-
1
-
-
0027333558
-
β-D-glucosyl-hydroxymethyluracil: A novel modified base present in the DNA of the parasitic protozoan T. Brucei
-
1:CAS:528:DyaK2cXpslKisQ%3D%3D
-
Gommers-Ampt, J.H., Van Leeuwen, F., de Beer, A.L., Vliegenthart, J.F., Dizdaroglu, M., Kowalak, J.A., Crain, P.F., Borst, P.: β-D-glucosyl-hydroxymethyluracil: a novel modified base present in the DNA of the parasitic protozoan T. brucei. Cell 75, 1129-1136 (1993)
-
(1993)
Cell
, vol.75
, pp. 1129-1136
-
-
Gommers-Ampt, J.H.1
Van Leeuwen, F.2
De Beer, A.L.3
Vliegenthart, J.F.4
Dizdaroglu, M.5
Kowalak, J.A.6
Crain, P.F.7
Borst, P.8
-
2
-
-
0032478197
-
β-D-glucosyl-hydroxymethyluracil is a conserved DNA modification in kinetoplastid protozoans and is abundant in their telomeres
-
van Leeuwen, F., Taylor, M.C., Mondragon, A., Moreau, H., Gibson, W., Kieft, R., Borst, P.: β-D-glucosyl-hydroxymethyluracil is a conserved DNA modification in kinetoplastid protozoans and is abundant in their telomeres. Proc. Natl. Acad. Sci. U. S. A. 95, 2366-2371 (1998)
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 2366-2371
-
-
Van Leeuwen, F.1
Taylor, M.C.2
Mondragon, A.3
Moreau, H.4
Gibson, W.5
Kieft, R.6
Borst, P.7
-
3
-
-
0034663668
-
Base J originally found in kinetoplastida is also a minor constituent of nuclear DNA of Euglena gracilis
-
1:CAS:528:DC%2BD3cXmtVegtb0%3D
-
Dooijes, D., Chaves, I., Kieft, R., Dirks-Mulder, A., Martin, W., Borst, P.: Base J originally found in kinetoplastida is also a minor constituent of nuclear DNA of Euglena gracilis. Nucleic Acids Res. 28, 3017-3021 (2000)
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3017-3021
-
-
Dooijes, D.1
Chaves, I.2
Kieft, R.3
Dirks-Mulder, A.4
Martin, W.5
Borst, P.6
-
4
-
-
0029992188
-
The telomeric GGGTTA repeats of Trypanosoma brucei contain the hypermodified base J in both strands
-
van Leeuwen, F., Wijsman, E.R., Kuyl-Yeheskiely, E., van der Marel, G.A., van Boom, J.H., Borst, P.: The telomeric GGGTTA repeats of Trypanosoma brucei contain the hypermodified base J in both strands. Nucleic Acids Res. 24, 2476-2482 (1996)
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2476-2482
-
-
Van Leeuwen, F.1
Wijsman, E.R.2
Kuyl-Yeheskiely, E.3
Van Der Marel, G.A.4
Van Boom, J.H.5
Borst, P.6
-
5
-
-
34249856759
-
Telomeric localization of the modified DNA base J in the genome of the protozoan parasite Leishmania
-
1:CAS:528:DC%2BD2sXmsVWgtr8%3D
-
Genest, P.A., Ter Riet, B., Cijsouw, T., van Luenen, H.G., Borst, P.: Telomeric localization of the modified DNA base J in the genome of the protozoan parasite Leishmania. Nucleic Acids Res. 35, 2116-2124 (2007)
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2116-2124
-
-
Genest, P.A.1
Ter Riet, B.2
Cijsouw, T.3
Van Luenen, H.G.4
Borst, P.5
-
6
-
-
36148996882
-
Telomeric co-localization of the modified base J and contingency genes in the protozoan parasite Trypanosoma cruzi
-
1:CAS:528:DC%2BD2sXht1yktb3E
-
Ekanayake, D.K., Cipriano, M.J., Sabatini, R.: Telomeric co-localization of the modified base J and contingency genes in the protozoan parasite Trypanosoma cruzi. Nucleic Acids Res. 35, 6367-6377 (2007)
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6367-6377
-
-
Ekanayake, D.K.1
Cipriano, M.J.2
Sabatini, R.3
-
7
-
-
0033839259
-
Tandemly repeated DNA is a target for the partial replacement of thymine by β-D-glucosyl-hydroxymethyluracil in Trypanosoma brucei
-
van Leeuwen, F., Kieft, R., Cross, M., Borst, P.: Tandemly repeated DNA is a target for the partial replacement of thymine by β-D-glucosyl-hydroxymethyluracil in Trypanosoma brucei. Mol. Biochem. Parasitol. 109, 133-145 (2000)
-
(2000)
Mol. Biochem. Parasitol.
, vol.109
, pp. 133-145
-
-
Van Leeuwen, F.1
Kieft, R.2
Cross, M.3
Borst, P.4
-
8
-
-
77955068921
-
Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei
-
1:CAS:528:DC%2BC3cXotlCjtLo%3D
-
Cliffe, L.J., Siegel, T.N., Marshall, M., Cross, G.A., Sabatini, R.: Two thymidine hydroxylases differentially regulate the formation of glucosylated DNA at regions flanking polymerase II polycistronic transcription units throughout the genome of Trypanosoma brucei. Nucleic Acids Res. 38, 3923-3935 (2010)
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3923-3935
-
-
Cliffe, L.J.1
Siegel, T.N.2
Marshall, M.3
Cross, G.A.4
Sabatini, R.5
-
9
-
-
63249106600
-
JBP1 and JBP2 are two distinct thymidine hydroxylases involved in J biosynthesis in genomic DNA of African trypanosomes
-
1:CAS:528:DC%2BD1MXjsV2ksLc%3D
-
Cliffe, L.J., Kieft, R., Southern, T., Birkeland, S.R., Marshall, M., Sweeney, K., Sabatini, R.: JBP1 and JBP2 are two distinct thymidine hydroxylases involved in J biosynthesis in genomic DNA of African trypanosomes. Nucleic Acids Res. 37, 1452-1462 (2009)
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1452-1462
-
-
Cliffe, L.J.1
Kieft, R.2
Southern, T.3
Birkeland, S.R.4
Marshall, M.5
Sweeney, K.6
Sabatini, R.7
-
10
-
-
0030722989
-
Localization of the modified base J in telomeric VSG gene expression sites of Trypanosoma brucei
-
van Leeuwen, F., Wijsman, E.R., Kieft, R., van der Marel, G.A., van Boom, J.H., Borst, P.: Localization of the modified base J in telomeric VSG gene expression sites of Trypanosoma brucei. Genes Dev. 11, 3232-3241 (1997)
-
(1997)
Genes Dev.
, vol.11
, pp. 3232-3241
-
-
Van Leeuwen, F.1
Wijsman, E.R.2
Kieft, R.3
Van Der Marel, G.A.4
Van Boom, J.H.5
Borst, P.6
-
11
-
-
53849113697
-
Base J: Discovery, biosynthesis, and possible functions
-
1:CAS:528:DC%2BD1cXht1Gls7zF
-
Borst, P., Sabatini, R.: Base J: discovery, biosynthesis, and possible functions. Annu. Rev. Microbiol. 62, 235-251 (2008)
-
(2008)
Annu. Rev. Microbiol.
, vol.62
, pp. 235-251
-
-
Borst, P.1
Sabatini, R.2
-
12
-
-
34249845812
-
The protein that binds to DNA base J in trypanosomatids has features of a thymidine hydroxylase
-
1:CAS:528:DC%2BD2sXmsVWgtr4%3D
-
Yu, Z., Genest, P.A., ter Riet, B., Sweeney, K., DiPaolo, C., Kieft, R., Christodoulou, E., Perrakis, A., Simmons, J.M., Hausinger, R.P., van Luenen, H.G., Rigden, D., Sabatini, R., Borst, P.: The protein that binds to DNA base J in trypanosomatids has features of a thymidine hydroxylase. Nucleic Acids Res. 35, 2107-2115 (2007)
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2107-2115
-
-
Yu, Z.1
Genest, P.A.2
Ter Riet, B.3
Sweeney, K.4
Dipaolo, C.5
Kieft, R.6
Christodoulou, E.7
Perrakis, A.8
Simmons, J.M.9
Hausinger, R.P.10
Van Luenen, H.G.11
Rigden, D.12
Sabatini, R.13
Borst, P.14
-
13
-
-
0033570918
-
The modified base J is the target for a novel DNA-binding protein in kinetoplastid protozoans
-
1:CAS:528:DyaK1MXns1OrtLw%3D
-
Cross, M., Kieft, R., Sabatini, R., Wilm, M., de Kort, M., van der Marel, G.A., van Boom, J.H., van Leeuwen, F., Borst, P.: The modified base J is the target for a novel DNA-binding protein in kinetoplastid protozoans. EMBO J. 18, 6573-6581 (1999)
-
(1999)
EMBO J.
, vol.18
, pp. 6573-6581
-
-
Cross, M.1
Kieft, R.2
Sabatini, R.3
Wilm, M.4
De Kort, M.5
Van Der Marel, G.A.6
Van Boom, J.H.7
Van Leeuwen, F.8
Borst, P.9
-
14
-
-
34548299957
-
JBP2, a SWI2/SNF2-like protein, regulates de novo telomeric DNA glycosylation in bloodstream form Trypanosoma brucei
-
1:CAS:528:DC%2BD2sXhtVWitL3N
-
Kieft, R., Brand, V., Ekanayake, D.K., Sweeney, K., DiPaolo, C., Reznikoff, W.S., Sabatini, R.: JBP2, a SWI2/SNF2-like protein, regulates de novo telomeric DNA glycosylation in bloodstream form Trypanosoma brucei. Mol. Biochem. Parasitol. 156, 24-31 (2007)
-
(2007)
Mol. Biochem. Parasitol.
, vol.156
, pp. 24-31
-
-
Kieft, R.1
Brand, V.2
Ekanayake, D.K.3
Sweeney, K.4
Dipaolo, C.5
Reznikoff, W.S.6
Sabatini, R.7
-
15
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
1:CAS:528:DC%2BD1MXlslWnurY%3D
-
Tahiliani, M., Koh, K.P., Shen, Y., Pastor, W.A., Bandukwala, H., Brudno, Y., Agarwal, S., Iyer, L.M., Liu, D.R., Aravind, L., Rao, A.: Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324, 930-935 (2009)
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
16
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal, and inner cell mass specification
-
1:CAS:528:DC%2BC3cXovFCntro%3D
-
Ito, S., D'Alessio, A.C., Taranova, O.V., Hong, K., Sowers, L.C., Zhang, Y.: Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal, and inner cell mass specification. Nature 466, 1129-1133 (2010)
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
17
-
-
77956095231
-
Active DNA demethylation: Many roads lead to Rome
-
1:CAS:528:DC%2BC3cXps1egtbY%3D
-
Wu, S.C., Zhang, Y.: Active DNA demethylation: many roads lead to Rome. Nat. Rev. Mol. Cell Biol. 11, 607-620 (2010)
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
18
-
-
80055117761
-
Epigenetic regulation of polymerase II transcription initiation in Trypanosoma cruzi: Modulation of nucleosome abundance, histone modification, and polymerase occupancy by O-linked thymine DNA glucosylation
-
1:CAS:528:DC%2BC3MXhsV2qtLnE
-
Ekanayake, D., Sabatini, R.: Epigenetic regulation of polymerase II transcription initiation in Trypanosoma cruzi: modulation of nucleosome abundance, histone modification, and polymerase occupancy by O-linked thymine DNA glucosylation. Eukaryot Cell 10, 1465-1472 (2011)
-
(2011)
Eukaryot Cell
, vol.10
, pp. 1465-1472
-
-
Ekanayake, D.1
Sabatini, R.2
-
19
-
-
79953148257
-
Epigenetic regulation of transcription and virulence in Trypanosoma cruzi by O-linked thymine glucosylation of DNA
-
1:CAS:528:DC%2BC3MXotFSjsbg%3D
-
Ekanayake, D.K., Minning, T., Weatherly, B., Gunasekera, K., Nilsson, D., Tarleton, R., Ochsenreiter, T., Sabatini, R.: Epigenetic regulation of transcription and virulence in Trypanosoma cruzi by O-linked thymine glucosylation of DNA. Mol. Cell. Biol. 31, 1690-1700 (2011)
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 1690-1700
-
-
Ekanayake, D.K.1
Minning, T.2
Weatherly, B.3
Gunasekera, K.4
Nilsson, D.5
Tarleton, R.6
Ochsenreiter, T.7
Sabatini, R.8
-
20
-
-
84865683794
-
Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania
-
van Luenen, H.G., Farris, C., Jan, S., Genest, P.A., Tripathi, P., Velds, A., Kerkhoven, R.M., Nieuwland, M., Haydock, A., Ramasamy, G., Vainio, S., Heidebrecht, T., Perrakis, A., Pagie, L., van Steensel, B., Myler, P.J., Borst, P.: Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania. Cell 150, 909-921 (2012)
-
(2012)
Cell
, vol.150
, pp. 909-921
-
-
Van Luenen, H.G.1
Farris, C.2
Jan, S.3
Genest, P.A.4
Tripathi, P.5
Velds, A.6
Kerkhoven, R.M.7
Nieuwland, M.8
Haydock, A.9
Ramasamy, G.10
Vainio, S.11
Heidebrecht, T.12
Perrakis, A.13
Pagie, L.14
Van Steensel, B.15
Myler, P.J.16
Borst, P.17
-
21
-
-
0032079902
-
The modified DNA base β-D-glucosylhydroxymethyluracil confers resistance to micrococcal nuclease and is incompletely recovered by 32P-postlabeling
-
van Leeuwen, F., de Kort, M., van der Marel, G.A., van Boom, J.H., Borst, P.: The modified DNA base β-D-glucosylhydroxymethyluracil confers resistance to micrococcal nuclease and is incompletely recovered by 32P-postlabeling. Anal. Biochem. 258, 223-229 (1998)
-
(1998)
Anal. Biochem.
, vol.258
, pp. 223-229
-
-
Van Leeuwen, F.1
De Kort, M.2
Van Der Marel, G.A.3
Van Boom, J.H.4
Borst, P.5
-
22
-
-
84902360951
-
Mass spectrometry analysis of nucleosides and nucleotides
-
Dudley, E., Bond, L.: Mass spectrometry analysis of nucleosides and nucleotides. Mass Spectrom. Rev. 33, 302-331 (2014)
-
(2014)
Mass Spectrom. Rev.
, vol.33
, pp. 302-331
-
-
Dudley, E.1
Bond, L.2
-
23
-
-
84880521265
-
A quantitative mass spectrometry-based approach for assessing the repair of 8-methoxypsoralen-induced DNA interstrand cross-links and monoadducts in mammalian cells
-
1:CAS:528:DC%2BC3sXpvFamu7Y%3D
-
Liu, S., Wang, Y.: A quantitative mass spectrometry-based approach for assessing the repair of 8-methoxypsoralen-induced DNA interstrand cross-links and monoadducts in mammalian cells. Anal. Chem. 85, 6732-6739 (2013)
-
(2013)
Anal. Chem.
, vol.85
, pp. 6732-6739
-
-
Liu, S.1
Wang, Y.2
-
24
-
-
84892657738
-
Recent advances in the analysis of 5-methylcytosine and its oxidation products
-
1:CAS:528:DC%2BC2cXhtlGmtb8%3D
-
Yuan, B.-F., Feng, Y.-Q.: Recent advances in the analysis of 5-methylcytosine and its oxidation products. TrAC Trends Anal. Chem. 54, 24-35 (2014)
-
(2014)
TrAC Trends Anal. Chem.
, vol.54
, pp. 24-35
-
-
Yuan, B.-F.1
Feng, Y.-Q.2
-
25
-
-
33748956160
-
Collisionally activated dissociation of protonated 2′-deoxycytidine, 2′-deoxyuridine, and their oxidatively damaged derivatives
-
1:CAS:528:DC%2BD28XhtVWqtLnN
-
Cao, H., Wang, Y.: Collisionally activated dissociation of protonated 2′-deoxycytidine, 2′-deoxyuridine, and their oxidatively damaged derivatives. J. Am. Soc. Mass Spectrom. 17, 1335-1341 (2006)
-
(2006)
J. Am. Soc. Mass Spectrom.
, vol.17
, pp. 1335-1341
-
-
Cao, H.1
Wang, Y.2
-
26
-
-
33744504440
-
Identification and quantification of a guanine-thymine intrastrand cross-link lesion induced by Cu(II)/H2O2/ascorbate
-
1:CAS:528:DC%2BD28XjsFOhsrw%3D
-
Hong, H., Cao, H., Wang, Y.: Identification and quantification of a guanine-thymine intrastrand cross-link lesion induced by Cu(II)/H2O2/ascorbate. Chem. Res. Toxicol. 19, 614-621 (2006)
-
(2006)
Chem. Res. Toxicol.
, vol.19
, pp. 614-621
-
-
Hong, H.1
Cao, H.2
Wang, Y.3
-
27
-
-
13244251108
-
Regulation of trypanosome DNA glycosylation by a SWI2/SNF2-like protein
-
1:CAS:528:DC%2BD2MXhs1Oit7s%3D
-
DiPaolo, C., Kieft, R., Cross, M., Sabatini, R.: Regulation of trypanosome DNA glycosylation by a SWI2/SNF2-like protein. Mol. Cell 17, 441-451 (2005)
-
(2005)
Mol. Cell
, vol.17
, pp. 441-451
-
-
Dipaolo, C.1
Kieft, R.2
Cross, M.3
Sabatini, R.4
-
28
-
-
0019800657
-
Activation of trypanosome surface glycoprotein genes involves a duplication-transposition leading to an altered 3′ end
-
1:CAS:528:DyaL38XotVOhtQ%3D%3D
-
Bernards, A., Van der Ploeg, L.H., Frasch, A.C., Borst, P., Boothroyd, J.C., Coleman, S., Cross, G.A.: Activation of trypanosome surface glycoprotein genes involves a duplication-transposition leading to an altered 3′ end. Cell 27, 497-505 (1981)
-
(1981)
Cell
, vol.27
, pp. 497-505
-
-
Bernards, A.1
Van Der Ploeg, L.H.2
Frasch, A.C.3
Borst, P.4
Boothroyd, J.C.5
Coleman, S.6
Cross, G.A.7
-
29
-
-
84894216161
-
Detection of oxidation products of 5-methyl-2′-deoxycytidine in Arabidopsis DNA
-
Liu, S., Dunwell, T.L., Pfeifer, G.P., Dunwell, J.M., Ullah, I., Wang, Y.S.: Detection of oxidation products of 5-methyl-2′-deoxycytidine in Arabidopsis DNA. PLoS One 8, e84620 (2013)
-
(2013)
PLoS One
, vol.8
, pp. e84620
-
-
Liu, S.1
Dunwell, T.L.2
Pfeifer, G.P.3
Dunwell, J.M.4
Ullah, I.5
Wang, Y.S.6
-
30
-
-
84880554318
-
Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA
-
1:CAS:528:DC%2BC3sXhtFSrtbvO
-
Liu, S., Wang, J., Su, Y., Guerrero, C., Zeng, Y., Mitra, D., Brooks, P.J., Fisher, D.E., Song, H., Wang, Y.: Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA. Nucleic Acids Res. 41, 6421-6429 (2013)
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 6421-6429
-
-
Liu, S.1
Wang, J.2
Su, Y.3
Guerrero, C.4
Zeng, Y.5
Mitra, D.6
Brooks, P.J.7
Fisher, D.E.8
Song, H.9
Wang, Y.10
-
31
-
-
84867569521
-
Quantitation of DNA adducts by stable isotope dilution mass spectrometry
-
1:CAS:528:DC%2BC38XhtVOksbrE
-
Tretyakova, N., Goggin, M., Sangaraju, D., Janis, G.: Quantitation of DNA adducts by stable isotope dilution mass spectrometry. Chem. Res. Toxicol. 25, 2007-2035 (2012)
-
(2012)
Chem. Res. Toxicol.
, vol.25
, pp. 2007-2035
-
-
Tretyakova, N.1
Goggin, M.2
Sangaraju, D.3
Janis, G.4
-
32
-
-
0032884462
-
Synthesis of oligodeoxynucleotides containing 5-(β-D-glucopyranosyloxymethyl)-2′-deoxyuridine, a modified nucleoside in the DNA of Trypanosoma brucei
-
AID-EJOC2337>3.0.CO;2-F
-
de Kort, M., Ebrahimi, E., Wijsman, E.R., van der Marel, G.A., van Boom, J.H.: Synthesis of oligodeoxynucleotides containing 5-(β-D-glucopyranosyloxymethyl)-2′-deoxyuridine, a modified nucleoside in the DNA of Trypanosoma brucei. Eur. J. Org. Chem. 1999, 2337-2344 (1999)
-
(1999)
Eur. J. Org. Chem.
, vol.1999
, pp. 2337-2344
-
-
De Kort, M.1
Ebrahimi, E.2
Wijsman, E.R.3
Van Der Marel, G.A.4
Van Boom, J.H.5
-
33
-
-
0141891469
-
Reinvestigation into the synthesis of oligonucleotides containing 5-(β-D-glucopyranosyloxymethyl)-2′-deoxyuridine
-
Turner, J.J., Meeuwenoord, N.J., Rood, A., Borst, P., van der Marel, G.A., van Boom, J.H.: Reinvestigation into the synthesis of oligonucleotides containing 5-(β-D-glucopyranosyloxymethyl)-2′-deoxyuridine. Eur. J. Org. Chem. 2003, 3832-3839 (2003)
-
(2003)
Eur. J. Org. Chem.
, vol.2003
, pp. 3832-3839
-
-
Turner, J.J.1
Meeuwenoord, N.J.2
Rood, A.3
Borst, P.4
Van Der Marel, G.A.5
Van Boom, J.H.6
-
34
-
-
34347231292
-
O-glycoside orientation is an essential aspect of base J recognition by the kinetoplastid DNA-binding protein JBP1
-
1:CAS:528:DC%2BD2sXkslehsro%3D
-
Grover, R.K., Pond, S.J., Cui, Q., Subramaniam, P., Case, D.A., Millar, D.P., Wentworth Jr., P.: O-glycoside orientation is an essential aspect of base J recognition by the kinetoplastid DNA-binding protein JBP1. Angew. Chem. Int. Ed. Engl. 46, 2839-2843 (2007)
-
(2007)
Angew. Chem. Int. Ed. Engl.
, vol.46
, pp. 2839-2843
-
-
Grover, R.K.1
Pond, S.J.2
Cui, Q.3
Subramaniam, P.4
Case, D.A.5
Millar, D.P.6
Wentworth, Jr.P.7
-
35
-
-
84863042219
-
Biochemical characterization of recombinant β-glucosyltransferase and analysis of global 5-hydroxymethylcytosine in unique genomes
-
1:CAS:528:DC%2BC38Xktlyjsg%3D%3D
-
Terragni, J., Bitinaite, J., Zheng, Y., Pradhan, S.: Biochemical characterization of recombinant β-glucosyltransferase and analysis of global 5-hydroxymethylcytosine in unique genomes. Biochemistry 51, 1009-1019 (2012)
-
(2012)
Biochemistry
, vol.51
, pp. 1009-1019
-
-
Terragni, J.1
Bitinaite, J.2
Zheng, Y.3
Pradhan, S.4
-
36
-
-
78049401678
-
Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA
-
Szwagierczak, A., Bultmann, S., Schmidt, C.S., Spada, F., Leonhardt, H.: Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA. Nucleic Acids Res. 38, e181 (2010)
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 181
-
-
Szwagierczak, A.1
Bultmann, S.2
Schmidt, C.S.3
Spada, F.4
Leonhardt, H.5
-
37
-
-
84876944890
-
Quantification of 5-methylcytosine and 5-hydroxymethylcytosine in genomic DNA from hepatocellular carcinoma tissues by capillary hydrophilic-interaction liquid chromatography/quadrupole TOF mass spectrometry
-
1:CAS:528:DC%2BC3sXnsl2nsr0%3D
-
Chen, M.L., Shen, F., Huang, W., Qi, J.H., Wang, Y., Feng, Y.Q., Liu, S.M., Yuan, B.F.: Quantification of 5-methylcytosine and 5-hydroxymethylcytosine in genomic DNA from hepatocellular carcinoma tissues by capillary hydrophilic-interaction liquid chromatography/quadrupole TOF mass spectrometry. Clin. Chem. 59, 824-832 (2013)
-
(2013)
Clin. Chem.
, vol.59
, pp. 824-832
-
-
Chen, M.L.1
Shen, F.2
Huang, W.3
Qi, J.H.4
Wang, Y.5
Feng, Y.Q.6
Liu, S.M.7
Yuan, B.F.8
-
38
-
-
44049123270
-
Tandem mass spectrometry of small, multiply charged oligonucleotides
-
1:CAS:528:DyaK38XhvFCktLw%3D
-
McLuckey, S.A., Van Berkel, G.J., Glish, G.L.: Tandem mass spectrometry of small, multiply charged oligonucleotides. J. Am. Soc. Mass Spectrom. 3, 60-70 (1992)
-
(1992)
J. Am. Soc. Mass Spectrom.
, vol.3
, pp. 60-70
-
-
McLuckey, S.A.1
Van Berkel, G.J.2
Glish, G.L.3
-
39
-
-
0027929921
-
Determination of substituent effects on the proton affinities of natural nucleosides by the kinetic method
-
1:CAS:528:DyaK2cXhvFahsr4%3D
-
Liguori, A., Napoli, A., Sindona, G.: Determination of substituent effects on the proton affinities of natural nucleosides by the kinetic method. Rapid Commun. Mass Spectrom. 8, 89-93 (1994)
-
(1994)
Rapid Commun. Mass Spectrom.
, vol.8
, pp. 89-93
-
-
Liguori, A.1
Napoli, A.2
Sindona, G.3
-
40
-
-
84865111457
-
Binding of the J-binding protein to DNA containing glucosylated hmU (base J) or 5-hmC: Evidence for a rapid conformational change upon DNA binding
-
1:CAS:528:DC%2BC38XpvVKktLw%3D
-
Heidebrecht, T., Fish, A., von Castelmur, E., Johnson, K.A., Zaccai, G., Borst, P., Perrakis, A.: Binding of the J-binding protein to DNA containing glucosylated hmU (base J) or 5-hmC: evidence for a rapid conformational change upon DNA binding. J. Am. Chem. Soc. 134, 13357-13365 (2012)
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 13357-13365
-
-
Heidebrecht, T.1
Fish, A.2
Von Castelmur, E.3
Johnson, K.A.4
Zaccai, G.5
Borst, P.6
Perrakis, A.7
-
41
-
-
80052229798
-
The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1
-
1:CAS:528:DC%2BC3MXptlyjsL4%3D
-
Heidebrecht, T., Christodoulou, E., Chalmers, M.J., Jan, S., Ter Riet, B., Grover, R.K., Joosten, R.P., Littler, D., van Luenen, H., Griffin, P.R., Wentworth Jr., P., Borst, P., Perrakis, A.: The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1. Nucleic Acids Res. 39, 5715-5728 (2011)
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 5715-5728
-
-
Heidebrecht, T.1
Christodoulou, E.2
Chalmers, M.J.3
Jan, S.4
Ter Riet, B.5
Grover, R.K.6
Joosten, R.P.7
Littler, D.8
Van Luenen, H.9
Griffin, P.R.10
Wentworth, Jr.P.11
Borst, P.12
Perrakis, A.13
-
42
-
-
59649125285
-
Evidence that J-binding protein 2 is a thymidine hydroxylase catalyzing the first step in the biosynthesis of DNA base J
-
1:CAS:528:DC%2BD1MXitVGitb8%3D
-
Vainio, S., Genest, P.A., ter Riet, B., van Luenen, H., Borst, P.: Evidence that J-binding protein 2 is a thymidine hydroxylase catalyzing the first step in the biosynthesis of DNA base J. Mol. Biochem. Parasitol. 164, 157-161 (2009)
-
(2009)
Mol. Biochem. Parasitol.
, vol.164
, pp. 157-161
-
-
Vainio, S.1
Genest, P.A.2
Ter Riet, B.3
Van Luenen, H.4
Borst, P.5
-
43
-
-
84862001094
-
JBP1 and JBP2 proteins are Fe2+/2-oxoglutarate-dependent dioxygenases regulating hydroxylation of thymidine residues in trypanosome DNA
-
1:CAS:528:DC%2BC38Xot1KjsLs%3D
-
Cliffe, L.J., Hirsch, G., Wang, J., Ekanayake, D., Bullard, W., Hu, M., Wang, Y., Sabatini, R.: JBP1 and JBP2 proteins are Fe2+/2-oxoglutarate-dependent dioxygenases regulating hydroxylation of thymidine residues in trypanosome DNA. J. Biol. Chem. 287, 19886-19895 (2012)
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 19886-19895
-
-
Cliffe, L.J.1
Hirsch, G.2
Wang, J.3
Ekanayake, D.4
Bullard, W.5
Hu, M.6
Wang, Y.7
Sabatini, R.8
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