. Chem., 48, 72-80.
37. Snijder, J., Rose, R.J., Veesler, D., Johnson, J.E., and Heck, A.J.R. (2013) Angew. Chem. Int. Ed., 52, 4020-4023.
38. Yin, S. and Loo, J.A. (2011) Int. J. Mass Spectrom., 300, 118-122.
39. Tsybin, Y.O., Fornelli, L., Stoermer, C., Luebeck, M., Parra, J., Nallet, S., Wurm, F.M., and Hartmer, R. (2011) Anal. Chem., 83, 8919-8927.
40. Fornelli, L., Damoc, E., Thomas, P.M., Kelleher, N.L., Aizikov, K., Denisov, E., Makarov, A., and Tsybin, Y.O. (2012) Mol. Cell. Proteomics: MCP, 11, 1758-1767.
41. Valeja, S.G., Kaiser, N.K., Xian, F., Hendrickson, C.L., Rouse, J.C., and Marshall, A.G. (2011) Anal. Chem., 83, 8391-8395.
42. Shaw, J.B. and Brodbelt, J.S. (2013) Anal. Chem., 85, 8313-8318.
43. Tipton, J.D., Tran, J.C., Catherman, A.D., Ahlf, D.R., Durbin, K.R., and Kelleher, N.L. (2011) J. Biol. Chem., 286, 25451-25458.
44. Zhurov, K.O., Fornelli, L., Wodrich, M.D., Laskay, U.A., and Tsybin, Y.O. (2013) Chem. Soc. Rev., 42, 5014-5030.
45. McLuckey, S. and Mentinova, M. (2011) J. Am. Soc. Mass. Spectrom., 22, 3-12.
46. Cooper, H.J., Hakansson, K., and Marshall, A.G. (2005) Mass Spectrom. Rev., 24, 201-222.
47. Zubarev, R.A., Kelleher, N.L., and McLafferty, F.W. (1998) J. Am. Chem. Soc., 120, 3265-3266.
48. Good, D.M., Wirtala, M., McAlister, G.C., and Coon, J.J. (2007) Mol. Cell. Proteomics, 6, 1942-1951.
49. Tsybin, Y.O., Quinn, J.P., Tsybin, O.Y., Hendrickson, C.L., and Marshall, A.G. (2008) J. Am. Soc. Mass. Spectrom., 19, 762-771.
50. Tsybin, Y.O., Witt, M., Baykut, G., Kjeldsen, F., and Hakansson, P. (2003) Rapid Commun. Mass Spectrom., 17, 1759-1768.
51. Shaw, J.B., Li, W., Holden, D.D., Zhang, Y., Griep-Raming, J., Fellers, R.T., Early, B.P., Thomas, P.M., Kelleher, N.L., and Brodbelt, J.S. (2013) J. Am. Chem. Soc., 135, 12646-12651.
52. Schaub, T.M., Hendrickson, C.L., Horning, S., Quinn, J.P., Senko, M.W., and Marshall, A.G. (2008) Anal. Chem., 80, 3985-3990.
53. Kim, S., Rodgers, R.P., and Marshall, A.G. (2006) Int. J. Mass Spectrom., 251, 260-265.
54. Miladinovic, S.M., Kozhinov, A.N., Gorshkov, M.V., and Tsybin, Y.O. (2012) Anal. Chem., 84, 4042-4051.
55. Smith, L.M. and Kelleher, N.L., Consortium Top Down Proteomics (2013) Nat. Methods, 10, 186-187.
56. Cannon, J., Lohnes, K., Wynne, C., Wang, Y., Edwards, N., and Fenselau, C. (2010) J. Proteome Res., 9, 3886-3890.
57. Wu, C., Tran, J.C., Zamdborg, L., Durbin, K.R., Li, M.X., Ahlf, D.R., Early, B.P., Thomas, P.M., Sweedler, J.V., and Kelleher, N.L. (2012) Nat. Methods, 9, 822-824.
58. Laskay, U.A., Srzentic, K., Fornelli, L., Upir, O., Kozhinov, A.N., Monod, M., and Tsybin, Y.O. (2013) CHIMIA Int. J. Chem., 67, 244-249.
59. Ge, Y., Rybakova, I.N., Xu, Q., and Moss, R.L. (2009) Proc. Natl. Acad. Sci. U.S.A., 106, 12658-12663.
60. Kilgour, D.P.A., Wills, R., Qi, Y.L., and O'Connor, P.B. (2013) Anal. Chem., 85, 3903-3911.
61. Qi, Y.L., Barrow, M.P., Li, H.L., Meier, J.E., Van Orden, S.L., Thompson, C.J., and O'Connor, P.B. (2012) Anal. Chem., 84, 2923-2929.
62. Hilger, R.T., Wyss, P.J., Santini, R.E., and McLuckey, S.A. (2013) Anal. Chem., 85, 8075-8079.
63. Lange, O. (2011) Methods and apparatus for producing a mass spectrum. US Patent 20110240841.
64. Xian, F., Hendrickson, C.L., Blakney, G.T., Beu, S.C., and Marshall, A.G. (2010) Anal. Chem., 82, 8807-8812.
65. Kozhinov, A.N. and Tsybin, Y.O. (2012) Anal. Chem., 84, 2850-2856.