-
1
-
-
0000775877
-
The measurement of gene mutation rate in Drosophila, its high variability, and its dependence upon temperature
-
Muller H.J. The measurement of gene mutation rate in Drosophila, its high variability, and its dependence upon temperature. Genetics 1928, 13:279-357.
-
(1928)
Genetics
, vol.13
, pp. 279-357
-
-
Muller, H.J.1
-
2
-
-
84856220271
-
Mutation rate inferred from synonymous substitutions in a long-term evolution experiment with Escherichia coli
-
Wielgoss S., Barrick J.E., Tenaillon O., Cruveiller S., Chane-Woon-Ming B., Médigue C., et al. Mutation rate inferred from synonymous substitutions in a long-term evolution experiment with Escherichia coli. G3 (Bethesda) 2011, 1:183-186. 10.1534/g3.111.000406.
-
(2011)
G3 (Bethesda)
, vol.1
, pp. 183-186
-
-
Wielgoss, S.1
Barrick, J.E.2
Tenaillon, O.3
Cruveiller, S.4
Chane-Woon-Ming, B.5
Médigue, C.6
-
3
-
-
84867339877
-
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
-
Lee H., Popodi E., Tang H., Foster P.L. Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:E2774-E2783. 10.1073/pnas.1210309109.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. E2774-E2783
-
-
Lee, H.1
Popodi, E.2
Tang, H.3
Foster, P.L.4
-
4
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
Drake J.W. A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl. Acad. Sci. U. S. A. 1991, 88:7160-7164.
-
(1991)
Proc. Natl. Acad. Sci. U. S. A.
, vol.88
, pp. 7160-7164
-
-
Drake, J.W.1
-
5
-
-
0031916242
-
Rates of spontaneous mutation
-
Drake J.W., Charlesworth B., Charlesworth D., Crow J.F. Rates of spontaneous mutation. Genetics 1998, 148:1667-1686.
-
(1998)
Genetics
, vol.148
, pp. 1667-1686
-
-
Drake, J.W.1
Charlesworth, B.2
Charlesworth, D.3
Crow, J.F.4
-
6
-
-
84864585639
-
Contrasting mutation rates from specific-locus and long-term mutation-accumulation procedures
-
Drake J.W. Contrasting mutation rates from specific-locus and long-term mutation-accumulation procedures. G3 (Bethesda) 2012, 2:483-485. 10.1534/g3.111.001842.
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 483-485
-
-
Drake, J.W.1
-
7
-
-
0001641514
-
Mutations of bacteria from virus sensitivity to virus resistance
-
Luria S.E., Delbrück M. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 1943, 28:491-511.
-
(1943)
Genetics
, vol.28
, pp. 491-511
-
-
Luria, S.E.1
Delbrück, M.2
-
8
-
-
0001313535
-
The distribution of the numbers of mutants in bacterial populations
-
Lea D.E., Coulson C.A. The distribution of the numbers of mutants in bacterial populations. J. Genet. 1949, 49:264-285.
-
(1949)
J. Genet.
, vol.49
, pp. 264-285
-
-
Lea, D.E.1
Coulson, C.A.2
-
9
-
-
33745211644
-
Methods for determining spontaneous mutation rates
-
Foster P.L. Methods for determining spontaneous mutation rates. Methods Enzymol. 2006, 409:195-213. 10.1016/S0076-6879(05)09012-9.
-
(2006)
Methods Enzymol.
, vol.409
, pp. 195-213
-
-
Foster, P.L.1
-
10
-
-
0023847825
-
Pitfalls and practice of Luria-Delbrück fluctuation analysis: a review
-
Kendal W.S., Frost P. Pitfalls and practice of Luria-Delbrück fluctuation analysis: a review. Cancer Res. 1988, 48:1060-1065.
-
(1988)
Cancer Res.
, vol.48
, pp. 1060-1065
-
-
Kendal, W.S.1
Frost, P.2
-
11
-
-
0028182772
-
Luria-Delbrück fluctuation experiments: design and analysis
-
Jones M.E., Thomas S.M., Rogers A. Luria-Delbrück fluctuation experiments: design and analysis. Genetics 1994, 136:1209-1216.
-
(1994)
Genetics
, vol.136
, pp. 1209-1216
-
-
Jones, M.E.1
Thomas, S.M.2
Rogers, A.3
-
12
-
-
84959133761
-
Stress-induced mutagenesis
-
Williams A.B., Foster P.L. Stress-induced mutagenesis. EcoSal 2012, 10.1128/ecosalplus.7.2.3.
-
(2012)
EcoSal
-
-
Williams, A.B.1
Foster, P.L.2
-
13
-
-
0026470403
-
On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants
-
Sarkar S., Ma W.T., Sandri G.H. On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica 1992, 85:173-179.
-
(1992)
Genetica
, vol.85
, pp. 173-179
-
-
Sarkar, S.1
Ma, W.T.2
Sandri, G.H.3
-
14
-
-
0033828761
-
Estimate of the mutation rate per nucleotide in humans
-
Nachman M.W., Crowell S.L. Estimate of the mutation rate per nucleotide in humans. Genetics 2000, 156:297-304.
-
(2000)
Genetics
, vol.156
, pp. 297-304
-
-
Nachman, M.W.1
Crowell, S.L.2
-
15
-
-
80054760378
-
Variation in the mutation rate across mammalian genomes
-
Hodgkinson A., Eyre-Walker A. Variation in the mutation rate across mammalian genomes. Nat. Rev. Genet. 2011, 12:756-766. 10.1038/nrg3098.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 756-766
-
-
Hodgkinson, A.1
Eyre-Walker, A.2
-
16
-
-
84884419292
-
Emerging patterns of somatic mutations in cancer
-
Watson I.R., Takahashi K., Futreal P.A., Chin L. Emerging patterns of somatic mutations in cancer. Nat. Rev. Genet. 2013, 14:703-718. 10.1038/nrg3539.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 703-718
-
-
Watson, I.R.1
Takahashi, K.2
Futreal, P.A.3
Chin, L.4
-
18
-
-
0346726023
-
Neutral mutations and neutral substitutions in bacterial genomes
-
Ochman H. Neutral mutations and neutral substitutions in bacterial genomes. Mol. Biol. Evol. 2003, 20:2091-2096. 10.1093/molbev/msg229.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 2091-2096
-
-
Ochman, H.1
-
19
-
-
0026002819
-
Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution
-
Sharp P.M. Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution. J. Mol. Evol. 1991, 33:23-33.
-
(1991)
J. Mol. Evol.
, vol.33
, pp. 23-33
-
-
Sharp, P.M.1
-
20
-
-
0030994798
-
Amelioration of bacterial genomes: rates of change and exchange
-
Lawrence J.G., Ochman H. Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 1997, 44:383-397.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 383-397
-
-
Lawrence, J.G.1
Ochman, H.2
-
21
-
-
84899819618
-
Mutation rate plasticity in rifampicin resistance depends on Escherichia coli cell-cell interactions
-
Krašovec R., Belavkin R.V., Aston J.A.D., Channon A., Aston E., Rash B.M., et al. Mutation rate plasticity in rifampicin resistance depends on Escherichia coli cell-cell interactions. Nat. Commun. 2014, 5:3742. 10.1038/ncomms4742.
-
(2014)
Nat. Commun.
, vol.5
, pp. 3742
-
-
Krašovec, R.1
Belavkin, R.V.2
Aston, J.A.D.3
Channon, A.4
Aston, E.5
Rash, B.M.6
-
22
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
Lynch M., Sung W., Morris K., Coffey N., Landry C.R., Dopman E.B., et al. A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:9272-9277. 10.1073/pnas.0803466105.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 9272-9277
-
-
Lynch, M.1
Sung, W.2
Morris, K.3
Coffey, N.4
Landry, C.R.5
Dopman, E.B.6
-
23
-
-
77951697965
-
Spontaneous mutation accumulation studies in evolutionary genetics
-
Halligan D.L., Keightley P.D. Spontaneous mutation accumulation studies in evolutionary genetics. Annu. Rev. Ecol. Evol. Syst. 2009, 40:151-172. 10.1146/annurev.ecolsys.39.110707.173437.
-
(2009)
Annu. Rev. Ecol. Evol. Syst.
, vol.40
, pp. 151-172
-
-
Halligan, D.L.1
Keightley, P.D.2
-
24
-
-
0030855150
-
Analysis of the mechanism of quinolone resistance in nalidixic acid-resistant clinical isolates of Salmonella serotype Typhimurium
-
Ruiz J., Castro D., Goñi P., Santamaria J.A., Borrego J.J., Vila J. Analysis of the mechanism of quinolone resistance in nalidixic acid-resistant clinical isolates of Salmonella serotype Typhimurium. J. Med. Microbiol. 1997, 46:623-628.
-
(1997)
J. Med. Microbiol.
, vol.46
, pp. 623-628
-
-
Ruiz, J.1
Castro, D.2
Goñi, P.3
Santamaria, J.A.4
Borrego, J.J.5
Vila, J.6
-
25
-
-
0036720293
-
GyrA Mutations associated with nalidixic acid-resistant salmonellae from wild birds
-
Reche M.P., García de los Ríos J.E., Jiménez P.A., Rojas A.M., Rotger R. gyrA Mutations associated with nalidixic acid-resistant salmonellae from wild birds. Antimicrob. Agents Chemother. 2002, 46:3108-3109.
-
(2002)
Antimicrob. Agents Chemother.
, vol.46
, pp. 3108-3109
-
-
Reche, M.P.1
García de los Ríos, J.E.2
Jiménez, P.A.3
Rojas, A.M.4
Rotger, R.5
-
26
-
-
0037395918
-
Mutations in gyrA and parC genes in nalidixic acid-resistant Escherichia coli strains from food products, humans and animals
-
Sáenz Y., Zarazaga M., Briñas L., Ruiz-Larrea F., Torres C. Mutations in gyrA and parC genes in nalidixic acid-resistant Escherichia coli strains from food products, humans and animals. J. Antimicrob. Chemother. 2003, 51:1001-1005. 10.1093/jac/dkg168.
-
(2003)
J. Antimicrob. Chemother.
, vol.51
, pp. 1001-1005
-
-
Sáenz, Y.1
Zarazaga, M.2
Briñas, L.3
Ruiz-Larrea, F.4
Torres, C.5
-
27
-
-
84867363653
-
Polynucleotide phosphorylase plays an important role in the generation of spontaneous mutations in Escherichia coli
-
Becket E., Tse L., Yung M., Cosico A., Miller J.H. Polynucleotide phosphorylase plays an important role in the generation of spontaneous mutations in Escherichia coli. J. Bacteriol. 2012, 194:5613-5620. 10.1128/JB. 00962-12.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 5613-5620
-
-
Becket, E.1
Tse, L.2
Yung, M.3
Cosico, A.4
Miller, J.H.5
-
28
-
-
0023749808
-
Mapping and sequencing of mutations in the Escherichia coli rpoB gene that lead to rifampicin resistance
-
Jin D.J., Gross C.A. Mapping and sequencing of mutations in the Escherichia coli rpoB gene that lead to rifampicin resistance. J. Mol. Biol. 1988, 202:45-58.
-
(1988)
J. Mol. Biol.
, vol.202
, pp. 45-58
-
-
Jin, D.J.1
Gross, C.A.2
-
29
-
-
0037435421
-
Use of the rpoB gene to determine the specificity of base substitution mutations on the Escherichia coli chromosome
-
Garibyan L., Huang T., Kim M., Wolff E., Nguyen A., Nguyen T., et al. Use of the rpoB gene to determine the specificity of base substitution mutations on the Escherichia coli chromosome. DNA Repair. 2003, 2:593-608.
-
(2003)
DNA Repair.
, vol.2
, pp. 593-608
-
-
Garibyan, L.1
Huang, T.2
Kim, M.3
Wolff, E.4
Nguyen, A.5
Nguyen, T.6
-
30
-
-
0024966756
-
Chromosomal location and evolutionary rate variation in enterobacterial genes
-
Sharp P.M., Shields D.C., Wolfe K.H., Li W.H. Chromosomal location and evolutionary rate variation in enterobacterial genes. Science 1989, 246:808-810.
-
(1989)
Science
, vol.246
, pp. 808-810
-
-
Sharp, P.M.1
Shields, D.C.2
Wolfe, K.H.3
Li, W.H.4
-
31
-
-
0002520050
-
The statistical theory of bacterial populations subject to mutation
-
Armitage P. The statistical theory of bacterial populations subject to mutation. J. R. Stat. Soc. 1952, 14:1-40.
-
(1952)
J. R. Stat. Soc.
, vol.14
, pp. 1-40
-
-
Armitage, P.1
-
32
-
-
84865287298
-
Multiple long-term, experimentally-evolved populations of Escherichia coli acquire dependence upon citrate as an iron chelator for optimal growth on glucose
-
Leiby N., Harcombe W.R., Marx C.J. Multiple long-term, experimentally-evolved populations of Escherichia coli acquire dependence upon citrate as an iron chelator for optimal growth on glucose. BMC Evol. Biol. 2012, 12:151. 10.1186/1471-2148-12-151.
-
(2012)
BMC Evol. Biol.
, vol.12
, pp. 151
-
-
Leiby, N.1
Harcombe, W.R.2
Marx, C.J.3
-
33
-
-
74349119217
-
Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli
-
Stanek M.T., Cooper T.F., Lenski R.E. Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli. BMC Evol. Biol. 2009, 9:302. 10.1186/1471-2148-9-302.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 302
-
-
Stanek, M.T.1
Cooper, T.F.2
Lenski, R.E.3
-
34
-
-
84895441609
-
The origins of specialization: insights from bacteria held 25 years in captivity
-
Cooper V.S. The origins of specialization: insights from bacteria held 25 years in captivity. PLoS Biol. 2014, 12:e1001790. 10.1371/journal.pbio.1001790.
-
(2014)
PLoS Biol.
, vol.12
, pp. e1001790
-
-
Cooper, V.S.1
-
35
-
-
0034730598
-
High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans
-
Denver D.R., Morris K., Lynch M., Vassilieva L.L., Thomas W.K. High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans. Science 2000, 289:2342-2344.
-
(2000)
Science
, vol.289
, pp. 2342-2344
-
-
Denver, D.R.1
Morris, K.2
Lynch, M.3
Vassilieva, L.L.4
Thomas, W.K.5
-
36
-
-
3943059570
-
High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome
-
Denver D.R., Morris K., Lynch M., Thomas W.K. High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature 2004, 430:679-682. 10.1038/nature02697.
-
(2004)
Nature
, vol.430
, pp. 679-682
-
-
Denver, D.R.1
Morris, K.2
Lynch, M.3
Thomas, W.K.4
-
37
-
-
1942499339
-
Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans
-
Denver D.R., Morris K., Kewalramani A., Harris K.E., Chow A., Estes S., et al. Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans. J. Mol. Evol. 2004, 58:584-595. 10.1007/s00239-004-2580-4.
-
(2004)
J. Mol. Evol.
, vol.58
, pp. 584-595
-
-
Denver, D.R.1
Morris, K.2
Kewalramani, A.3
Harris, K.E.4
Chow, A.5
Estes, S.6
-
38
-
-
33846047594
-
Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
-
Haag-Liautard C., Dorris M., Maside X., Macaskill S., Halligan D.L., Houle D., et al. Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature 2007, 445:82-85. 10.1038/nature05388.
-
(2007)
Nature
, vol.445
, pp. 82-85
-
-
Haag-Liautard, C.1
Dorris, M.2
Maside, X.3
Macaskill, S.4
Halligan, D.L.5
Houle, D.6
-
39
-
-
77956190600
-
DNA methylation and mutator genes in Escherichia coli K-12
-
Marinus M.G. DNA methylation and mutator genes in Escherichia coli K-12. Mutat. Res. 2010, 705:71-76. 10.1016/j.mrrev.2010.05.001.
-
(2010)
Mutat. Res.
, vol.705
, pp. 71-76
-
-
Marinus, M.G.1
-
40
-
-
84883214477
-
On the mutational topology of the bacterial genome
-
Foster P.L., Hanson A.J., Lee H., Popodi E.M., Tang H. On the mutational topology of the bacterial genome. G3 (Bethesda) 2013, 3:399-407. 10.1534/g3.112.005355.
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 399-407
-
-
Foster, P.L.1
Hanson, A.J.2
Lee, H.3
Popodi, E.M.4
Tang, H.5
-
41
-
-
84857191660
-
Transcription as a source of genome instability
-
Kim N., Jinks-Robertson S. Transcription as a source of genome instability. Nat. Rev. Genet. 2012, 13:204-214. 10.1038/nrg3152.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 204-214
-
-
Kim, N.1
Jinks-Robertson, S.2
-
42
-
-
0036469913
-
The connection between transcription and genomic instability
-
Aguilera A. The connection between transcription and genomic instability. EMBO J. 2002, 21:195-201. 10.1093/emboj/21.3.195.
-
(2002)
EMBO J.
, vol.21
, pp. 195-201
-
-
Aguilera, A.1
-
43
-
-
0036363646
-
Mechanisms of transcription-coupled DNA repair
-
Svejstrup J.Q. Mechanisms of transcription-coupled DNA repair. Nat. Rev. Mol. Cell Biol. 2002, 3:21-29. 10.1038/nrm703.
-
(2002)
Nat. Rev. Mol. Cell Biol.
, vol.3
, pp. 21-29
-
-
Svejstrup, J.Q.1
-
44
-
-
56749157389
-
Transcription-coupled DNA repair: two decades of progress and surprises
-
Hanawalt P.C., Spivak G. Transcription-coupled DNA repair: two decades of progress and surprises. Nat. Rev. Mol. Cell Biol. 2008, 9:958-970. 10.1038/nrm2549.
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 958-970
-
-
Hanawalt, P.C.1
Spivak, G.2
-
45
-
-
84870627323
-
Genomic evidence for elevated mutation rates in highly expressed genes
-
Park C., Qian W., Zhang J. Genomic evidence for elevated mutation rates in highly expressed genes. EMBO Rep. 2012, 13:1123-1129. 10.1038/embor.2012.165.
-
(2012)
EMBO Rep.
, vol.13
, pp. 1123-1129
-
-
Park, C.1
Qian, W.2
Zhang, J.3
-
46
-
-
84860512528
-
Evidence of non-random mutation rates suggests an evolutionary risk management strategy
-
Martincorena I., Seshasayee A.S.N., Luscombe N.M. Evidence of non-random mutation rates suggests an evolutionary risk management strategy. Nature 2012, 485:95-98. 10.1038/nature10995.
-
(2012)
Nature
, vol.485
, pp. 95-98
-
-
Martincorena, I.1
Seshasayee, A.S.N.2
Luscombe, N.M.3
-
47
-
-
84879365232
-
No gene-specific optimization of mutation rate in Escherichia coli
-
Chen X., Zhang J. No gene-specific optimization of mutation rate in Escherichia coli. Mol. Biol. Evol. 2013, 30:1559-1562. 10.1093/molbev/mst060.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1559-1562
-
-
Chen, X.1
Zhang, J.2
-
48
-
-
0000168740
-
On the topology of the genetic fine structure
-
Benzer S. On the topology of the genetic fine structure. Proc. Natl. Acad. Sci. U. S. A. 1959, 45:1607-1620.
-
(1959)
Proc. Natl. Acad. Sci. U. S. A.
, vol.45
, pp. 1607-1620
-
-
Benzer, S.1
-
49
-
-
67651208839
-
Avoiding dangerous missense: thermophiles display especially low mutation rates
-
Drake J.W. Avoiding dangerous missense: thermophiles display especially low mutation rates. PLoS Genet. 2009, 5:e1000520. 10.1371/journal.pgen.1000520.
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000520
-
-
Drake, J.W.1
|